RNA–Protein interactions for RNA: ENST00000598359.5

SCAF1-203, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-203ENST00000598359 NISCHQ9Y2I1 1504 aa34.01■■■■□ 3.04
SCAF1-203ENST00000598359 CCDC180Q9P1Z9 1646 aa30.33■■■□□ 2.45
SCAF1-203ENST00000598359 ABCC9O60706 1549 aa30.17■■■□□ 2.42
SCAF1-203ENST00000598359 DNAJC5BQ9UF47 199 aa28.94■■■□□ 2.22
SCAF1-203ENST00000598359 RB1CC1Q8TDY2 1594 aa28.75■■■□□ 2.19
SCAF1-203ENST00000598359 DCAF8L2P0C7V8 631 aa28.67■■■□□ 2.18
SCAF1-203ENST00000598359 NACADO15069 1562 aa28.61■■■□□ 2.17
SCAF1-203ENST00000598359 MYO15BQ96JP2 1530 aa28.26■■■□□ 2.11
SCAF1-203ENST00000598359 ZCCHC6Q5VYS8 1495 aaKnown RBP28.25■■■□□ 2.11
SCAF1-203ENST00000598359 PABPN1Q86U42 306 aaKnown RBP eCLIP28.16■■■□□ 2.1
SCAF1-203ENST00000598359 UNC13AQ9UPW8 1703 aa28.13■■■□□ 2.09
SCAF1-203ENST00000598359 DCAF1Q9Y4B6 1507 aa28.04■■■□□ 2.08
SCAF1-203ENST00000598359 BICRAQ9NZM4 1560 aa27.95■■■□□ 2.07
SCAF1-203ENST00000598359 SCRIBQ14160 1630 aa27.78■■■□□ 2.04
SCAF1-203ENST00000598359 SHROOM4Q9ULL8 1493 aa27.47■■□□□ 1.99
SCAF1-203ENST00000598359 CC2D2AQ9P2K1 1620 aa27.26■■□□□ 1.95
SCAF1-203ENST00000598359 CECR2Q9BXF3 1484 aa27.25■■□□□ 1.95
SCAF1-203ENST00000598359 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
SCAF1-203ENST00000598359 DNAJC5Q9H3Z4 198 aa27.09■■□□□ 1.93
SCAF1-203ENST00000598359 SMARCA4P51532 1647 aa26.47■■□□□ 1.83
SCAF1-203ENST00000598359 ATAD2BQ9ULI0 1458 aa26.42■■□□□ 1.82
SCAF1-203ENST00000598359 NCAPD3P42695 1498 aa26.42■■□□□ 1.82
SCAF1-203ENST00000598359 BAZ1AQ9NRL2 1556 aaPredicted RBP26.36■■□□□ 1.81
SCAF1-203ENST00000598359 SMARCA2P51531 1590 aa26.32■■□□□ 1.8
SCAF1-203ENST00000598359 CUX2O14529 1486 aa26.28■■□□□ 1.8
SCAF1-203ENST00000598359 MROH2BQ7Z745 1585 aa26.25■■□□□ 1.79
SCAF1-203ENST00000598359 HMGXB3Q12766 1538 aa26.24■■□□□ 1.79
SCAF1-203ENST00000598359 BAZ1BQ9UIG0 1483 aaKnown RBP26.18■■□□□ 1.78
SCAF1-203ENST00000598359 PEG3Q9GZU2 1588 aa26.16■■□□□ 1.78
SCAF1-203ENST00000598359 ERCC6Q03468 1493 aa26.1■■□□□ 1.77
SCAF1-203ENST00000598359 NESP48681 1621 aa26.01■■□□□ 1.75
SCAF1-203ENST00000598359 WIZO95785 1651 aa25.96■■□□□ 1.75
SCAF1-203ENST00000598359 RSF1Q96T23 1441 aaPredicted RBP25.8■■□□□ 1.72
SCAF1-203ENST00000598359 LAMC3Q9Y6N6 1575 aa25.77■■□□□ 1.72
SCAF1-203ENST00000598359 CADPSQ9ULU8 1353 aa25.65■■□□□ 1.7
SCAF1-203ENST00000598359 KIF21AQ7Z4S6 1674 aa25.64■■□□□ 1.7
SCAF1-203ENST00000598359 THOC2Q8NI27 1593 aaKnown RBP25.62■■□□□ 1.69
SCAF1-203ENST00000598359 TRIM41Q8WV44 630 aa25.62■■□□□ 1.69
SCAF1-203ENST00000598359 PDS5BQ9NTI5 1447 aa25.62■■□□□ 1.69
SCAF1-203ENST00000598359 TOP2AP11388 1531 aaKnown RBP25.61■■□□□ 1.69
SCAF1-203ENST00000598359 CFTRP13569 1480 aa25.42■■□□□ 1.66
SCAF1-203ENST00000598359 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
SCAF1-203ENST00000598359 FANCD2Q9BXW9 1451 aa25.39■■□□□ 1.65
SCAF1-203ENST00000598359 CEP164Q9UPV0 1460 aa25.37■■□□□ 1.65
SCAF1-203ENST00000598359 CCDC88BA6NC98 1476 aa25.35■■□□□ 1.65
SCAF1-203ENST00000598359 WDR62O43379 1518 aa25.32■■□□□ 1.64
SCAF1-203ENST00000598359 URB2Q14146 1524 aaKnown RBP25.18■■□□□ 1.62
SCAF1-203ENST00000598359 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
SCAF1-203ENST00000598359 OSCARQ8IYS5 282 aa24.98■■□□□ 1.59
SCAF1-203ENST00000598359 SUPT5HO00267 1087 aaKnown RBP24.97■■□□□ 1.59
SCAF1-203ENST00000598359 TOPBP1Q92547 1522 aa24.94■■□□□ 1.58
SCAF1-203ENST00000598359 DNMBPQ6XZF7 1577 aa24.85■■□□□ 1.57
SCAF1-203ENST00000598359 ZNF608Q9ULD9 1512 aaPredicted RBP24.84■■□□□ 1.57
SCAF1-203ENST00000598359 IFT140Q96RY7 1462 aa24.83■■□□□ 1.56
SCAF1-203ENST00000598359 ABCC8Q09428 1581 aa24.82■■□□□ 1.56
SCAF1-203ENST00000598359 RIMBP3CA6NJZ7 1639 aa24.78■■□□□ 1.56
SCAF1-203ENST00000598359 RIMBP3BA6NNM3 1639 aa24.78■■□□□ 1.56
SCAF1-203ENST00000598359 RIMBP3Q9UFD9 1639 aa24.78■■□□□ 1.56
SCAF1-203ENST00000598359 POLA1P09884 1462 aaPredicted RBP24.71■■□□□ 1.55
SCAF1-203ENST00000598359 TARBP1Q13395 1621 aaKnown RBP24.69■■□□□ 1.54
SCAF1-203ENST00000598359 EIF4G3O43432 1585 aaKnown RBP24.68■■□□□ 1.54
SCAF1-203ENST00000598359 RAD54L2Q9Y4B4 1467 aa24.65■■□□□ 1.54
SCAF1-203ENST00000598359 CUX1P39880 1505 aa24.65■■□□□ 1.54
SCAF1-203ENST00000598359 AQRO60306 1485 aaKnown RBP eCLIP24.64■■□□□ 1.542e-6■■■■□ 23.2
SCAF1-203ENST00000598359 FGD5Q6ZNL6 1462 aa24.61■■□□□ 1.53
SCAF1-203ENST00000598359 SOGA1O94964 1423 aa24.6■■□□□ 1.53
SCAF1-203ENST00000598359 ARHGEF11O15085 1522 aa24.58■■□□□ 1.53
SCAF1-203ENST00000598359 TDRD9Q8NDG6 1382 aaKnown RBP24.55■■□□□ 1.52
SCAF1-203ENST00000598359 CYB5RLQ6IPT4 315 aa24.46■■□□□ 1.51
SCAF1-203ENST00000598359 CHD1O14646 1710 aa24.44■■□□□ 1.5
SCAF1-203ENST00000598359 FBLN2P98095 1184 aa24.44■■□□□ 1.5
SCAF1-203ENST00000598359 TRHP20396 242 aaPredicted RBP24.42■■□□□ 1.5
SCAF1-203ENST00000598359 SNAPC4Q5SXM2 1469 aa24.39■■□□□ 1.5
SCAF1-203ENST00000598359 WDR97A6NE52 1622 aa24.39■■□□□ 1.49
SCAF1-203ENST00000598359 GRIN2BQ13224 1484 aa24.33■■□□□ 1.49
SCAF1-203ENST00000598359 SYNJ1O43426 1573 aa24.33■■□□□ 1.48
SCAF1-203ENST00000598359 WRNQ14191 1432 aaPredicted RBP eCLIP24.32■■□□□ 1.48
SCAF1-203ENST00000598359 ABCA10Q8WWZ4 1543 aa24.3■■□□□ 1.48
SCAF1-203ENST00000598359 GAPVD1Q14C86 1478 aa24.3■■□□□ 1.48
SCAF1-203ENST00000598359 TOP2BQ02880 1626 aa24.29■■□□□ 1.48
SCAF1-203ENST00000598359 BIVM-ERCC5R4GMW8 1640 aa24.28■■□□□ 1.48
SCAF1-203ENST00000598359 ARAP1Q96P48 1450 aa24.28■■□□□ 1.48
SCAF1-203ENST00000598359 MAGI1Q96QZ7 1491 aaPredicted RBP24.27■■□□□ 1.48
SCAF1-203ENST00000598359 PBRM1Q86U86 1689 aa24.27■■□□□ 1.48
SCAF1-203ENST00000598359 ABCA5Q8WWZ7 1642 aa24.26■■□□□ 1.47
SCAF1-203ENST00000598359 CHMP7Q8WUX9 453 aaPredicted RBP24.26■■□□□ 1.47
SCAF1-203ENST00000598359 AEBP2Q6ZN18 517 aaPredicted RBP24.23■■□□□ 1.47
SCAF1-203ENST00000598359 SYNJ2O15056 1496 aa24.21■■□□□ 1.47
SCAF1-203ENST00000598359 CLASP1Q7Z460 1538 aa24.15■■□□□ 1.46
SCAF1-203ENST00000598359 ADAMTS12P58397 1594 aa24.06■■□□□ 1.44
SCAF1-203ENST00000598359 GRIN2AQ12879 1464 aa24.03■■□□□ 1.44
SCAF1-203ENST00000598359 ERICH3Q5RHP9 1530 aa24■■□□□ 1.43
SCAF1-203ENST00000598359 FHAD1B1AJZ9 1412 aa23.99■■□□□ 1.43
SCAF1-203ENST00000598359 CEP170Q5SW79 1584 aa23.95■■□□□ 1.43
SCAF1-203ENST00000598359 NUP160Q12769 1436 aa23.92■■□□□ 1.42
SCAF1-203ENST00000598359 ERCC6L2Q5T890 1561 aa23.87■■□□□ 1.41
SCAF1-203ENST00000598359 KIF27Q86VH2 1401 aa23.82■■□□□ 1.4
SCAF1-203ENST00000598359 IGF1RP08069 1367 aa23.8■■□□□ 1.4
SCAF1-203ENST00000598359 SHROOM2Q13796 1616 aa23.77■■□□□ 1.4
SCAF1-203ENST00000598359 RUSC2Q8N2Y8 1516 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms