RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 RUSC2Q8N2Y8 1516 aa46.96■■■■■ 5.11
ATPAF1-201ENST00000329231 PRG4Q92954 1404 aaPredicted RBP46.89■■■■■ 5.1
ATPAF1-201ENST00000329231 KIAA0586Q9BVV6 1533 aa46.89■■■■■ 5.1
ATPAF1-201ENST00000329231 RAPGEF2Q9Y4G8 1499 aa46.73■■■■■ 5.07
ATPAF1-201ENST00000329231 TRHP20396 242 aaPredicted RBP46.62■■■■■ 5.05
ATPAF1-201ENST00000329231 IQGAP2Q13576 1575 aa46.53■■■■■ 5.04
ATPAF1-201ENST00000329231 PRXQ9BXM0 1461 aa46.45■■■■■ 5.03
ATPAF1-201ENST00000329231 CARMIL2Q6F5E8 1435 aa46.44■■■■■ 5.02
ATPAF1-201ENST00000329231 CSRNP3Q8WYN3 585 aa46.36■■■■■ 5.01
ATPAF1-201ENST00000329231 EEA1Q15075 1411 aa46.34■■■■■ 5.01
ATPAF1-201ENST00000329231 PTPRGP23470 1445 aa46.3■■■■■ 5
ATPAF1-201ENST00000329231 TNIKQ9UKE5 1360 aa46.3■■■■■ 5
ATPAF1-201ENST00000329231 UGGT2Q9NYU1 1516 aa46.28■■■■■ 5
ATPAF1-201ENST00000329231 CHIC1Q5VXU3 224 aa46.27■■■■■ 5
ATPAF1-201ENST00000329231 DISP1Q96F81 1524 aa46.23■■■■■ 4.99
ATPAF1-201ENST00000329231 NPM1P06748 294 aaKnown RBP eCLIP46.23■■■■■ 4.99
ATPAF1-201ENST00000329231 CTTNBP2Q8WZ74 1663 aa46.22■■■■■ 4.99
ATPAF1-201ENST00000329231 TTBK1Q5TCY1 1321 aaPredicted RBP46.19■■■■■ 4.98
ATPAF1-201ENST00000329231 ADCY10Q96PN6 1610 aa46.17■■■■■ 4.98
ATPAF1-201ENST00000329231 FAM9AQ8IZU1 332 aaPredicted RBP46.1■■■■■ 4.97
ATPAF1-201ENST00000329231 KIAA0556O60303 1618 aa46.08■■■■■ 4.97
ATPAF1-201ENST00000329231 GOLGA3Q08378 1498 aa46.03■■■■■ 4.96
ATPAF1-201ENST00000329231 MAPKBP1O60336 1514 aa46■■■■■ 4.95
ATPAF1-201ENST00000329231 UACAQ9BZF9 1416 aa45.97■■■■■ 4.95
ATPAF1-201ENST00000329231 UHRF1BP1LA0JNW5 1464 aa45.94■■■■■ 4.95
ATPAF1-201ENST00000329231 ABCC2Q92887 1545 aa45.92■■■■■ 4.94
ATPAF1-201ENST00000329231 ABCC10Q5T3U5 1492 aa45.86■■■■■ 4.93
ATPAF1-201ENST00000329231 KIF21BO75037 1637 aa45.82■■■■■ 4.93
ATPAF1-201ENST00000329231 FAM69CQ0P6D2 419 aa45.81■■■■■ 4.92
ATPAF1-201ENST00000329231 KIF13AQ9H1H9 1805 aa45.8■■■■■ 4.92
ATPAF1-201ENST00000329231 DIP2BQ9P265 1576 aa45.71■■■■■ 4.91
ATPAF1-201ENST00000329231 KDM5BQ9UGL1 1544 aa45.71■■■■■ 4.91
ATPAF1-201ENST00000329231 PLB1Q6P1J6 1458 aa45.69■■■■■ 4.91
ATPAF1-201ENST00000329231 P3H3Q8IVL6 736 aa45.68■■■■■ 4.9
