RNA–Protein interactions for RNA: ENST00000598359.5

SCAF1-203, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-203ENST00000598359 PPP6R1Q9UPN7 881 aa21.48■■□□□ 1.03
SCAF1-203ENST00000598359 PTPRTO14522 1441 aa21.47■■□□□ 1.03
SCAF1-203ENST00000598359 FGD6Q6ZV73 1430 aa21.47■■□□□ 1.03
SCAF1-203ENST00000598359 LTBP4Q8N2S1 1624 aa21.46■■□□□ 1.03
SCAF1-203ENST00000598359 ABCC5O15440 1437 aa21.46■■□□□ 1.03
SCAF1-203ENST00000598359 KDM5DQ9BY66 1539 aa21.45■■□□□ 1.02
SCAF1-203ENST00000598359 MYO3AQ8NEV4 1616 aa21.44■■□□□ 1.02
SCAF1-203ENST00000598359 FBXO31Q5XUX0 539 aaPredicted RBP21.44■■□□□ 1.02
SCAF1-203ENST00000598359 WASHC2CQ9Y4E1 1318 aa21.44■■□□□ 1.02
SCAF1-203ENST00000598359 CROCC2H7BZ55 1655 aa21.43■■□□□ 1.02
SCAF1-203ENST00000598359 DAPK1P53355 1430 aa21.42■■□□□ 1.02
SCAF1-203ENST00000598359 TCOF1Q13428 1488 aaKnown RBP21.42■■□□□ 1.02
SCAF1-203ENST00000598359 IQSEC2Q5JU85 1478 aa21.42■■□□□ 1.02
SCAF1-203ENST00000598359 CAMSAP1Q5T5Y3 1602 aa21.41■■□□□ 1.02
SCAF1-203ENST00000598359 NCOA1Q15788 1441 aa21.41■■□□□ 1.02
SCAF1-203ENST00000598359 RRP7BPQ9NSQ0 103 aa21.41■■□□□ 1.02
SCAF1-203ENST00000598359 DNMT1P26358 1616 aaKnown RBP21.4■■□□□ 1.02
SCAF1-203ENST00000598359 RNF17Q9BXT8 1623 aaKnown RBP21.4■■□□□ 1.02
SCAF1-203ENST00000598359 CEP170BQ9Y4F5 1589 aaPredicted RBP21.4■■□□□ 1.02
SCAF1-203ENST00000598359 SHANK2Q9UPX8 1470 aa21.39■■□□□ 1.02
SCAF1-203ENST00000598359 KIF15Q9NS87 1388 aa21.39■■□□□ 1.02
SCAF1-203ENST00000598359 CHIC2Q9UKJ5 165 aa21.39■■□□□ 1.01
SCAF1-203ENST00000598359 DUOX2Q9NRD8 1548 aa21.39■■□□□ 1.01
SCAF1-203ENST00000598359 ZNF142P52746 1687 aaPredicted RBP21.38■■□□□ 1.01
SCAF1-203ENST00000598359 PZPP20742 1482 aa21.38■■□□□ 1.01
SCAF1-203ENST00000598359 MROH1Q8NDA8 1641 aa21.37■■□□□ 1.01
SCAF1-203ENST00000598359 EIF2AK4Q9P2K8 1649 aaKnown RBP21.37■■□□□ 1.01
SCAF1-203ENST00000598359 NCKAP5LQ9HCH0 1330 aa21.37■■□□□ 1.01
SCAF1-203ENST00000598359 FAM135AQ9P2D6 1515 aa21.37■■□□□ 1.01
SCAF1-203ENST00000598359 TNRQ92752 1358 aa21.36■■□□□ 1.01
SCAF1-203ENST00000598359 ABCC3O15438 1527 aa21.36■■□□□ 1.01
SCAF1-203ENST00000598359 FAM50AQ14320 339 aaKnown RBP21.36■■□□□ 1.01
SCAF1-203ENST00000598359 PPARGC1BQ86YN6 1023 aaKnown RBP21.35■■□□□ 1.01
SCAF1-203ENST00000598359 A2ML1A8K2U0 1454 aa21.33■■□□□ 1.01
SCAF1-203ENST00000598359 CEP152O94986 1710 aa21.32■■□□□ 1
SCAF1-203ENST00000598359 ERBINQ96RT1 1412 aa21.3■■□□□ 1
SCAF1-203ENST00000598359 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.3■■□□□ 1
SCAF1-203ENST00000598359 ZC3H13Q5T200 1668 aaKnown RBP21.3■■□□□ 1
SCAF1-203ENST00000598359 ANKRD30AQ9BXX3 1397 aa21.29■■□□□ 1
SCAF1-203ENST00000598359 PLA2R1Q13018 1463 aa21.28■■□□□ 1
SCAF1-203ENST00000598359 PRDM15P57071 1507 aaPredicted RBP21.26■□□□□ 0.99
SCAF1-203ENST00000598359 UBAP1LF5GYI3 381 aa21.26■□□□□ 0.99
SCAF1-203ENST00000598359 PKD2Q13563 968 aa21.25■□□□□ 0.99
SCAF1-203ENST00000598359 ERVK-7P63135 1459 aa21.25■□□□□ 0.99
SCAF1-203ENST00000598359 ADGRL2O95490 1459 aa21.23■□□□□ 0.99
SCAF1-203ENST00000598359 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.23■□□□□ 0.99
SCAF1-203ENST00000598359 DEPDC5O75140 1603 aa21.22■□□□□ 0.99
SCAF1-203ENST00000598359 NLRP1Q9C000 1473 aa21.22■□□□□ 0.99
SCAF1-203ENST00000598359 ZNF335Q9H4Z2 1342 aaPredicted RBP21.22■□□□□ 0.99
SCAF1-203ENST00000598359 UGGT1Q9NYU2 1555 aa21.21■□□□□ 0.99
SCAF1-203ENST00000598359 CFAP65Q6ZU64 1925 aaKnown RBP21.21■□□□□ 0.99
SCAF1-203ENST00000598359 NEURL4Q96JN8 1562 aa21.19■□□□□ 0.98
SCAF1-203ENST00000598359 THEMISQ8N1K5 641 aaPredicted RBP21.18■□□□□ 0.98
SCAF1-203ENST00000598359 KANK1Q14678 1352 aa21.18■□□□□ 0.98
SCAF1-203ENST00000598359 ITGAEP38570 1179 aa21.17■□□□□ 0.98
SCAF1-203ENST00000598359 POLR1AO95602 1720 aaPredicted RBP21.17■□□□□ 0.98
SCAF1-203ENST00000598359 ARHGAP31Q2M1Z3 1444 aa21.16■□□□□ 0.98
SCAF1-203ENST00000598359 VWDEQ8N2E2 1590 aa21.15■□□□□ 0.98
SCAF1-203ENST00000598359 MED1Q15648 1581 aaPredicted RBP21.14■□□□□ 0.98
SCAF1-203ENST00000598359 ANKRD50Q9ULJ7 1429 aa21.14■□□□□ 0.98
SCAF1-203ENST00000598359 ANKLE2Q86XL3 938 aa21.14■□□□□ 0.97
SCAF1-203ENST00000598359 LMTK2Q8IWU2 1503 aa21.12■□□□□ 0.97
SCAF1-203ENST00000598359 UBR1Q8IWV7 1749 aa21.1■□□□□ 0.97
SCAF1-203ENST00000598359 HSPA1LP34931 641 aa21.09■□□□□ 0.97
SCAF1-203ENST00000598359 NPHP4O75161 1426 aaPredicted RBP21.09■□□□□ 0.97
SCAF1-203ENST00000598359 EFCAB6Q5THR3 1501 aa21.09■□□□□ 0.97
SCAF1-203ENST00000598359 SCAF1Q9H7N4 1312 aaKnown RBP21.07■□□□□ 0.96
SCAF1-203ENST00000598359 PIK3C2BO00750 1634 aa21.07■□□□□ 0.96
SCAF1-203ENST00000598359 SYNMO15061 1565 aa21.06■□□□□ 0.96
SCAF1-203ENST00000598359 ROCK1Q13464 1354 aa21.06■□□□□ 0.96
SCAF1-203ENST00000598359 MED14O60244 1454 aa21.06■□□□□ 0.96
SCAF1-203ENST00000598359 PIP4K2BP78356 416 aa21.05■□□□□ 0.96
SCAF1-203ENST00000598359 IDI1Q13907 227 aa21.04■□□□□ 0.96
SCAF1-203ENST00000598359 IQGAP1P46940 1657 aa21.03■□□□□ 0.96
SCAF1-203ENST00000598359 LTKP29376 864 aa21.03■□□□□ 0.96
SCAF1-203ENST00000598359 NOS1P29475 1434 aa21.03■□□□□ 0.96
SCAF1-203ENST00000598359 UNC13BO14795 1591 aa21.02■□□□□ 0.96
SCAF1-203ENST00000598359 STAG3Q9UJ98 1225 aa21.02■□□□□ 0.96
SCAF1-203ENST00000598359 ARHGAP23Q9P227 1491 aa21.01■□□□□ 0.95
SCAF1-203ENST00000598359 SCAF11Q99590 1463 aaKnown RBP21.01■□□□□ 0.95
SCAF1-203ENST00000598359 SLIT1O75093 1534 aa21■□□□□ 0.95
SCAF1-203ENST00000598359 TOM1O60784 492 aa21■□□□□ 0.95
SCAF1-203ENST00000598359 TXNDC2Q86VQ3 553 aa21■□□□□ 0.95
SCAF1-203ENST00000598359 TET3O43151 1660 aa20.99■□□□□ 0.95
SCAF1-203ENST00000598359 PHF23Q9BUL5 403 aaPredicted RBP20.99■□□□□ 0.95
SCAF1-203ENST00000598359 RRBP1Q9P2E9 1410 aaKnown RBP20.98■□□□□ 0.95
SCAF1-203ENST00000598359 TMEM2Q9UHN6 1383 aa20.97■□□□□ 0.95
SCAF1-203ENST00000598359 RPRD2Q5VT52 1461 aaKnown RBP20.96■□□□□ 0.95
SCAF1-203ENST00000598359 CPS1P31327 1500 aa20.96■□□□□ 0.95
SCAF1-203ENST00000598359 GCC2Q8IWJ2 1684 aa20.96■□□□□ 0.95
SCAF1-203ENST00000598359 EID1Q9Y6B2 187 aa20.95■□□□□ 0.94
SCAF1-203ENST00000598359 NUP155O75694 1391 aa20.95■□□□□ 0.94
SCAF1-203ENST00000598359 ADGRB3O60242 1522 aa20.94■□□□□ 0.94
SCAF1-203ENST00000598359 IQGAP3Q86VI3 1631 aa20.94■□□□□ 0.94
SCAF1-203ENST00000598359 STRCP1A6NGW2 1772 aa20.94■□□□□ 0.94
SCAF1-203ENST00000598359 E9PCH4 1651 aa20.93■□□□□ 0.94
SCAF1-203ENST00000598359 SENP3Q9H4L4 574 aaPredicted RBP20.93■□□□□ 0.94
SCAF1-203ENST00000598359 SLC52A1Q9NWF4 448 aa20.93■□□□□ 0.94
SCAF1-203ENST00000598359 KDM5AP29375 1690 aaKnown RBP20.92■□□□□ 0.94
SCAF1-203ENST00000598359 CHGAP10645 457 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms