Protein–RNA interactions for Protein: Q06406

LSM6, U6 snRNA-associated Sm-like protein LSm6, yeastyeast

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LSM6Q06406 NSR1YGR159C 1245 nt13.74□□□□□ -0.21
LSM6Q06406 YML009W-BYML009W-B 477 nt13.17□□□□□ -0.3
LSM6Q06406 MDJ1YFL016C 1536 nt12.81□□□□□ -0.36
LSM6Q06406 NOP1YDL014W 984 nt12.57□□□□□ -0.4
LSM6Q06406 YJL027CYJL027C 417 nt11.8□□□□□ -0.52
LSM6Q06406 SSA3YBL075C 1950 nt11.72□□□□□ -0.53
LSM6Q06406 YBR190WYBR190W 312 nt11.17□□□□□ -0.62
LSM6Q06406 DBP2YNL112W 1641 nt11.04□□□□□ -0.64
LSM6Q06406 SRX1YKL086W 384 nt10.95□□□□□ -0.66
LSM6Q06406 YKL036CYKL036C 393 nt10.9□□□□□ -0.66
LSM6Q06406 RTC3YHR087W 336 nt10.86□□□□□ -0.67
LSM6Q06406 Q0297Q0297 156 nt10.74□□□□□ -0.69
LSM6Q06406 PUT4YOR348C 1884 nt10.66□□□□□ -0.7
LSM6Q06406 TRN1tP(UGG)A 72 nt10.32□□□□□ -0.76
LSM6Q06406 SUF9tP(UGG)F 72 nt10.32□□□□□ -0.76
LSM6Q06406 SUF8tP(UGG)H 72 nt10.32□□□□□ -0.76
LSM6Q06406 tP(UGG)LtP(UGG)L 72 nt10.32□□□□□ -0.76
LSM6Q06406 SUF7tP(UGG)M 72 nt10.32□□□□□ -0.76
LSM6Q06406 tP(UGG)N1tP(UGG)N1 72 nt10.32□□□□□ -0.76
LSM6Q06406 tP(UGG)N2tP(UGG)N2 72 nt10.32□□□□□ -0.76
LSM6Q06406 tP(UGG)O1tP(UGG)O1 72 nt10.32□□□□□ -0.76
LSM6Q06406 SUF11tP(UGG)O2 72 nt10.32□□□□□ -0.76
LSM6Q06406 YCR051WYCR051W 669 nt10.31□□□□□ -0.76
LSM6Q06406 RVS167YDR388W 1449 nt10.31□□□□□ -0.76
LSM6Q06406 POA1YBR022W 534 nt10.25□□□□□ -0.77
LSM6Q06406 SSA4YER103W 1929 nt10.25□□□□□ -0.77
LSM6Q06406 ARE1YCR048W 1833 nt10.23□□□□□ -0.77
LSM6Q06406 SPT5YML010W 3192 nt10.22□□□□□ -0.77
LSM6Q06406 BSC6YOL137W 1494 nt10.18□□□□□ -0.78
LSM6Q06406 CCC1YLR220W 969 nt10.16□□□□□ -0.78
LSM6Q06406 YHR049C-AYHR049C-A 297 nt10.12□□□□□ -0.79
LSM6Q06406 SCJ1YMR214W 1134 nt10.02□□□□□ -0.81
LSM6Q06406 SAH1YER043C 1350 nt10.01□□□□□ -0.81
LSM6Q06406 OPI9YLR338W 858 nt9.92□□□□□ -0.82
LSM6Q06406 BDF1YLR399C 2061 nt9.92□□□□□ -0.82
LSM6Q06406 URN1YPR152C 1398 nt9.89□□□□□ -0.83
LSM6Q06406 BUD23YCR047C 828 nt9.82□□□□□ -0.84
LSM6Q06406 PAC11YDR488C 1602 nt9.8□□□□□ -0.84
LSM6Q06406 TAT1YBR069C 1860 nt9.79□□□□□ -0.84
LSM6Q06406 SHR5YOL110W 714 nt9.76□□□□□ -0.85
LSM6Q06406 RPN10YHR200W 807 nt9.65□□□□□ -0.86
LSM6Q06406 DEP1YAL013W 1218 nt9.65□□□□□ -0.86
LSM6Q06406 PUN1YLR414C 792 nt9.65□□□□□ -0.86
LSM6Q06406 MEP2YNL142W 1500 nt9.65□□□□□ -0.86
LSM6Q06406 RPP1BYDL130W 321 nt9.63□□□□□ -0.87
LSM6Q06406 NAB2YGL122C 1578 nt9.61□□□□□ -0.87
LSM6Q06406 PTC2YER089C 1395 nt9.61□□□□□ -0.87
LSM6Q06406 YOL085CYOL085C 342 nt9.57□□□□□ -0.88
