RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W DIT2P21595 489 aa4.85□□□□□ -1.63
LCB5YLR260W PCS60P38137 543 aaKnown RBP RIP-Chip data4.84□□□□□ -1.64not detected
LCB5YLR260W ILV3P39522 585 aaKnown RBP4.84□□□□□ -1.64
LCB5YLR260W GLC3P32775 704 aa4.83□□□□□ -1.64
LCB5YLR260W RAD54P32863 898 aa4.83□□□□□ -1.64
LCB5YLR260W EAP1P36041 632 aaKnown RBP4.83□□□□□ -1.64
LCB5YLR260W GEF1P37020 779 aa4.83□□□□□ -1.64
LCB5YLR260W BRL1P38770 471 aa4.83□□□□□ -1.64
LCB5YLR260W HGH1P48362 394 aaKnown RBP4.83□□□□□ -1.64
LCB5YLR260W RIA1P53893 1110 aa4.83□□□□□ -1.64
LCB5YLR260W TY3B-IQ7LHG5 1498 aaKnown RBP4.83□□□□□ -1.64
LCB5YLR260W RAV1P47104 1357 aa4.83□□□□□ -1.64
LCB5YLR260W AI4P03878 556 aa4.82□□□□□ -1.64
LCB5YLR260W YEL023CP39992 682 aa4.82□□□□□ -1.64
LCB5YLR260W FKH1P40466 484 aa4.82□□□□□ -1.64
LCB5YLR260W YJL171CP46992 396 aa4.82□□□□□ -1.64
LCB5YLR260W RAD9P14737 1309 aa4.82□□□□□ -1.64
LCB5YLR260W TRP5P00931 707 aaKnown RBP4.82□□□□□ -1.64
LCB5YLR260W MPH3P0CE00 602 aa4.82□□□□□ -1.64
LCB5YLR260W SSA1P10591 642 aaKnown RBP4.82□□□□□ -1.64
LCB5YLR260W KIC1P38692 1080 aa4.82□□□□□ -1.64
LCB5YLR260W TIF11P38912 153 aaKnown RBP4.81□□□□□ -1.64
LCB5YLR260W YNR029CP53729 429 aaKnown RBP4.81□□□□□ -1.64
LCB5YLR260W APP1P53933 587 aa4.81□□□□□ -1.64
LCB5YLR260W AIM7Q12156 149 aa4.81□□□□□ -1.64
LCB5YLR260W ULI1P43604 169 aa4.8□□□□□ -1.64
LCB5YLR260W CAB1Q04430 367 aa4.8□□□□□ -1.64
LCB5YLR260W RRP5Q05022 1729 aaKnown RBP4.79□□□□□ -1.64
LCB5YLR260W PTC4P38089 393 aa4.79□□□□□ -1.64
LCB5YLR260W MRX12P47084 519 aa4.79□□□□□ -1.64
LCB5YLR260W DAN4P47179 1161 aa4.78□□□□□ -1.64
LCB5YLR260W IOC2Q12072 812 aa4.78□□□□□ -1.64
LCB5YLR260W TY4B-HP0C2J7 1802 aa4.78□□□□□ -1.64
LCB5YLR260W TY4B-JP47024 1803 aa4.78□□□□□ -1.64
LCB5YLR260W RTC1Q08281 1341 aa4.78□□□□□ -1.64
LCB5YLR260W GLN1P32288 370 aaKnown RBP4.77□□□□□ -1.65
LCB5YLR260W ORC6P38826 435 aa4.77□□□□□ -1.65
LCB5YLR260W JIP4Q03361 876 aa4.77□□□□□ -1.65
LCB5YLR260W SUB2Q07478 446 aaKnown RBP4.77□□□□□ -1.65
LCB5YLR260W SLI15P38283 698 aa4.77□□□□□ -1.65
LCB5YLR260W PSE1P32337 1089 aaKnown RBP4.76□□□□□ -1.65
LCB5YLR260W GUA1P38625 525 aaKnown RBP4.76□□□□□ -1.65
LCB5YLR260W ALD4P46367 519 aaKnown RBP4.76□□□□□ -1.65
LCB5YLR260W ATG36P46983 293 aa4.76□□□□□ -1.65
LCB5YLR260W LDB19Q12502 818 aa4.76□□□□□ -1.65
LCB5YLR260W YRF1-2P40105 1681 aa4.76□□□□□ -1.65
LCB5YLR260W ATF2P53296 535 aa4.76□□□□□ -1.65
LCB5YLR260W PAM1P37304 830 aaKnown RBP4.75□□□□□ -1.65
LCB5YLR260W NUG1P40010 520 aaKnown RBP4.75□□□□□ -1.65
LCB5YLR260W BRN1P38170 754 aa4.74□□□□□ -1.65
LCB5YLR260W SWE1P32944 819 aa4.74□□□□□ -1.65
LCB5YLR260W YNL035CP53962 389 aaKnown RBP4.74□□□□□ -1.65
LCB5YLR260W LAM6Q08001 693 aa4.73□□□□□ -1.65
LCB5YLR260W GAP1P19145 602 aaPredicted RBP4.73□□□□□ -1.65
LCB5YLR260W PAF1P38351 445 aa4.73□□□□□ -1.65
LCB5YLR260W SPC42P36094 363 aa4.72□□□□□ -1.65
LCB5YLR260W ENT1Q12518 454 aa4.72□□□□□ -1.65
LCB5YLR260W RGR1P19263 1082 aa4.71□□□□□ -1.65
LCB5YLR260W RTG1P32607 177 aa4.71□□□□□ -1.65
LCB5YLR260W FAR11P53917 953 aa4.71□□□□□ -1.65
LCB5YLR260W CDC73Q06697 393 aa4.71□□□□□ -1.65
LCB5YLR260W BMT6Q12291 365 aa4.71□□□□□ -1.65
LCB5YLR260W YIL177CP40434 1758 aa4.71□□□□□ -1.66
LCB5YLR260W YJL225CP40889 1758 aa4.71□□□□□ -1.66
LCB5YLR260W SLD2P34252 453 aa4.71□□□□□ -1.66
LCB5YLR260W MVP1P40959 511 aaKnown RBP4.71□□□□□ -1.66
LCB5YLR260W MID1P41821 548 aa4.71□□□□□ -1.66
LCB5YLR260W PML39Q03760 334 aa4.71□□□□□ -1.66
LCB5YLR260W ENV9Q08651 330 aa4.71□□□□□ -1.66
LCB5YLR260W SEC61P32915 480 aa4.7□□□□□ -1.66
LCB5YLR260W URB1P34241 1764 aaKnown RBP4.7□□□□□ -1.66
LCB5YLR260W FKS3Q04952 1785 aa4.7□□□□□ -1.66
LCB5YLR260W PPH3P32345 308 aa4.69□□□□□ -1.66
LCB5YLR260W RRN6P32786 894 aa4.69□□□□□ -1.66
LCB5YLR260W TAF5P38129 798 aa4.69□□□□□ -1.66
LCB5YLR260W CSC1Q06538 782 aa4.69□□□□□ -1.66
LCB5YLR260W RPP1BP10622 106 aaKnown RBP4.69□□□□□ -1.66
LCB5YLR260W RTS3P53289 263 aa4.69□□□□□ -1.66
LCB5YLR260W RCM1P53972 490 aa4.69□□□□□ -1.66
LCB5YLR260W TAF8Q03750 510 aa4.69□□□□□ -1.66
LCB5YLR260W TEA1P47988 759 aa4.68□□□□□ -1.66
LCB5YLR260W DOS2P54858 310 aa4.68□□□□□ -1.66
LCB5YLR260W CPS1P27614 576 aa4.68□□□□□ -1.66
LCB5YLR260W YJR008WP47085 338 aa4.68□□□□□ -1.66
LCB5YLR260W SUB1P54000 292 aaKnown RBP4.68□□□□□ -1.66
LCB5YLR260W TFB3Q03290 321 aa4.68□□□□□ -1.66
LCB5YLR260W MPC54Q08550 464 aa4.68□□□□□ -1.66
LCB5YLR260W YRF1-3P0CX14 1859 aa4.67□□□□□ -1.66
LCB5YLR260W YRF1-7P0CX15 1859 aa4.67□□□□□ -1.66
LCB5YLR260W YRF1-6P53819 1859 aa4.67□□□□□ -1.66
LCB5YLR260W CLB5P30283 435 aa4.67□□□□□ -1.66
LCB5YLR260W HPC2Q01448 625 aa4.67□□□□□ -1.66
LCB5YLR260W YMR074CQ04773 145 aa4.67□□□□□ -1.66
LCB5YLR260W DPL1Q05567 589 aa4.67□□□□□ -1.66
LCB5YLR260W ASF1P32447 279 aa4.66□□□□□ -1.66
LCB5YLR260W VPS72Q03388 795 aa4.66□□□□□ -1.66
LCB5YLR260W TFB4Q12004 338 aa4.66□□□□□ -1.66
LCB5YLR260W YPR109WQ06104 294 aa4.66□□□□□ -1.66
LCB5YLR260W IMH1Q06704 911 aaKnown RBP4.66□□□□□ -1.66
LCB5YLR260W NCR1Q12200 1170 aa4.66□□□□□ -1.66
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms