RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	KCC4	P25389	1037 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	ASF1	P32447	279 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	CSE4	P36012	229 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	SET3	P36124	751 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	THI6	P41835	540 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	SSL2	Q00578	843 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	YML119W	Q03208	357 aa		4.19	□□□□□ -1.74
SSM4	YIL030C	NIP1	P32497	812 aa	Known RBP	4.18	□□□□□ -1.74
SSM4	YIL030C	MAL33	P38157	468 aa		4.18	□□□□□ -1.74
SSM4	YIL030C	YGL242C	P53066	181 aa		4.18	□□□□□ -1.74
SSM4	YIL030C	YGL082W	P53155	381 aa		4.18	□□□□□ -1.74
SSM4	YIL030C	NCS2	P53923	493 aa	Predicted RBP	4.18	□□□□□ -1.74
SSM4	YIL030C	BMS1	Q08965	1183 aa	Known RBP	4.18	□□□□□ -1.74
SSM4	YIL030C	SRP40	P32583	406 aa	Predicted RBP	4.18	□□□□□ -1.74
SSM4	YIL030C	DNM1	P54861	757 aa		4.18	□□□□□ -1.74
SSM4	YIL030C	ETT1	Q08421	412 aa	Known RBP	4.18	□□□□□ -1.74
SSM4	YIL030C	POM152	P39685	1337 aa		4.18	□□□□□ -1.74
SSM4	YIL030C	BCD1	P38772	366 aa		4.18	□□□□□ -1.74
SSM4	YIL030C	POB3	Q04636	552 aa	Known RBP	4.18	□□□□□ -1.74
SSM4	YIL030C	BRE1	Q07457	700 aa	Known RBP	4.18	□□□□□ -1.74
SSM4	YIL030C	YPR204W	Q08995	1032 aa		4.18	□□□□□ -1.74
SSM4	YIL030C	GSY2	P27472	705 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	AOS1	Q06624	347 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	PIF1	P07271	859 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	DPB3	P27344	201 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	ECM1	P39715	212 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	DAK2	P43550	591 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	VPS4	P52917	437 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	SPO1	P53541	631 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	CPA2	P03965	1118 aa	Known RBP	4.17	□□□□□ -1.74
SSM4	YIL030C	KTR1	P27810	393 aa	Known RBP	4.17	□□□□□ -1.74
SSM4	YIL030C	FBP26	P32604	452 aa		4.17	□□□□□ -1.74
SSM4	YIL030C	MRP7	P12687	371 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	BMH1	P29311	267 aa	Known RBP	4.16	□□□□□ -1.74
SSM4	YIL030C	VPS60	Q03390	229 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	RPS24A	P0CX31	135 aa	Known RBP	4.16	□□□□□ -1.74
SSM4	YIL030C	RPS24B	P0CX32	135 aa	Known RBP	4.16	□□□□□ -1.74
SSM4	YIL030C	PRX1	P34227	261 aa	Known RBP	4.16	□□□□□ -1.74
SSM4	YIL030C	SIC1	P38634	284 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	EFM4	P40516	257 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	PXA1	P41909	870 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	DCD1	P06773	312 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	MPH3	P0CE00	602 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	YMR196W	Q04336	1088 aa		4.16	□□□□□ -1.74
SSM4	YIL030C	CYC8	P14922	966 aa		4.15	□□□□□ -1.74
SSM4	YIL030C	GEF1	P37020	779 aa		4.15	□□□□□ -1.74
SSM4	YIL030C	ECM29	P38737	1868 aa		4.15	□□□□□ -1.74
SSM4	YIL030C	UBR2	Q07963	1872 aa		4.15	□□□□□ -1.75
SSM4	YIL030C	RDS1	P25611	832 aa		4.15	□□□□□ -1.75
SSM4	YIL030C	BIK1	P11709	440 aa		4.14	□□□□□ -1.75
SSM4	YIL030C	RAD16	P31244	790 aa		4.14	□□□□□ -1.75
SSM4	YIL030C	MNN4	P36044	1178 aa		4.14	□□□□□ -1.75
SSM4	YIL030C	MCM16	Q12262	181 aa		4.14	□□□□□ -1.75
SSM4	YIL030C	LPD1	P09624	499 aa	Known RBP	4.14	□□□□□ -1.75
SSM4	YIL030C	PYC1	P11154	1178 aa	Known RBP	4.14	□□□□□ -1.75
SSM4	YIL030C	MLC1	P53141	149 aa		4.14	□□□□□ -1.75
SSM4	YIL030C	GYP5	Q12344	894 aa		4.14	□□□□□ -1.75
SSM4	YIL030C	GPA1	P08539	472 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
SSM4	YIL030C	UBP10	P53874	792 aa	Predicted RBP	4.13	□□□□□ -1.75
SSM4	YIL030C	NGL3	Q03210	505 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	NSE3	Q05541	303 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	RPL19A	P0CX82	189 aa	Known RBP	4.13	□□□□□ -1.75
SSM4	YIL030C	RPL19B	P0CX83	189 aa	Predicted RBP	4.13	□□□□□ -1.75
SSM4	YIL030C	RPL5	P26321	297 aa	Known RBP	4.13	□□□□□ -1.75
SSM4	YIL030C	MCM4	P30665	933 aa	Known RBP	4.13	□□□□□ -1.75
SSM4	YIL030C	SWI3	P32591	825 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	RCR1	P38212	213 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	RIA1	P53893	1110 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	RPL22B	P56628	122 aa	Known RBP	4.13	□□□□□ -1.75
SSM4	YIL030C	COG8	Q04632	607 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	DCS2	Q12123	353 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	APC11	Q12157	165 aa		4.13	□□□□□ -1.75
SSM4	YIL030C	YSW1	P38280	609 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	HFM1	P51979	1187 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	WAR1	Q03631	944 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	MAG2	Q06436	670 aa	Known RBP	4.12	□□□□□ -1.75
SSM4	YIL030C	IRC3	Q06683	689 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	PHM7	Q12252	991 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	RIX1	P38883	763 aa	Predicted RBP	4.12	□□□□□ -1.75
SSM4	YIL030C	AIP1	P46680	615 aa	Known RBP	4.12	□□□□□ -1.75
SSM4	YIL030C	HMI1	Q12039	706 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	PTC5	Q12511	572 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	HIR1	P32479	840 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	HAL5	P38970	855 aa	Known RBP	4.12	□□□□□ -1.75
SSM4	YIL030C	NUG1	P40010	520 aa	Known RBP	4.12	□□□□□ -1.75
SSM4	YIL030C	ALD2	P47771	506 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	UBP16	Q02863	499 aa		4.12	□□□□□ -1.75
SSM4	YIL030C	MYO3	P36006	1272 aa		4.11	□□□□□ -1.75
SSM4	YIL030C	TPM2	P40414	161 aa		4.11	□□□□□ -1.75
SSM4	YIL030C	PIB2	P53191	635 aa		4.11	□□□□□ -1.75
SSM4	YIL030C	NUR1	Q12066	484 aa		4.11	□□□□□ -1.75
SSM4	YIL030C	YKT6	P36015	200 aa	Known RBP	4.11	□□□□□ -1.75
SSM4	YIL030C	LSC1	P53598	329 aa	Known RBP	4.11	□□□□□ -1.75
SSM4	YIL030C	YKL068W-A	Q3E826	78 aa		4.11	□□□□□ -1.75
SSM4	YIL030C	YDJ1	P25491	409 aa	Known RBP	4.1	□□□□□ -1.75
SSM4	YIL030C	URA1	P28272	314 aa	Predicted RBP	4.1	□□□□□ -1.75
SSM4	YIL030C	EFM2	P38347	419 aa		4.1	□□□□□ -1.75
SSM4	YIL030C	CRG1	P38892	291 aa	RIP-Chip data	4.1	□□□□□ -1.75	RIP-Chip
SSM4	YIL030C	HUL4	P40985	892 aa		4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 44.1 ms