ATPAF1-201ENST00000329231 ASXL2Q76L83 1435 aa45.67■■■■■ 4.9
ATPAF1-201ENST00000329231 SAMD9Q5K651 1589 aa45.63■■■■■ 4.9
ATPAF1-201ENST00000329231 ABCA8O94911 1581 aa45.61■■■■■ 4.89
ATPAF1-201ENST00000329231 RANGAP1P46060 587 aaPredicted RBP45.58■■■■■ 4.89
ATPAF1-201ENST00000329231 ZCCHC11Q5TAX3 1644 aaKnown RBP45.56■■■■■ 4.88
ATPAF1-201ENST00000329231 UBTFP17480 764 aaKnown RBP45.54■■■■■ 4.88
ATPAF1-201ENST00000329231 EHMT2Q96KQ7 1210 aa45.52■■■■■ 4.88
ATPAF1-201ENST00000329231 GLI2P10070 1586 aa45.42■■■■■ 4.86
ATPAF1-201ENST00000329231 EFCAB5A4FU69 1503 aa45.41■■■■■ 4.86
ATPAF1-201ENST00000329231 EPRSP07814 1512 aaKnown RBP45.39■■■■■ 4.86
ATPAF1-201ENST00000329231 FHOD3Q2V2M9 1422 aa45.39■■■■■ 4.86
ATPAF1-201ENST00000329231 WDR7Q9Y4E6 1490 aa45.37■■■■■ 4.85
ATPAF1-201ENST00000329231 TSPOAP1O95153 1857 aa45.32■■■■■ 4.84
ATPAF1-201ENST00000329231 RAPGEF6Q8TEU7 1601 aa45.3■■■■■ 4.84
ATPAF1-201ENST00000329231 ARID3CA6NKF2 412 aa45.27■■■■■ 4.84
ATPAF1-201ENST00000329231 ATP10BO94823 1461 aa45.26■■■■■ 4.84
ATPAF1-201ENST00000329231 KCNH8Q96L42 1107 aa45.18■■■■■ 4.82
ATPAF1-201ENST00000329231 MAP3K4Q9Y6R4 1608 aa45.17■■■■■ 4.82
ATPAF1-201ENST00000329231 NUP153P49790 1475 aaKnown RBP45.15■■■■■ 4.82
ATPAF1-201ENST00000329231 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP45.12■■■■■ 4.81
ATPAF1-201ENST00000329231 HNRNPUL2Q1KMD3 747 aaKnown RBP45.12■■■■■ 4.81
ATPAF1-201ENST00000329231 PPRC1Q5VV67 1664 aaKnown RBP45.12■■■■■ 4.81
ATPAF1-201ENST00000329231 KDM6BO15054 1643 aa45.11■■■■■ 4.81
ATPAF1-201ENST00000329231 ARHGAP35Q9NRY4 1499 aa45.1■■■■■ 4.81
ATPAF1-201ENST00000329231 TEX14Q8IWB6 1497 aa45.07■■■■■ 4.81
ATPAF1-201ENST00000329231 FMN1Q68DA7 1419 aa45.03■■■■■ 4.8
ATPAF1-201ENST00000329231 CD109Q6YHK3 1445 aa45.01■■■■■ 4.8
ATPAF1-201ENST00000329231 CFAP43Q8NDM7 1665 aa44.99■■■■■ 4.79
ATPAF1-201ENST00000329231 MAGI3Q5TCQ9 1506 aa44.93■■■■■ 4.78
ATPAF1-201ENST00000329231 PLEKHD1A6NEE1 506 aa44.9■■■■■ 4.78
ATPAF1-201ENST00000329231 ATP1B4Q9UN42 357 aaPredicted RBP44.84■■■■■ 4.77
ATPAF1-201ENST00000329231 ABCA9Q8IUA7 1624 aa44.82■■■■■ 4.77
ATPAF1-201ENST00000329231 HECW1Q76N89 1606 aa44.81■■■■■ 4.76
ATPAF1-201ENST00000329231 COL17A1Q9UMD9 1497 aaPredicted RBP44.79■■■■■ 4.76
ATPAF1-201ENST00000329231 CDK13Q14004 1512 aaKnown RBP44.77■■■■■ 4.76
ATPAF1-201ENST00000329231 CLIP1P30622 1438 aa44.74■■■■■ 4.75
ATPAF1-201ENST00000329231 CDK11AQ9UQ88 783 aaPredicted RBP44.65■■■■■ 4.74
ATPAF1-201ENST00000329231 PHLDB1Q86UU1 1377 aa44.62■■■■■ 4.73
ATPAF1-201ENST00000329231 CASKIN1Q8WXD9 1431 aa44.61■■■■■ 4.73
ATPAF1-201ENST00000329231 AEBP2Q6ZN18 517 aaPredicted RBP44.57■■■■■ 4.73
ATPAF1-201ENST00000329231 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP44.55■■■■■ 4.72
ATPAF1-201ENST00000329231 ARAP3Q8WWN8 1544 aa44.55■■■■■ 4.72
ATPAF1-201ENST00000329231 NEO1Q92859 1461 aa44.55■■■■■ 4.72
ATPAF1-201ENST00000329231 PCF11O94913 1555 aaKnown RBP44.54■■■■■ 4.72
ATPAF1-201ENST00000329231 CCDC18Q5T9S5 1454 aa44.48■■■■■ 4.71
ATPAF1-201ENST00000329231 FYCO1Q9BQS8 1478 aa44.47■■■■■ 4.71
ATPAF1-201ENST00000329231 TTC37Q6PGP7 1564 aa44.47■■■■■ 4.71
ATPAF1-201ENST00000329231 LRRIQ1Q96JM4 1722 aa44.45■■■■■ 4.71
ATPAF1-201ENST00000329231 TROQ12816 1431 aaPredicted RBP44.45■■■■■ 4.71
ATPAF1-201ENST00000329231 CEP162Q5TB80 1403 aa44.43■■■■■ 4.7
ATPAF1-201ENST00000329231 FANCAO15360 1455 aa44.39■■■■■ 4.7
ATPAF1-201ENST00000329231 LOC105371045A0A1W2PR82 267 aa44.37■■■■■ 4.69
ATPAF1-201ENST00000329231 KIF14Q15058 1648 aa44.35■■■■■ 4.69
ATPAF1-201ENST00000329231 CFAP74Q9C0B2 1584 aa44.35■■■■■ 4.69
ATPAF1-201ENST00000329231 PLCH2O75038 1416 aa44.33■■■■■ 4.69
ATPAF1-201ENST00000329231 AKNAQ7Z591 1439 aa44.33■■■■■ 4.69
ATPAF1-201ENST00000329231 RAPGEF3O95398 923 aa44.32■■■■■ 4.69
ATPAF1-201ENST00000329231 KDM4FA0A1W2PPD8 638 aa44.29■■■■■ 4.68
ATPAF1-201ENST00000329231 DENND4BO75064 1496 aaPredicted RBP44.24■■■■■ 4.67
ATPAF1-201ENST00000329231 MYO5CQ9NQX4 1742 aa44.21■■■■■ 4.67
ATPAF1-201ENST00000329231 EFCAB2Q5VUJ9 269 aa44.21■■■■■ 4.67
ATPAF1-201ENST00000329231 FRMPD1Q5SYB0 1578 aa44.17■■■■■ 4.66
ATPAF1-201ENST00000329231 ADGRL1O94910 1474 aa44.15■■■■■ 4.66
ATPAF1-201ENST00000329231 ARHGAP5Q13017 1502 aa44.09■■■■■ 4.65
ATPAF1-201ENST00000329231 SCAPERQ9BY12 1400 aa44.09■■■■■ 4.65
ATPAF1-201ENST00000329231 RICTORQ6R327 1708 aa44.08■■■■■ 4.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms