RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 CFAP44Q96MT7 982 aa9.41□□□□□ -0.9
PTPN4-210ENST00000485247 LHX6Q9UPM6 363 aa9.41□□□□□ -0.9
PTPN4-210ENST00000485247 OXER1Q8TDS5 423 aa9.4□□□□□ -0.9
PTPN4-210ENST00000485247 ABCA8O94911 1581 aa9.4□□□□□ -0.9
PTPN4-210ENST00000485247 FRMPD1Q5SYB0 1578 aa9.4□□□□□ -0.9
PTPN4-210ENST00000485247 YEATS2Q9ULM3 1422 aa9.39□□□□□ -0.91
PTPN4-210ENST00000485247 UPF1Q92900 1129 aaKnown RBP eCLIP9.39□□□□□ -0.91
PTPN4-210ENST00000485247 NEO1Q92859 1461 aa9.39□□□□□ -0.91
PTPN4-210ENST00000485247 POGZQ7Z3K3 1410 aa9.39□□□□□ -0.91
PTPN4-210ENST00000485247 ZNF687Q8N1G0 1237 aa9.38□□□□□ -0.91
PTPN4-210ENST00000485247 ARHGEF40Q8TER5 1519 aa9.37□□□□□ -0.91
PTPN4-210ENST00000485247 RAPGEF2Q9Y4G8 1499 aa9.37□□□□□ -0.91
PTPN4-210ENST00000485247 ABCA9Q8IUA7 1624 aa9.37□□□□□ -0.91
PTPN4-210ENST00000485247 FANCAO15360 1455 aa9.36□□□□□ -0.91
PTPN4-210ENST00000485247 CEBPAP49715 358 aaPredicted RBP9.36□□□□□ -0.91
PTPN4-210ENST00000485247 EMILIN3Q9NT22 766 aa9.36□□□□□ -0.91
PTPN4-210ENST00000485247 ATP10BO94823 1461 aa9.35□□□□□ -0.91
PTPN4-210ENST00000485247 STRCQ7RTU9 1775 aa9.35□□□□□ -0.91
PTPN4-210ENST00000485247 GOLGA3Q08378 1498 aa9.34□□□□□ -0.91
PTPN4-210ENST00000485247 AKNAQ7Z591 1439 aa9.34□□□□□ -0.91
PTPN4-210ENST00000485247 SPNS2Q8IVW8 549 aa9.34□□□□□ -0.91
PTPN4-210ENST00000485247 DENND4BO75064 1496 aaPredicted RBP9.34□□□□□ -0.91
PTPN4-210ENST00000485247 SIGLEC1Q9BZZ2 1709 aa9.34□□□□□ -0.92
PTPN4-210ENST00000485247 TBC1D12O60347 775 aa9.33□□□□□ -0.92
PTPN4-210ENST00000485247 POTEEQ6S8J3 1075 aa9.33□□□□□ -0.92
PTPN4-210ENST00000485247 TTC37Q6PGP7 1564 aa9.33□□□□□ -0.92
PTPN4-210ENST00000485247 PREX1Q8TCU6 1659 aa9.32□□□□□ -0.92
PTPN4-210ENST00000485247 FER1L4A9Z1Z3 1794 aa9.32□□□□□ -0.92
PTPN4-210ENST00000485247 P3H3Q8IVL6 736 aa9.32□□□□□ -0.92
PTPN4-210ENST00000485247 FAM9AQ8IZU1 332 aaPredicted RBP9.32□□□□□ -0.92
PTPN4-210ENST00000485247 LTBP4Q8N2S1 1624 aa9.31□□□□□ -0.92
PTPN4-210ENST00000485247 PTPRTO14522 1441 aa9.31□□□□□ -0.92
PTPN4-210ENST00000485247 FHOD3Q2V2M9 1422 aa9.31□□□□□ -0.92
PTPN4-210ENST00000485247 UBAP1LF5GYI3 381 aa9.3□□□□□ -0.92
PTPN4-210ENST00000485247 CAMK2BQ13554 666 aa9.3□□□□□ -0.92
PTPN4-210ENST00000485247 RICTORQ6R327 1708 aa9.3□□□□□ -0.92
PTPN4-210ENST00000485247 ZFYVE16Q7Z3T8 1539 aa9.3□□□□□ -0.92
PTPN4-210ENST00000485247 UHRF1BP1Q6BDS2 1440 aa9.3□□□□□ -0.92
PTPN4-210ENST00000485247 IQSEC2Q5JU85 1478 aa9.28□□□□□ -0.92
PTPN4-210ENST00000485247 EFCAB5A4FU69 1503 aa9.28□□□□□ -0.92
PTPN4-210ENST00000485247 MMRN1Q13201 1228 aa9.28□□□□□ -0.92
PTPN4-210ENST00000485247 AXIN2Q9Y2T1 843 aa9.28□□□□□ -0.92
PTPN4-210ENST00000485247 CTTNBP2Q8WZ74 1663 aa9.27□□□□□ -0.93
PTPN4-210ENST00000485247 PSDA5PKW4 1024 aaPredicted RBP9.27□□□□□ -0.93
PTPN4-210ENST00000485247 EVI5O60447 810 aa9.27□□□□□ -0.93
PTPN4-210ENST00000485247 ANO8Q9HCE9 1232 aaPredicted RBP9.27□□□□□ -0.93
PTPN4-210ENST00000485247 ZMYM4Q5VZL5 1548 aa9.26□□□□□ -0.93
PTPN4-210ENST00000485247 ARHGEF12Q9NZN5 1544 aa9.26□□□□□ -0.93
PTPN4-210ENST00000485247 MAP3K9P80192 1104 aa9.25□□□□□ -0.93
PTPN4-210ENST00000485247 TSHZ2Q9NRE2 1034 aa9.25□□□□□ -0.93
PTPN4-210ENST00000485247 MAGI2Q86UL8 1455 aa9.25□□□□□ -0.93
PTPN4-210ENST00000485247 HECW1Q76N89 1606 aa9.24□□□□□ -0.93
PTPN4-210ENST00000485247 DPYSL4O14531 572 aa9.24□□□□□ -0.93
PTPN4-210ENST00000485247 PBX2P40425 430 aa9.24□□□□□ -0.93
PTPN4-210ENST00000485247 LSM11P83369 360 aaKnown RBP eCLIP9.24□□□□□ -0.93
PTPN4-210ENST00000485247 PPP4R3BQ5MIZ7 849 aa9.24□□□□□ -0.93
PTPN4-210ENST00000485247 MED1Q15648 1581 aaPredicted RBP9.24□□□□□ -0.93
PTPN4-210ENST00000485247 PLEKHD1A6NEE1 506 aa9.23□□□□□ -0.93
PTPN4-210ENST00000485247 HSPA1LP34931 641 aa9.23□□□□□ -0.93
PTPN4-210ENST00000485247 ZNF454Q8N9F8 522 aa9.23□□□□□ -0.93
PTPN4-210ENST00000485247 ZNF335Q9H4Z2 1342 aaPredicted RBP9.23□□□□□ -0.93
PTPN4-210ENST00000485247 C9orf84Q5VXU9 1444 aa9.22□□□□□ -0.93
PTPN4-210ENST00000485247 ATP10AO60312 1499 aa9.22□□□□□ -0.93
PTPN4-210ENST00000485247 CFAP74Q9C0B2 1584 aa9.22□□□□□ -0.93
PTPN4-210ENST00000485247 FOSBP53539 338 aa9.22□□□□□ -0.93
PTPN4-210ENST00000485247 SETD1BQ9UPS6 1966 aaKnown RBP9.22□□□□□ -0.93
PTPN4-210ENST00000485247 SCAPERQ9BY12 1400 aa9.22□□□□□ -0.93
PTPN4-210ENST00000485247 ARHGAP33O14559 1287 aa9.21□□□□□ -0.94
PTPN4-210ENST00000485247 PSEN2P49810 448 aa9.21□□□□□ -0.94
PTPN4-210ENST00000485247 PIP4K2BP78356 416 aa9.21□□□□□ -0.94
PTPN4-210ENST00000485247 ANKRD13DQ6ZTN6 518 aa9.21□□□□□ -0.94
PTPN4-210ENST00000485247 NCOA1Q15788 1441 aa9.21□□□□□ -0.94
PTPN4-210ENST00000485247 RAPGEF6Q8TEU7 1601 aa9.2□□□□□ -0.94
PTPN4-210ENST00000485247 DMRTA1Q5VZB9 504 aa9.2□□□□□ -0.94
PTPN4-210ENST00000485247 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.2□□□□□ -0.94
PTPN4-210ENST00000485247 ESF1Q9H501 851 aaKnown RBP9.19□□□□□ -0.94
PTPN4-210ENST00000485247 NUP153P49790 1475 aaKnown RBP9.19□□□□□ -0.94
PTPN4-210ENST00000485247 E2F4Q16254 413 aa9.18□□□□□ -0.94
PTPN4-210ENST00000485247 MYT1LQ9UL68 1186 aa9.18□□□□□ -0.94
PTPN4-210ENST00000485247 TRAPPC8Q9Y2L5 1435 aa9.18□□□□□ -0.94
PTPN4-210ENST00000485247 KCNK17Q96T54 332 aa9.17□□□□□ -0.94
PTPN4-210ENST00000485247 BCL2L12Q9HB09 334 aa9.17□□□□□ -0.94
PTPN4-210ENST00000485247 PCDHGA10Q9Y5H3 936 aa9.17□□□□□ -0.94
PTPN4-210ENST00000485247 C3P01024 1663 aa9.16□□□□□ -0.94
PTPN4-210ENST00000485247 CAMSAP1Q5T5Y3 1602 aa9.16□□□□□ -0.94
PTPN4-210ENST00000485247 RANGAP1P46060 587 aaPredicted RBP9.16□□□□□ -0.94
PTPN4-210ENST00000485247 PLCB2Q00722 1185 aa9.16□□□□□ -0.94
PTPN4-210ENST00000485247 ADAM33Q9BZ11 813 aa9.16□□□□□ -0.94
PTPN4-210ENST00000485247 PDIA6Q15084 440 aa9.15□□□□□ -0.94
PTPN4-210ENST00000485247 AFAP1Q8N556 730 aa9.15□□□□□ -0.94
PTPN4-210ENST00000485247 ZDHHC16Q969W1 377 aa9.15□□□□□ -0.94
PTPN4-210ENST00000485247 WDR70Q9NW82 654 aa9.15□□□□□ -0.94
PTPN4-210ENST00000485247 PLCH2O75038 1416 aa9.14□□□□□ -0.95
PTPN4-210ENST00000485247 TOM1O60784 492 aa9.14□□□□□ -0.95
PTPN4-210ENST00000485247 ADGRD1Q6QNK2 874 aa9.14□□□□□ -0.95
PTPN4-210ENST00000485247 ARIH1Q9Y4X5 557 aaPredicted RBP9.14□□□□□ -0.95
PTPN4-210ENST00000485247 PRXQ9BXM0 1461 aa9.14□□□□□ -0.95
PTPN4-210ENST00000485247 EFCAB2Q5VUJ9 269 aa9.13□□□□□ -0.95
PTPN4-210ENST00000485247 SAMD9Q5K651 1589 aa9.12□□□□□ -0.95
PTPN4-210ENST00000485247 PHF14O94880 888 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms