RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 EHBP1L1Q8N3D4 1523 aa12.57□□□□□ -0.4
CLK1-215ENST00000621181 A2ML1A8K2U0 1454 aa12.57□□□□□ -0.4
CLK1-215ENST00000621181 MBD5Q9P267 1494 aa12.57□□□□□ -0.4
CLK1-215ENST00000621181 RTEL1-TNFRSF6BF6WH68 1400 aa12.56□□□□□ -0.4
CLK1-215ENST00000621181 DHX29Q7Z478 1369 aaKnown RBP12.55□□□□□ -0.4
CLK1-215ENST00000621181 KIF3BO15066 747 aa12.55□□□□□ -0.4
CLK1-215ENST00000621181 DNMT1P26358 1616 aaKnown RBP12.55□□□□□ -0.4
CLK1-215ENST00000621181 SCAF1Q9H7N4 1312 aaKnown RBP12.55□□□□□ -0.4
CLK1-215ENST00000621181 CEP162Q5TB80 1403 aa12.55□□□□□ -0.4
CLK1-215ENST00000621181 TNRQ92752 1358 aa12.54□□□□□ -0.4
CLK1-215ENST00000621181 FBXO31Q5XUX0 539 aaPredicted RBP12.53□□□□□ -0.4
CLK1-215ENST00000621181 WASHC2CQ9Y4E1 1318 aa12.53□□□□□ -0.4
CLK1-215ENST00000621181 CCDC141Q6ZP82 1450 aa12.52□□□□□ -0.4
CLK1-215ENST00000621181 KDM5DQ9BY66 1539 aa12.52□□□□□ -0.4
CLK1-215ENST00000621181 PIP4K2BP78356 416 aa12.52□□□□□ -0.41
CLK1-215ENST00000621181 PZPP20742 1482 aa12.51□□□□□ -0.41
CLK1-215ENST00000621181 RSPH4AQ5TD94 716 aa12.51□□□□□ -0.41
CLK1-215ENST00000621181 POLR1AO95602 1720 aaPredicted RBP12.51□□□□□ -0.41
CLK1-215ENST00000621181 CAMSAP2Q08AD1 1489 aa12.51□□□□□ -0.41
CLK1-215ENST00000621181 TOM1O60784 492 aa12.51□□□□□ -0.41
CLK1-215ENST00000621181 CPS1P31327 1500 aa12.5□□□□□ -0.41
CLK1-215ENST00000621181 FAM135AQ9P2D6 1515 aa12.5□□□□□ -0.41
CLK1-215ENST00000621181 ANKLE2Q86XL3 938 aa12.5□□□□□ -0.41
CLK1-215ENST00000621181 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLK1-215ENST00000621181 THEMISQ8N1K5 641 aaPredicted RBP12.49□□□□□ -0.41
CLK1-215ENST00000621181 NCOA2Q15596 1464 aa12.49□□□□□ -0.41
CLK1-215ENST00000621181 NEURL4Q96JN8 1562 aa12.49□□□□□ -0.41
CLK1-215ENST00000621181 TSPY4P0CV99 314 aa12.48□□□□□ -0.41
CLK1-215ENST00000621181 TSPY10P0CW01 314 aa12.48□□□□□ -0.41
CLK1-215ENST00000621181 SHANK2Q9UPX8 1470 aa12.48□□□□□ -0.41
CLK1-215ENST00000621181 HSPA1LP34931 641 aa12.48□□□□□ -0.41
CLK1-215ENST00000621181 MIA2Q96PC5 1412 aa12.48□□□□□ -0.41
CLK1-215ENST00000621181 NLRP1Q9C000 1473 aa12.48□□□□□ -0.41
CLK1-215ENST00000621181 UGGT1Q9NYU2 1555 aa12.47□□□□□ -0.41
CLK1-215ENST00000621181 NPHP4O75161 1426 aaPredicted RBP12.45□□□□□ -0.42
CLK1-215ENST00000621181 ARHGEF5Q12774 1597 aa12.44□□□□□ -0.42
CLK1-215ENST00000621181 MED1Q15648 1581 aaPredicted RBP12.44□□□□□ -0.42
CLK1-215ENST00000621181 DEPDC5O75140 1603 aa12.43□□□□□ -0.42
CLK1-215ENST00000621181 VWDEQ8N2E2 1590 aa12.43□□□□□ -0.42
CLK1-215ENST00000621181 MED14O60244 1454 aa12.42□□□□□ -0.42
CLK1-215ENST00000621181 IQGAP1P46940 1657 aa12.42□□□□□ -0.42
CLK1-215ENST00000621181 RNF17Q9BXT8 1623 aaKnown RBP12.4□□□□□ -0.42
CLK1-215ENST00000621181 ZC3H13Q5T200 1668 aaKnown RBP12.4□□□□□ -0.42
CLK1-215ENST00000621181 ABCC3O15438 1527 aa12.4□□□□□ -0.42
CLK1-215ENST00000621181 LRRC9Q6ZRR7 1453 aa12.39□□□□□ -0.43
CLK1-215ENST00000621181 ERVK-7P63135 1459 aa12.38□□□□□ -0.43
CLK1-215ENST00000621181 CFAP65Q6ZU64 1925 aaKnown RBP12.38□□□□□ -0.43
CLK1-215ENST00000621181 MAST1Q9Y2H9 1570 aa12.37□□□□□ -0.43
CLK1-215ENST00000621181 EIF2AK4Q9P2K8 1649 aaKnown RBP12.37□□□□□ -0.43
CLK1-215ENST00000621181 ALKQ9UM73 1620 aa12.37□□□□□ -0.43
