RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 LCE3AQ5TA76 89 aa9.96□□□□□ -0.82
ATPAF1-201ENST00000329231 A6NED7 52 aa9.93□□□□□ -0.82
ATPAF1-201ENST00000329231 PP632Q6XCG6 107 aa9.91□□□□□ -0.82
ATPAF1-201ENST00000329231 DSTQ03001 7570 aaKnown RBP9.85□□□□□ -0.83
ATPAF1-201ENST00000329231 MT1LQ93083 61 aa9.84□□□□□ -0.83
ATPAF1-201ENST00000329231 MT1MQ8N339 61 aa9.77□□□□□ -0.85
ATPAF1-201ENST00000329231 KRTAP25-1Q3LHN0 102 aa9.75□□□□□ -0.85
ATPAF1-201ENST00000329231 KRTAP12-3P60328 96 aa9.6□□□□□ -0.87
ATPAF1-201ENST00000329231 KRTAP4-9Q9BYQ8 210 aa9.57□□□□□ -0.88
ATPAF1-201ENST00000329231 CDC42SE1Q9NRR8 79 aa9.54□□□□□ -0.88
ATPAF1-201ENST00000329231 KRTAP4-3Q9BYR4 195 aa9.51□□□□□ -0.89
ATPAF1-201ENST00000329231 LCE4AQ5TA78 99 aa9.44□□□□□ -0.9
ATPAF1-201ENST00000329231 KRTAP23-1A1A580 65 aa9.42□□□□□ -0.9
ATPAF1-201ENST00000329231 ROMO1P60602 79 aa9.38□□□□□ -0.91
ATPAF1-201ENST00000329231 LCE1DQ5T752 114 aa9.38□□□□□ -0.91
ATPAF1-201ENST00000329231 KRTAP4-7Q9BYR0 210 aa9.33□□□□□ -0.92
ATPAF1-201ENST00000329231 MT4P47944 62 aa9.29□□□□□ -0.92
ATPAF1-201ENST00000329231 KRTAP5-4Q6L8H1 288 aa9.25□□□□□ -0.93
ATPAF1-201ENST00000329231 HMCN1Q96RW7 5635 aa9.14□□□□□ -0.95
ATPAF1-201ENST00000329231 KRTAP19-4Q3LI73 84 aa9.12□□□□□ -0.95
ATPAF1-201ENST00000329231 GPR98Q8WXG9 6306 aa9.09□□□□□ -0.95
ATPAF1-201ENST00000329231 KRTAP15-1Q3LI76 137 aa9.07□□□□□ -0.96
ATPAF1-201ENST00000329231 KRTAP4-6Q9BYQ5 205 aa9.03□□□□□ -0.96
ATPAF1-201ENST00000329231 KRTAP5-5Q701N2 237 aaPredicted RBP8.94□□□□□ -0.98
ATPAF1-201ENST00000329231 BRK1Q8WUW1 75 aa8.9□□□□□ -0.98
ATPAF1-201ENST00000329231 LCE3CQ5T5A8 94 aa8.85□□□□□ -0.99
ATPAF1-201ENST00000329231 LOC100996750A0A140TA64 210 aa8.84□□□□□ -0.99
ATPAF1-201ENST00000329231 AHNAK2Q8IVF2 5795 aa8.75□□□□□ -1.01
ATPAF1-201ENST00000329231 KRTAP12-4P60329 112 aa8.74□□□□□ -1.01
ATPAF1-201ENST00000329231 KRTAP20-2Q3LI61 65 aa8.73□□□□□ -1.01
ATPAF1-201ENST00000329231 SPRR5A0A1B0GTR4 108 aa8.72□□□□□ -1.01
ATPAF1-201ENST00000329231 KRTAP5-10Q6L8G5 202 aa8.65□□□□□ -1.02
ATPAF1-201ENST00000329231 SYNE1Q8NF91 8797 aaKnown RBP8.5□□□□□ -1.05
ATPAF1-201ENST00000329231 KRTAP5-3Q6L8H2 238 aa8.49□□□□□ -1.05
ATPAF1-201ENST00000329231 PMAIP1Q13794 54 aa8.39□□□□□ -1.07
ATPAF1-201ENST00000329231 MT1AP04731 61 aa8.38□□□□□ -1.07
ATPAF1-201ENST00000329231 KRTAP9-6A8MVA2 160 aa8.32□□□□□ -1.08
ATPAF1-201ENST00000329231 KRTAP5-7Q6L8G8 165 aa8.32□□□□□ -1.08
ATPAF1-201ENST00000329231 KRTAP6-1Q3LI64 71 aa8.31□□□□□ -1.08
ATPAF1-201ENST00000329231 KRTAP5-2Q701N4 177 aa8.13□□□□□ -1.11
ATPAF1-201ENST00000329231 KRTAP9-4Q9BYQ2 154 aa8.09□□□□□ -1.11
ATPAF1-201ENST00000329231 PRO0628Q9UI54 55 aa8.06□□□□□ -1.12
ATPAF1-201ENST00000329231 PRAC1Q96KF2 57 aa7.99□□□□□ -1.13
ATPAF1-201ENST00000329231 KRTAP4-11Q9BYQ6 195 aa7.96□□□□□ -1.14
ATPAF1-201ENST00000329231 KRTAP6-2Q3LI66 62 aa7.93□□□□□ -1.14
ATPAF1-201ENST00000329231 MT3P25713 68 aa7.68□□□□□ -1.18
ATPAF1-201ENST00000329231 KRTAP5-8O75690 187 aa7.67□□□□□ -1.18
ATPAF1-201ENST00000329231 KTN1-AS1Q86SY8 53 aa7.63□□□□□ -1.19
ATPAF1-201ENST00000329231 OBSCNQ5VST9 7968 aa7.46□□□□□ -1.21
ATPAF1-201ENST00000329231 KRTAP9-9Q9BYP9 154 aa7.29□□□□□ -1.24
ATPAF1-201ENST00000329231 SVIPQ8NHG7 77 aa7.27□□□□□ -1.25
ATPAF1-201ENST00000329231 KRTAP5-1Q6L8H4 278 aa7.26□□□□□ -1.25
ATPAF1-201ENST00000329231 MUC5BQ9HC84 5762 aaPredicted RBP7.17□□□□□ -1.26
ATPAF1-201ENST00000329231 MUC5ACP98088 5654 aa7.15□□□□□ -1.26
ATPAF1-201ENST00000329231 AHNAKQ09666 5890 aaKnown RBP7.12□□□□□ -1.27
ATPAF1-201ENST00000329231 LCE1EQ5T753 118 aa7.03□□□□□ -1.28
ATPAF1-201ENST00000329231 KRTAP4-12Q9BQ66 201 aa6.89□□□□□ -1.31
ATPAF1-201ENST00000329231 H3BS24 57 aa6.83□□□□□ -1.32
ATPAF1-201ENST00000329231 LUZP6Q538Z0 58 aa6.72□□□□□ -1.33
ATPAF1-201ENST00000329231 LCE1BQ5T7P3 118 aa6.6□□□□□ -1.35
ATPAF1-201ENST00000329231 KRTAP4-2Q9BYR5 136 aa6.6□□□□□ -1.35
ATPAF1-201ENST00000329231 LCE1CQ5T751 118 aa6.52□□□□□ -1.37
ATPAF1-201ENST00000329231 LCE3DQ9BYE3 92 aa6.46□□□□□ -1.38
ATPAF1-201ENST00000329231 LCE3EQ5T5B0 92 aa6.14□□□□□ -1.43
ATPAF1-201ENST00000329231 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.94□□□□□ -1.46
ATPAF1-201ENST00000329231 KRTAP5-11Q6L8G4 156 aa5.89□□□□□ -1.47
ATPAF1-201ENST00000329231 LCE1FQ5T754 118 aa5.72□□□□□ -1.49
ATPAF1-201ENST00000329231 NDUFAF8A1L188 74 aa5.68□□□□□ -1.5
ATPAF1-201ENST00000329231 KRTAP21-2Q3LI59 83 aa5.47□□□□□ -1.53
ATPAF1-201ENST00000329231 PHGR1C9JFL3 82 aa5.08□□□□□ -1.6
ATPAF1-201ENST00000329231 KRTAP4-4Q9BYR3 166 aa4.98□□□□□ -1.61
ATPAF1-201ENST00000329231 PRM1P04553 51 aa4.8□□□□□ -1.64
ATPAF1-201ENST00000329231 A0A0A0MQY5 61 aa4.65□□□□□ -1.67
ATPAF1-201ENST00000329231 INE1O15225 51 aa4.64□□□□□ -1.67
ATPAF1-201ENST00000329231 MUC19Q7Z5P9 8384 aa4.6□□□□□ -1.67
ATPAF1-201ENST00000329231 KRTAP21-1Q3LI58 79 aa3.85□□□□□ -1.79
ATPAF1-201ENST00000329231 MUC16Q8WXI7 14507 aa3.33□□□□□ -1.88
Retrieved 77 of 20,778 RNA–protein pairs in 9.7 ms