RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PHF23Q9BUL5 403 aaPredicted RBP15.68■□□□□ 0.1
VPS35-206ENST00000565228 ARAP1Q96P48 1450 aa15.65■□□□□ 0.1
VPS35-206ENST00000565228 SHROOM2Q13796 1616 aa15.65■□□□□ 0.1
VPS35-206ENST00000565228 PRXQ9BXM0 1461 aa15.63■□□□□ 0.09
VPS35-206ENST00000565228 RAPGEF2Q9Y4G8 1499 aa15.59■□□□□ 0.09
VPS35-206ENST00000565228 FAM9AQ8IZU1 332 aaPredicted RBP15.58■□□□□ 0.08
VPS35-206ENST00000565228 KIAA0586Q9BVV6 1533 aa15.57■□□□□ 0.08
VPS35-206ENST00000565228 CSRNP3Q8WYN3 585 aa15.56■□□□□ 0.08
VPS35-206ENST00000565228 JPH4Q96JJ6 628 aa15.55■□□□□ 0.08
VPS35-206ENST00000565228 CYB5RLQ6IPT4 315 aa15.54■□□□□ 0.08
VPS35-206ENST00000565228 PRG4Q92954 1404 aaPredicted RBP15.53■□□□□ 0.08
VPS35-206ENST00000565228 EEA1Q15075 1411 aa15.5■□□□□ 0.07
VPS35-206ENST00000565228 IQGAP2Q13576 1575 aa15.49■□□□□ 0.07
VPS35-206ENST00000565228 CTTNBP2Q8WZ74 1663 aa15.47■□□□□ 0.07
VPS35-206ENST00000565228 DISP1Q96F81 1524 aa15.46■□□□□ 0.07
VPS35-206ENST00000565228 KIF21BO75037 1637 aa15.44■□□□□ 0.06
VPS35-206ENST00000565228 UGGT2Q9NYU1 1516 aa15.43■□□□□ 0.06
VPS35-206ENST00000565228 EHMT2Q96KQ7 1210 aa15.41■□□□□ 0.06
VPS35-206ENST00000565228 KIAA0556O60303 1618 aa15.39■□□□□ 0.05
VPS35-206ENST00000565228 TRHP20396 242 aaPredicted RBP15.35■□□□□ 0.05
VPS35-206ENST00000565228 ADCY10Q96PN6 1610 aa15.35■□□□□ 0.05
VPS35-206ENST00000565228 TNIKQ9UKE5 1360 aa15.33■□□□□ 0.04
VPS35-206ENST00000565228 TTBK1Q5TCY1 1321 aaPredicted RBP15.32■□□□□ 0.04
VPS35-206ENST00000565228 SAMD9Q5K651 1589 aa15.32■□□□□ 0.04
VPS35-206ENST00000565228 PTPRGP23470 1445 aa15.31■□□□□ 0.04
VPS35-206ENST00000565228 GOLGA3Q08378 1498 aa15.31■□□□□ 0.04
VPS35-206ENST00000565228 CARMIL2Q6F5E8 1435 aa15.3■□□□□ 0.04
VPS35-206ENST00000565228 P3H3Q8IVL6 736 aa15.29■□□□□ 0.04
VPS35-206ENST00000565228 RANGAP1P46060 587 aaPredicted RBP15.27■□□□□ 0.04
VPS35-206ENST00000565228 PLB1Q6P1J6 1458 aa15.26■□□□□ 0.03
VPS35-206ENST00000565228 ABCA8O94911 1581 aa15.24■□□□□ 0.03
VPS35-206ENST00000565228 UBTFP17480 764 aaKnown RBP15.23■□□□□ 0.03
VPS35-206ENST00000565228 FHOD3Q2V2M9 1422 aa15.23■□□□□ 0.03
VPS35-206ENST00000565228 UACAQ9BZF9 1416 aa15.23■□□□□ 0.03
VPS35-206ENST00000565228 UHRF1BP1LA0JNW5 1464 aa15.22■□□□□ 0.03
VPS35-206ENST00000565228 ABCC2Q92887 1545 aa15.22■□□□□ 0.03
VPS35-206ENST00000565228 ARHGAP35Q9NRY4 1499 aa15.21■□□□□ 0.03
VPS35-206ENST00000565228 LOC105371045A0A1W2PR82 267 aa15.19■□□□□ 0.02
VPS35-206ENST00000565228 KIF13AQ9H1H9 1805 aa15.17■□□□□ 0.02
VPS35-206ENST00000565228 KDM5BQ9UGL1 1544 aa15.17■□□□□ 0.02
VPS35-206ENST00000565228 ZCCHC11Q5TAX3 1644 aaKnown RBP15.16■□□□□ 0.02
VPS35-206ENST00000565228 MAPKBP1O60336 1514 aa15.16■□□□□ 0.02
VPS35-206ENST00000565228 EFCAB5A4FU69 1503 aa15.15■□□□□ 0.02
VPS35-206ENST00000565228 RAPGEF6Q8TEU7 1601 aa15.12■□□□□ 0.01
VPS35-206ENST00000565228 DIP2BQ9P265 1576 aa15.11■□□□□ 0.01
VPS35-206ENST00000565228 ASXL2Q76L83 1435 aa15.11■□□□□ 0.01
VPS35-206ENST00000565228 ARID3CA6NKF2 412 aa15.11■□□□□ 0.01
VPS35-206ENST00000565228 ATP10BO94823 1461 aa15.11■□□□□ 0.01
VPS35-206ENST00000565228 NUP153P49790 1475 aaKnown RBP15.11■□□□□ 0.01
VPS35-206ENST00000565228 ABCC10Q5T3U5 1492 aa15.1■□□□□ 0.01
VPS35-206ENST00000565228 LRRIQ1Q96JM4 1722 aa15.08■□□□□ 0