CLK1-215ENST00000621181 VPS8Q8N3P4 1428 aa12.36□□□□□ -0.43
CLK1-215ENST00000621181 LRRC7Q96NW7 1537 aa12.36□□□□□ -0.43
CLK1-215ENST00000621181 SYNMO15061 1565 aa12.36□□□□□ -0.43
CLK1-215ENST00000621181 STRCP1A6NGW2 1772 aa12.36□□□□□ -0.43
CLK1-215ENST00000621181 CEP152O94986 1710 aa12.35□□□□□ -0.43
CLK1-215ENST00000621181 SCAF11Q99590 1463 aaKnown RBP12.35□□□□□ -0.43
CLK1-215ENST00000621181 MYOM3Q5VTT5 1437 aa12.35□□□□□ -0.43
CLK1-215ENST00000621181 MROH1Q8NDA8 1641 aa12.34□□□□□ -0.43
CLK1-215ENST00000621181 UBR1Q8IWV7 1749 aa12.34□□□□□ -0.43
CLK1-215ENST00000621181 KANK4Q5T7N3 995 aaPredicted RBP12.34□□□□□ -0.43
CLK1-215ENST00000621181 DUOX2Q9NRD8 1548 aa12.34□□□□□ -0.43
CLK1-215ENST00000621181 TXNDC2Q86VQ3 553 aa12.33□□□□□ -0.44
CLK1-215ENST00000621181 EID1Q9Y6B2 187 aa12.32□□□□□ -0.44
CLK1-215ENST00000621181 KIF15Q9NS87 1388 aa12.32□□□□□ -0.44
CLK1-215ENST00000621181 LTKP29376 864 aa12.32□□□□□ -0.44
CLK1-215ENST00000621181 POTEDQ86YR6 584 aa12.32□□□□□ -0.44
CLK1-215ENST00000621181 RRP7BPQ9NSQ0 103 aa12.31□□□□□ -0.44
CLK1-215ENST00000621181 STAG3Q9UJ98 1225 aa12.31□□□□□ -0.44
CLK1-215ENST00000621181 KCNA4P22459 653 aa12.3□□□□□ -0.44
CLK1-215ENST00000621181 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.3□□□□□ -0.442e-8■■□□□ 12.7
CLK1-215ENST00000621181 SLIT1O75093 1534 aa12.3□□□□□ -0.44
CLK1-215ENST00000621181 PRDM15P57071 1507 aaPredicted RBP12.3□□□□□ -0.44
CLK1-215ENST00000621181 MAP3K1Q13233 1512 aa12.3□□□□□ -0.44
CLK1-215ENST00000621181 LOC105371045A0A1W2PR82 267 aa12.3□□□□□ -0.44
CLK1-215ENST00000621181 ARHGAP31Q2M1Z3 1444 aa12.3□□□□□ -0.44
CLK1-215ENST00000621181 ERBINQ96RT1 1412 aa12.3□□□□□ -0.44
CLK1-215ENST00000621181 ARHGAP23Q9P227 1491 aa12.3□□□□□ -0.44
CLK1-215ENST00000621181 KANK1Q14678 1352 aa12.28□□□□□ -0.44
CLK1-215ENST00000621181 TMEM2Q9UHN6 1383 aa12.27□□□□□ -0.45
CLK1-215ENST00000621181 ABCC5O15440 1437 aa12.26□□□□□ -0.45
CLK1-215ENST00000621181 CROCC2H7BZ55 1655 aa12.26□□□□□ -0.45
CLK1-215ENST00000621181 PIK3C2BO00750 1634 aa12.26□□□□□ -0.45
CLK1-215ENST00000621181 APLP2Q06481 763 aa12.26□□□□□ -0.45
CLK1-215ENST00000621181 PTPN23Q9H3S7 1636 aa12.25□□□□□ -0.45
CLK1-215ENST00000621181 XIRP1Q702N8 1843 aaKnown RBP12.25□□□□□ -0.45
CLK1-215ENST00000621181 EFCAB6Q5THR3 1501 aa12.24□□□□□ -0.45
CLK1-215ENST00000621181 DAPK1P53355 1430 aa12.24□□□□□ -0.45
CLK1-215ENST00000621181 TMEM94Q12767 1356 aa12.24□□□□□ -0.45
CLK1-215ENST00000621181 IDI1Q13907 227 aa12.23□□□□□ -0.45
CLK1-215ENST00000621181 CHIC2Q9UKJ5 165 aa12.23□□□□□ -0.45
CLK1-215ENST00000621181 FAM135BQ49AJ0 1406 aa12.23□□□□□ -0.45
CLK1-215ENST00000621181 SLC26A8Q96RN1 970 aa12.23□□□□□ -0.45
CLK1-215ENST00000621181 RGS17Q9UGC6 210 aaPredicted RBP12.23□□□□□ -0.45
CLK1-215ENST00000621181 ANKRD30AQ9BXX3 1397 aa12.22□□□□□ -0.45
CLK1-215ENST00000621181 KCNA6P17658 529 aa12.22□□□□□ -0.45
CLK1-215ENST00000621181 KDM5AP29375 1690 aaKnown RBP12.22□□□□□ -0.45
CLK1-215ENST00000621181 PROSER2Q86WR7 435 aaPredicted RBP12.21□□□□□ -0.45
CLK1-215ENST00000621181 CNKSR2Q8WXI2 1034 aa12.21□□□□□ -0.45
CLK1-215ENST00000621181 RBM33Q96EV2 1170 aaKnown RBP12.21□□□□□ -0.45
CLK1-215ENST00000621181 BCANQ96GW7 911 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms