RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 PDE4AP27815 886 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 GRIN2BQ13224 1484 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 LRCH2Q5VUJ6 765 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 WASHC2AQ641Q2 1341 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 ERICH4A6NGS2 130 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 MRS2Q9HD23 443 aa8.3□□□□□ -1.08
PDGFRA-201ENST00000257290 HMGB1P1B2RPK0 211 aaPredicted RBP8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 SLC26A8Q96RN1 970 aa8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 CT47A1Q5JQC4 288 aaPredicted RBP8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 PES1O00541 588 aaKnown RBP8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 CERS3Q8IU89 383 aa8.29□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC97Q96F63 343 aaPredicted RBP8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 HSP90AB1P08238 724 aaKnown RBP8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 MS4A1P11836 297 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 SASS6Q6UVJ0 657 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 DMTNQ08495 405 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 ZSCAN30Q86W11 494 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC39Q9UFE4 941 aa8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 POLA1P09884 1462 aaPredicted RBP8.28□□□□□ -1.08
PDGFRA-201ENST00000257290 CPSF2Q9P2I0 782 aaKnown RBP8.27□□□□□ -1.08
PDGFRA-201ENST00000257290 STAG3Q9UJ98 1225 aa8.27□□□□□ -1.08
PDGFRA-201ENST00000257290 PRXQ9BXM0 1461 aa8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 CHGAP10645 457 aaKnown RBP8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 LEKR1Q6ZMV7 388 aa8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 EFCAB5A4FU69 1503 aa8.27□□□□□ -1.09
PDGFRA-201ENST00000257290 AK7Q96M32 723 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 CCDC34Q96HJ3 373 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 MYCNP04198 464 aaPredicted RBP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 TMC1Q8TDI8 760 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 BIVM-ERCC5R4GMW8 1640 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 AQRO60306 1485 aaKnown RBP eCLIP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 TRERF1Q96PN7 1200 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 CWC22Q9HCG8 908 aaKnown RBP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 FRAT2O75474 233 aaPredicted RBP8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 TPM3P06753 285 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 JPH4Q96JJ6 628 aa8.26□□□□□ -1.09
PDGFRA-201ENST00000257290 ABCA10Q8WWZ4 1543 aa8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 VGFO15240 615 aaPredicted RBP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 EIF4G2P78344 907 aaKnown RBP eCLIP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 DRC7Q8IY82 874 aa8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 ARGLU1Q9NWB6 273 aaPredicted RBP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 SYAP1Q96A49 352 aaPredicted RBP8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 RASSF4Q9H2L5 321 aa8.25□□□□□ -1.09
PDGFRA-201ENST00000257290 GOLGA6L19H0YKK7 550 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 SLC4A3P48751 1232 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 ZRSR2Q15696 482 aaKnown RBP8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 EFCC1Q9HA90 598 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 TOMM22Q9NS69 142 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 NASPP49321 788 aaPredicted RBP8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 ARMCX6Q7L4S7 300 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 PIK3R5Q8WYR1 880 aa8.24□□□□□ -1.09
PDGFRA-201ENST00000257290 CASKIN1Q8WXD9 1431 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 KANK1Q14678 1352 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 TPM4P67936 248 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 SMC4Q9NTJ3 1288 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 ZNF853P0CG23 659 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 ANKRD30AQ9BXX3 1397 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 HDAC1Q13547 482 aaPredicted RBP8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 DYDC1Q8WWB3 177 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 GRPEL1Q9HAV7 217 aa8.23□□□□□ -1.09
PDGFRA-201ENST00000257290 CUL7Q14999 1698 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 TERF1P54274 439 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 RGS22Q8NE09 1264 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 FYCO1Q9BQS8 1478 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 HSPA5P11021 654 aaKnown RBP8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 RAB3GAP2Q9H2M9 1393 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 GOLGA6L10A6NI86 522 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 NBPF6Q5VWK0 638 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 NBPF5PQ86XG9 351 aaPredicted RBP8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 NBPF4Q96M43 638 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 KDM2AQ9Y2K7 1162 aa8.22□□□□□ -1.09
PDGFRA-201ENST00000257290 GOLGA6L4A6NEF3 574 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 SPRYD3Q8NCJ5 442 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 PUS7Q96PZ0 661 aaKnown RBP8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 PTPRGP23470 1445 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 ANKRD20A12PQ8NF67 263 aa8.21□□□□□ -1.09
PDGFRA-201ENST00000257290 RRAGDQ9NQL2 400 aaPredicted RBP8.21□□□□□ -1.1
PDGFRA-201ENST00000257290 TTC36A6NLP5 189 aa8.21□□□□□ -1.1
PDGFRA-201ENST00000257290 ZNF830Q96NB3 372 aaPredicted RBP8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 AP1ARQ63HQ0 302 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 SATB1Q01826 763 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 HSP90AB4PQ58FF6 505 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 EFCAB2Q5VUJ9 269 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 ARAP1Q96P48 1450 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 RPAINQ86UA6 219 aa8.2□□□□□ -1.1
PDGFRA-201ENST00000257290 NUCKS1Q9H1E3 243 aaKnown RBP8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 MFAP1P55081 439 aaKnown RBP8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 LRRC9Q6ZRR7 1453 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 TPM1P09493 284 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 ACBD3Q9H3P7 528 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 CEP83Q9Y592 693 aa8.19□□□□□ -1.1
PDGFRA-201ENST00000257290 WDR78Q5VTH9 848 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 CCDC191Q8NCU4 936 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 DNAAF4Q8WXU2 420 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 ATP6V1AP38606 617 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 TTC31Q49AM3 519 aaPredicted RBP8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 LMOD2Q6P5Q4 547 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 SIN3AQ96ST3 1273 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 SNAPC4Q5SXM2 1469 aa8.18□□□□□ -1.1
PDGFRA-201ENST00000257290 FAM107BQ9H098 131 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms