RNA–Protein interactions for RNA: ENST00000622456.4

KLHDC4-227, Transcript of kelch domain containing 4, humanhuman

TSL 5 BASIC

Gene KLHDC4, Length 1,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC4-227ENST00000622456 PTBP1P26599 531 aaKnown RBP eCLIP14.58□□□□□ -0.086e-21■■■■■ 66.9
KLHDC4-227ENST00000622456 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.49■■□□□ 1.036e-15■■■■■ 44.9
KLHDC4-227ENST00000622456 MATR3P43243 847 aaKnown RBP eCLIP20.31■□□□□ 0.846e-13■■■□□ 16.9
KLHDC4-227ENST00000622456 NKRFO15226 690 aaKnown RBP eCLIP21.25■□□□□ 0.991e-11■■■■■ 43.4
KLHDC4-227ENST00000622456 ZNF622Q969S3 477 aaKnown RBP eCLIP23.68■■□□□ 1.381e-9■□□□□ 10.1
KLHDC4-227ENST00000622456 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.79■□□□□ 0.924e-9■■■□□ 16.6
KLHDC4-227ENST00000622456 AQRO60306 1485 aaKnown RBP eCLIP31.99■■■□□ 2.711e-8■■■□□ 16.7
KLHDC4-227ENST00000622456 EIF4G2P78344 907 aaKnown RBP eCLIP26.05■■□□□ 1.763e-8■■■■■ 56.5
KLHDC4-227ENST00000622456 AATFQ9NY61 560 aaKnown RBP eCLIP22.52■■□□□ 1.22e-7■■■■■ 44.2
KLHDC4-227ENST00000622456 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.88■□□□□ 0.452e-7■■■■■ 64.2
KLHDC4-227ENST00000622456 TARDBPQ13148 414 aaKnown RBP eCLIP18.18■□□□□ 0.52e-7■■■■■ 51
KLHDC4-227ENST00000622456 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.92■□□□□ 0.32e-7■■□□□ 12.8
KLHDC4-227ENST00000622456 ZRANB2O95218 330 aaKnown RBP eCLIP18.86■□□□□ 0.612e-7■■■■■ 37.1
KLHDC4-227ENST00000622456 EWSR1Q01844 656 aaKnown RBP eCLIP13.82□□□□□ -0.22e-7■■■■□ 20.1
KLHDC4-227ENST00000622456 TAF15Q92804 592 aaKnown RBP eCLIP14.98□□□□□ -0.012e-7■■■□□ 15
KLHDC4-227ENST00000622456 PPIGQ13427 754 aaKnown RBP eCLIP20.85■□□□□ 0.933e-7■■■□□ 16.5
KLHDC4-227ENST00000622456 SF3A3Q12874 501 aaKnown RBP eCLIP16.99■□□□□ 0.313e-7■■■■■ 27.5
KLHDC4-227ENST00000622456 DDX6P26196 483 aaKnown RBP eCLIP19.61■□□□□ 0.734e-7■■■■■ 56.6
KLHDC4-227ENST00000622456 U2AF2P26368 475 aaKnown RBP eCLIP21.01■□□□□ 0.956e-7■■■■□ 22.4
KLHDC4-227ENST00000622456 NONOQ15233 471 aaKnown RBP eCLIP21.12■□□□□ 0.976e-7■■■□□ 16.4
KLHDC4-227ENST00000622456 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.76■□□□□ 0.756e-7■■■■□ 24.7
KLHDC4-227ENST00000622456 EFTUD2Q15029 972 aaKnown RBP eCLIP17.96■□□□□ 0.476e-7■■■■■ 30.5
KLHDC4-227ENST00000622456 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.44■□□□□ 0.547e-7■■■■□ 22.8
KLHDC4-227ENST00000622456 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.89■□□□□ 0.777e-7■■■■■ 283.1
KLHDC4-227ENST00000622456 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.5■□□□□ 0.078e-7■■■□□ 16.8
KLHDC4-227ENST00000622456 HNRNPMP52272 730 aaKnown RBP eCLIP28.92■■■□□ 2.228e-7■■■■□ 20.9
KLHDC4-227ENST00000622456 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.02■□□□□ 0.89e-7■■■■■ 55
KLHDC4-227ENST00000622456 ILF3Q12906 894 aaKnown RBP eCLIP18.35■□□□□ 0.531e-6■□□□□ 9.5
KLHDC4-227ENST00000622456 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.24■□□□□ 0.351e-6■■■□□ 18.7
KLHDC4-227ENST00000622456 AARSP49588 968 aaKnown RBP eCLIP20.05■□□□□ 0.81e-6■■■□□ 15.5
KLHDC4-227ENST00000622456 HNRNPCP07910 306 aaKnown RBP eCLIP13.9□□□□□ -0.181e-6■■■■□ 21
KLHDC4-227ENST00000622456 RBM15Q96T37 977 aaKnown RBP eCLIP18.67■□□□□ 0.581e-6■■■■□ 24.7
KLHDC4-227ENST00000622456 FUSP35637 526 aaKnown RBP eCLIP12.28□□□□□ -0.441e-6■■■□□ 15.2
KLHDC4-227ENST00000622456 RBFOX2O43251 390 aaKnown RBP eCLIP14.57□□□□□ -0.081e-6■■■■□ 22.7
KLHDC4-227ENST00000622456 GTF2F1P35269 517 aaKnown RBP eCLIP20.13■□□□□ 0.812e-6■■■■□ 23.7
KLHDC4-227ENST00000622456 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.34■■□□□ 1.172e-6■■■□□ 15.7
KLHDC4-227ENST00000622456 SF3B1O75533 1304 aaKnown RBP eCLIP20.13■□□□□ 0.812e-6■■■■■ 85.8
KLHDC4-227ENST00000622456 PCBP2Q15366 365 aaKnown RBP eCLIP17.68■□□□□ 0.422e-6■■■■■ 31.7
KLHDC4-227ENST00000622456 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.39■□□□□ 0.692e-6■■□□□ 12
KLHDC4-227ENST00000622456 TRA2AQ13595 282 aaKnown RBP eCLIP18.06■□□□□ 0.482e-6■■■□□ 15.9
KLHDC4-227ENST00000622456 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.06■■□□□ 1.122e-6■■■□□ 16.2
KLHDC4-227ENST00000622456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.11■■■□□ 2.092e-6■■■□□ 15.3
KLHDC4-227ENST00000622456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.95■■□□□ 1.582e-6■□□□□ 9.5
KLHDC4-227ENST00000622456 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.29■□□□□ 0.683e-6■■■□□ 17.1
KLHDC4-227ENST00000622456 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.61■■□□□ 1.053e-6■■■■■ 30.5
KLHDC4-227ENST00000622456 SRSF1Q07955 248 aaKnown RBP eCLIP16.91■□□□□ 0.33e-6■□□□□ 11.2
KLHDC4-227ENST00000622456 KHSRPQ92945 711 aaKnown RBP eCLIP19.68■□□□□ 0.743e-6■■□□□ 14.2
KLHDC4-227ENST00000622456 SF3B4Q15427 424 aaKnown RBP eCLIP16.76■□□□□ 0.273e-6■■■■□ 23.2
KLHDC4-227ENST00000622456 DKC1O60832 514 aaKnown RBP eCLIP20.82■□□□□ 0.923e-6■■■■□ 24.5
KLHDC4-227ENST00000622456 DDX3XO00571 662 aaKnown RBP eCLIP19.32■□□□□ 0.683e-6■■■■□ 19.9
KLHDC4-227ENST00000622456 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.4■■■□□ 2.34e-6■■■■□ 21.7
KLHDC4-227ENST00000622456 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.48■■□□□ 1.194e-6■■■■■ 34.4
KLHDC4-227ENST00000622456 U2AF1Q01081 240 aaKnown RBP eCLIP24.85■■□□□ 1.576e-6■□□□□ 8.6
KLHDC4-227ENST00000622456 SRSF9Q13242 221 aaKnown RBP eCLIP11.42□□□□□ -0.587e-6■■■■□ 20
KLHDC4-227ENST00000622456 LSM11P83369 360 aaKnown RBP eCLIP16.42■□□□□ 0.227e-6■■■■□ 21.1
KLHDC4-227ENST00000622456 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.95□□□□□ -0.029e-6■□□□□ 9.4
KLHDC4-227ENST00000622456 SMNDC1O75940 238 aaKnown RBP eCLIP16.54■□□□□ 0.249e-6■■■■□ 24.8
KLHDC4-227ENST00000622456 LARP4Q71RC2 724 aaKnown RBP eCLIP17.2■□□□□ 0.349e-6■■■■■ 29.6
Retrieved 58 of 58 RNA–protein pairs in 1168 ms