LSM6Q06406 NVJ2YPR091C 2313 nt9.54□□□□□ -0.88
LSM6Q06406 SCS3YGL126W 1143 nt9.52□□□□□ -0.89
LSM6Q06406 tP(UGG)O3tP(UGG)O3 72 nt9.51□□□□□ -0.89
LSM6Q06406 YNL208WYNL208W 600 nt9.48□□□□□ -0.89
LSM6Q06406 DCW1YKL046C 1350 nt9.43□□□□□ -0.9
LSM6Q06406 YJR018WYJR018W 363 nt9.41□□□□□ -0.9
LSM6Q06406 YBR220CYBR220C 1683 nt9.39□□□□□ -0.91
LSM6Q06406 FIS1YIL065C 468 nt9.39□□□□□ -0.91
LSM6Q06406 YMR090WYMR090W 684 nt9.38□□□□□ -0.91
LSM6Q06406 DAL1YIR027C 1383 nt9.35□□□□□ -0.91
LSM6Q06406 PKP1YIL042C 1185 nt9.34□□□□□ -0.91
LSM6Q06406 EMI2YDR516C 1503 nt9.32□□□□□ -0.92
LSM6Q06406 YPS1YLR120C 1710 nt9.32□□□□□ -0.92
LSM6Q06406 YJL225CYJL225C 5277 nt9.3□□□□□ -0.92
LSM6Q06406 YHR165W-AYHR165W-A 312 nt9.27□□□□□ -0.93
LSM6Q06406 FPR4YLR449W 1179 nt9.27□□□□□ -0.93
LSM6Q06406 PET122YER153C 765 nt9.26□□□□□ -0.93
LSM6Q06406 PHO4YFR034C 939 nt9.25□□□□□ -0.93
LSM6Q06406 PCH2YBR186W 1695 nt9.25□□□□□ -0.93
LSM6Q06406 YDJ1YNL064C 1230 nt9.24□□□□□ -0.93
LSM6Q06406 SDH1YKL148C 1923 nt9.23□□□□□ -0.93
LSM6Q06406 SEC11YIR022W 504 nt9.22□□□□□ -0.93
LSM6Q06406 GUT2YIL155C 1950 nt9.22□□□□□ -0.93
LSM6Q06406 YDL221WYDL221W 552 nt9.2□□□□□ -0.94
LSM6Q06406 INM2YDR287W 879 nt9.19□□□□□ -0.94
LSM6Q06406 FPS1YLL043W 2010 nt9.17□□□□□ -0.94
LSM6Q06406 YDR095CYDR095C 411 nt9.16□□□□□ -0.94
LSM6Q06406 GAR1YHR089C 618 nt9.1□□□□□ -0.95
LSM6Q06406 RPP2BYDR382W 333 nt9.07□□□□□ -0.96
LSM6Q06406 YJR120WYJR120W 351 nt9.06□□□□□ -0.96
LSM6Q06406 SCC4YER147C 1875 nt9.06□□□□□ -0.96
LSM6Q06406 CAC2YML102W 1407 nt9.03□□□□□ -0.96
LSM6Q06406 SCR1SCR1 522 nt9.02□□□□□ -0.97
LSM6Q06406 PIB2YGL023C 1908 nt9.01□□□□□ -0.97
LSM6Q06406 PTP1YDL230W 1008 nt8.98□□□□□ -0.97
LSM6Q06406 RPP2AYOL039W 321 nt8.98□□□□□ -0.97
LSM6Q06406 YBL100CYBL100C 315 nt8.97□□□□□ -0.97
LSM6Q06406 RTF1YGL244W 1677 nt8.95□□□□□ -0.98
LSM6Q06406 YSC84YHR016C 1407 nt8.92□□□□□ -0.98
LSM6Q06406 RDN37-1RDN37-1 5354 nt8.92□□□□□ -0.98
LSM6Q06406 RDN37-2RDN37-2 5354 nt8.92□□□□□ -0.98
LSM6Q06406 RRN5YLR141W 1092 nt8.91□□□□□ -0.98
LSM6Q06406 IRC15YPL017C 1500 nt8.9□□□□□ -0.98
LSM6Q06406 ALF1YNL148C 765 nt8.88□□□□□ -0.99
LSM6Q06406 GIS3YLR094C 1509 nt8.87□□□□□ -0.99
LSM6Q06406 SSA1YAL005C 1929 nt8.86□□□□□ -0.99
LSM6Q06406 BOR1YNL275W 1731 nt8.85□□□□□ -0.99
LSM6Q06406 TIR1YER011W 765 nt8.85□□□□□ -0.99
LSM6Q06406 BOP3YNL042W 1191 nt8.85□□□□□ -0.99
LSM6Q06406 YHL050CYHL050C 2094 nt8.84□□□□□ -0.99
LSM6Q06406 FUN26YAL022C 1554 nt8.83□□□□□ -1
LSM6Q06406 UME6YDR207C 2511 nt8.83□□□□□ -1
Retrieved 100 of 7,029 protein–RNA pairs in 43.2 ms