VPS35-206ENST00000565228 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
VPS35-206ENST00000565228 CLIP1P30622 1438 aa15.06■□□□□ 0
VPS35-206ENST00000565228 EPRSP07814 1512 aaKnown RBP15.04■□□□□ -0
VPS35-206ENST00000565228 FAM69CQ0P6D2 419 aa15.04■□□□□ -0
VPS35-206ENST00000565228 PPRC1Q5VV67 1664 aaKnown RBP15.03■□□□□ -0
VPS35-206ENST00000565228 CDK13Q14004 1512 aaKnown RBP15.02■□□□□ -0
VPS35-206ENST00000565228 CEP162Q5TB80 1403 aa15.02■□□□□ -0
VPS35-206ENST00000565228 PCF11O94913 1555 aaKnown RBP15.02□□□□□ -0.01
VPS35-206ENST00000565228 WDR7Q9Y4E6 1490 aa15.01□□□□□ -0.01
VPS35-206ENST00000565228 TSPOAP1O95153 1857 aa15□□□□□ -0.01
VPS35-206ENST00000565228 GLI2P10070 1586 aa15□□□□□ -0.01
VPS35-206ENST00000565228 FMN1Q68DA7 1419 aa14.99□□□□□ -0.01
VPS35-206ENST00000565228 MAP3K4Q9Y6R4 1608 aa14.97□□□□□ -0.01
VPS35-206ENST00000565228 HECW1Q76N89 1606 aa14.95□□□□□ -0.02
VPS35-206ENST00000565228 CASKIN1Q8WXD9 1431 aa14.95□□□□□ -0.02
VPS35-206ENST00000565228 ILDR1Q86SU0 546 aaPredicted RBP14.95□□□□□ -0.02
VPS35-206ENST00000565228 KCNH8Q96L42 1107 aa14.95□□□□□ -0.02
VPS35-206ENST00000565228 MAGI3Q5TCQ9 1506 aa14.94□□□□□ -0.02
VPS35-206ENST00000565228 ATP1B4Q9UN42 357 aaPredicted RBP14.91□□□□□ -0.02
VPS35-206ENST00000565228 COL17A1Q9UMD9 1497 aaPredicted RBP14.9□□□□□ -0.02
VPS35-206ENST00000565228 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.9□□□□□ -0.02
VPS35-206ENST00000565228 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
VPS35-206ENST00000565228 ABCA9Q8IUA7 1624 aa14.9□□□□□ -0.02
VPS35-206ENST00000565228 FYCO1Q9BQS8 1478 aa14.89□□□□□ -0.03
VPS35-206ENST00000565228 KIF14Q15058 1648 aa14.88□□□□□ -0.03
VPS35-206ENST00000565228 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.88□□□□□ -0.03
VPS35-206ENST00000565228 CFAP43Q8NDM7 1665 aa14.88□□□□□ -0.03
VPS35-206ENST00000565228 TTC37Q6PGP7 1564 aa14.88□□□□□ -0.03
VPS35-206ENST00000565228 CD109Q6YHK3 1445 aa14.86□□□□□ -0.03
VPS35-206ENST00000565228 PLEKHD1A6NEE1 506 aa14.85□□□□□ -0.03
VPS35-206ENST00000565228 TROQ12816 1431 aaPredicted RBP14.83□□□□□ -0.04
VPS35-206ENST00000565228 VPS8Q8N3P4 1428 aa14.83□□□□□ -0.04
VPS35-206ENST00000565228 CCDC18Q5T9S5 1454 aa14.81□□□□□ -0.04
VPS35-206ENST00000565228 KDM6BO15054 1643 aa14.79□□□□□ -0.04
VPS35-206ENST00000565228 FOXD1Q16676 465 aa14.78□□□□□ -0.04
VPS35-206ENST00000565228 CDC42BPBQ9Y5S2 1711 aa14.75□□□□□ -0.05
VPS35-206ENST00000565228 TEX14Q8IWB6 1497 aa14.75□□□□□ -0.05
VPS35-206ENST00000565228 TIAM1Q13009 1591 aa14.74□□□□□ -0.05
VPS35-206ENST00000565228 KDM4FA0A1W2PPD8 638 aa14.74□□□□□ -0.05
VPS35-206ENST00000565228 KANK4Q5T7N3 995 aaPredicted RBP14.74□□□□□ -0.05
VPS35-206ENST00000565228 PLCH2O75038 1416 aa14.74□□□□□ -0.05
VPS35-206ENST00000565228 FRMPD1Q5SYB0 1578 aa14.73□□□□□ -0.05
VPS35-206ENST00000565228 CDC42BPAQ5VT25 1732 aa14.73□□□□□ -0.05
VPS35-206ENST00000565228 MYO5CQ9NQX4 1742 aa14.72□□□□□ -0.05
VPS35-206ENST00000565228 ARAP3Q8WWN8 1544 aa14.71□□□□□ -0.05
VPS35-206ENST00000565228 CDK11AQ9UQ88 783 aaPredicted RBP14.71□□□□□ -0.05
VPS35-206ENST00000565228 FANCAO15360 1455 aa14.7□□□□□ -0.06
VPS35-206ENST00000565228 NEO1Q92859 1461 aa14.7□□□□□ -0.06
VPS35-206ENST00000565228 GPATCH8Q9UKJ3 1502 aaKnown RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms