RNA–Protein interactions for RNA: YPL173W

MRPL40, Transcript of Mitochondrial ribosomal protein of the large subunit, yeast

Gene MRPL40, Length 894 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MRPL40	YPL173W	IRA2	P19158	3079 aa		0.89	□□□□□ -2.27
MRPL40	YPL173W	PDR15	Q04182	1529 aa	Known RBP	0.89	□□□□□ -2.27
MRPL40	YPL173W	PAU16	P35994	123 aa		0.88	□□□□□ -2.27
MRPL40	YPL173W	PAU15	P40585	124 aa		0.88	□□□□□ -2.27
MRPL40	YPL173W	RPO31	P04051	1460 aa		0.87	□□□□□ -2.27
MRPL40	YPL173W	AUA1	P32450	94 aa		0.87	□□□□□ -2.27
MRPL40	YPL173W	HUR1	P45820	110 aa		0.87	□□□□□ -2.27
MRPL40	YPL173W	LSM6	Q06406	86 aa	Known RBP	0.87	□□□□□ -2.27
MRPL40	YPL173W	GNA1	P43577	159 aa	Predicted RBP	0.86	□□□□□ -2.27
MRPL40	YPL173W	MIC10	Q96VH5	97 aa		0.86	□□□□□ -2.27
MRPL40	YPL173W	LAA1	P39526	2014 aa		0.86	□□□□□ -2.27
MRPL40	YPL173W	RPA190	P10964	1664 aa	Known RBP	0.85	□□□□□ -2.27
MRPL40	YPL173W	YLR255C	O13574	117 aa		0.85	□□□□□ -2.27
MRPL40	YPL173W	CDC25	P04821	1589 aa		0.85	□□□□□ -2.27
MRPL40	YPL173W	YGR164W	P53291	111 aa		0.85	□□□□□ -2.27
MRPL40	YPL173W	YMR103C	Q04436	120 aa		0.85	□□□□□ -2.27
MRPL40	YPL173W	YPK9	Q12697	1472 aa		0.85	□□□□□ -2.27
MRPL40	YPL173W	VMA21	P41806	77 aa		0.84	□□□□□ -2.27
MRPL40	YPL173W	RPS12	P48589	143 aa	Known RBP	0.84	□□□□□ -2.27
MRPL40	YPL173W	DNF2	Q12675	1612 aa		0.84	□□□□□ -2.28
MRPL40	YPL173W	NTE1	Q04958	1679 aa		0.84	□□□□□ -2.28
MRPL40	YPL173W	LYS2	P07702	1392 aa		0.83	□□□□□ -2.28
MRPL40	YPL173W	IRA1	P18963	3092 aa		0.83	□□□□□ -2.28
MRPL40	YPL173W	GEA2	P39993	1459 aa	Known RBP	0.82	□□□□□ -2.28
MRPL40	YPL173W	YHR138C	P38841	114 aa	Predicted RBP	0.82	□□□□□ -2.28
MRPL40	YPL173W	YOL118C	Q08259	102 aa		0.82	□□□□□ -2.28
MRPL40	YPL173W	YCL048W-A	Q2V2Q2	79 aa		0.82	□□□□□ -2.28
MRPL40	YPL173W	YLR419W	Q06698	1435 aa	Known RBP	0.81	□□□□□ -2.28
MRPL40	YPL173W	YCR101C	P25607	182 aa		0.81	□□□□□ -2.28
MRPL40	YPL173W	IMP2	P46972	177 aa		0.81	□□□□□ -2.28
MRPL40	YPL173W	SWC7	Q06707	132 aa		0.81	□□□□□ -2.28
MRPL40	YPL173W	YOS1	Q3E834	85 aa		0.81	□□□□□ -2.28
MRPL40	YPL173W	KRE5	P22023	1365 aa		0.81	□□□□□ -2.28
MRPL40	YPL173W	THO2	P53552	1597 aa	Known RBP	0.8	□□□□□ -2.28
MRPL40	YPL173W	UBC4	P15731	148 aa		0.8	□□□□□ -2.28
MRPL40	YPL173W	RGI1	P40043	161 aa	Predicted RBP	0.8	□□□□□ -2.28
MRPL40	YPL173W	ESC1	Q03661	1658 aa	Known RBP	0.8	□□□□□ -2.28
MRPL40	YPL173W	URB1	P34241	1764 aa	Known RBP	0.8	□□□□□ -2.28
MRPL40	YPL173W	TSC11	P40061	1430 aa		0.8	□□□□□ -2.28
MRPL40	YPL173W	YCF1	P39109	1515 aa	Known RBP	0.79	□□□□□ -2.28
MRPL40	YPL173W	CCW14	O13547	238 aa		0.79	□□□□□ -2.28
MRPL40	YPL173W	SRB6	P32570	121 aa		0.79	□□□□□ -2.28
MRPL40	YPL173W	GCV3	P39726	170 aa	Predicted RBP	0.79	□□□□□ -2.28
MRPL40	YPL173W	SEC16	P48415	2195 aa	Known RBP	0.79	□□□□□ -2.28
MRPL40	YPL173W	BPT1	P14772	1559 aa		0.79	□□□□□ -2.28
MRPL40	YPL173W	YBR090C	P38253	122 aa		0.78	□□□□□ -2.28
MRPL40	YPL173W	YHR173C	P38864	112 aa		0.78	□□□□□ -2.28
MRPL40	YPL173W	YDR210W	Q03482	75 aa		0.78	□□□□□ -2.28
MRPL40	YPL173W	YMR090W	Q04304	227 aa	Known RBP	0.78	□□□□□ -2.28
MRPL40	YPL173W	UBC5	P15732	148 aa		0.77	□□□□□ -2.29
MRPL40	YPL173W	PAU5	P43575	122 aa		0.77	□□□□□ -2.29
MRPL40	YPL173W	YPL038W-A	Q3E7B4	63 aa		0.77	□□□□□ -2.29
MRPL40	YPL173W	SNF2	P22082	1703 aa		0.77	□□□□□ -2.29
MRPL40	YPL173W	URA2	P07259	2214 aa	Known RBP	0.76	□□□□□ -2.29
MRPL40	YPL173W	PEP1	P32319	1579 aa		0.76	□□□□□ -2.29
MRPL40	YPL173W	SHU1	P38751	150 aa		0.76	□□□□□ -2.29
MRPL40	YPL173W	YIL086C	P40503	102 aa		0.76	□□□□□ -2.29
MRPL40	YPL173W	YCR095W-A	Q3E787	52 aa		0.76	□□□□□ -2.29
MRPL40	YPL173W	TOP2	P06786	1428 aa	Known RBP	0.75	□□□□□ -2.29
MRPL40	YPL173W	RSM19	P53733	91 aa	Predicted RBP	0.75	□□□□□ -2.29
MRPL40	YPL173W	YBR072C-A	Q3E794	53 aa		0.74	□□□□□ -2.29
MRPL40	YPL173W	PDR11	P40550	1411 aa		0.73	□□□□□ -2.29
MRPL40	YPL173W	SEC7	P11075	2009 aa	Known RBP	0.73	□□□□□ -2.29
MRPL40	YPL173W	PAU6	P0CE90	120 aa		0.73	□□□□□ -2.29
MRPL40	YPL173W	PAU18	P0CE91	120 aa		0.73	□□□□□ -2.29
MRPL40	YPL173W	FYV7	Q12247	151 aa		0.73	□□□□□ -2.29
MRPL40	YPL173W	YDR010C	Q12426	110 aa		0.73	□□□□□ -2.29
MRPL40	YPL173W	YOL164W-A	Q3E7A5	60 aa		0.73	□□□□□ -2.29
MRPL40	YPL173W	YRF1-6	P53819	1859 aa		0.73	□□□□□ -2.29
MRPL40	YPL173W	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.73	□□□□□ -2.29
MRPL40	YPL173W	SSK2	P53599	1579 aa		0.72	□□□□□ -2.29
MRPL40	YPL173W	MPC2	P38857	129 aa		0.72	□□□□□ -2.29
MRPL40	YPL173W	SNA2	P56508	79 aa		0.72	□□□□□ -2.29
MRPL40	YPL173W	KSH1	Q8TGJ3	72 aa		0.72	□□□□□ -2.29
MRPL40	YPL173W	DYN1	P36022	4092 aa		0.72	□□□□□ -2.29
MRPL40	YPL173W	CAT8	P39113	1433 aa		0.72	□□□□□ -2.29
MRPL40	YPL173W	BUD4	P47136	1447 aa		0.72	□□□□□ -2.29
MRPL40	YPL173W	SEN1	Q00416	2231 aa	Known RBP	0.71	□□□□□ -2.3
MRPL40	YPL173W	ROX3	P25046	220 aa		0.71	□□□□□ -2.3
MRPL40	YPL173W	MRX7	P53869	86 aa		0.71	□□□□□ -2.3
MRPL40	YPL173W	COX12	Q01519	83 aa		0.71	□□□□□ -2.3
MRPL40	YPL173W	MIX14	Q04341	121 aa		0.71	□□□□□ -2.3
MRPL40	YPL173W	MEC1	P38111	2368 aa		0.71	□□□□□ -2.3
MRPL40	YPL173W	TY3B-G	Q99315	1547 aa		0.7	□□□□□ -2.3
MRPL40	YPL173W	RPA12	P32529	125 aa	Known RBP	0.7	□□□□□ -2.3
MRPL40	YPL173W	YOR289W	Q12012	251 aa	Predicted RBP	0.7	□□□□□ -2.3
MRPL40	YPL173W	COX19	Q3E731	98 aa		0.69	□□□□□ -2.3
MRPL40	YPL173W	YNR034W-A	Q3E841	98 aa		0.69	□□□□□ -2.3
MRPL40	YPL173W	SSN2	P38931	1420 aa		0.69	□□□□□ -2.3
MRPL40	YPL173W	GEA1	P47102	1408 aa	Predicted RBP	0.69	□□□□□ -2.3
MRPL40	YPL173W	TY4B-H	P0C2J7	1802 aa		0.68	□□□□□ -2.3
MRPL40	YPL173W	SRB8	P25648	1427 aa		0.68	□□□□□ -2.3
MRPL40	YPL173W	YBL071C	P38185	102 aa		0.68	□□□□□ -2.3
MRPL40	YPL173W	PDR10	P51533	1564 aa		0.68	□□□□□ -2.3
MRPL40	YPL173W	RRT15	Q3E811	62 aa		0.68	□□□□□ -2.3
MRPL40	YPL173W	TRA1	P38811	3744 aa		0.68	□□□□□ -2.3
MRPL40	YPL173W	CSF1	Q12150	2958 aa		0.68	□□□□□ -2.3
MRPL40	YPL173W	POL1	P13382	1468 aa		0.67	□□□□□ -2.3
MRPL40	YPL173W	HMRA1	P0CY11	126 aa		0.67	□□□□□ -2.3
MRPL40	YPL173W	MRPL38	P35996	138 aa	Predicted RBP	0.67	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 40.8 ms