RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 FBXO31Q5XUX0 539 aaPredicted RBP16.04■□□□□ 0.16
LIG1-209ENST00000596104 NCOA2Q15596 1464 aa16.03■□□□□ 0.16
LIG1-209ENST00000596104 TNRQ92752 1358 aa16.03■□□□□ 0.16
LIG1-209ENST00000596104 CAMSAP2Q08AD1 1489 aa16.03■□□□□ 0.16
LIG1-209ENST00000596104 DNMT1P26358 1616 aaKnown RBP16.02■□□□□ 0.16
LIG1-209ENST00000596104 RSPH4AQ5TD94 716 aa16.02■□□□□ 0.16
LIG1-209ENST00000596104 PZPP20742 1482 aa16.02■□□□□ 0.15
LIG1-209ENST00000596104 FAM135AQ9P2D6 1515 aa16.01■□□□□ 0.15
LIG1-209ENST00000596104 KDM5DQ9BY66 1539 aa16■□□□□ 0.15
LIG1-209ENST00000596104 WASHC2CQ9Y4E1 1318 aa15.98■□□□□ 0.15
LIG1-209ENST00000596104 NEURL4Q96JN8 1562 aa15.98■□□□□ 0.15
LIG1-209ENST00000596104 MIA2Q96PC5 1412 aa15.97■□□□□ 0.15
LIG1-209ENST00000596104 ARHGEF5Q12774 1597 aa15.96■□□□□ 0.14
LIG1-209ENST00000596104 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.95■□□□□ 0.14
LIG1-209ENST00000596104 NLRP1Q9C000 1473 aa15.95■□□□□ 0.14
LIG1-209ENST00000596104 TSPY4P0CV99 314 aa15.94■□□□□ 0.14
LIG1-209ENST00000596104 TSPY10P0CW01 314 aa15.94■□□□□ 0.14
LIG1-209ENST00000596104 ANKLE2Q86XL3 938 aa15.94■□□□□ 0.14
LIG1-209ENST00000596104 SHANK2Q9UPX8 1470 aa15.94■□□□□ 0.14
LIG1-209ENST00000596104 CPS1P31327 1500 aa15.94■□□□□ 0.14
LIG1-209ENST00000596104 THEMISQ8N1K5 641 aaPredicted RBP15.93■□□□□ 0.14
LIG1-209ENST00000596104 MED14O60244 1454 aa15.91■□□□□ 0.14
LIG1-209ENST00000596104 LRRC9Q6ZRR7 1453 aa15.91■□□□□ 0.14
LIG1-209ENST00000596104 VPS8Q8N3P4 1428 aa15.91■□□□□ 0.14
LIG1-209ENST00000596104 UGGT1Q9NYU2 1555 aa15.91■□□□□ 0.14
LIG1-209ENST00000596104 HSPA1LP34931 641 aa15.9■□□□□ 0.14
LIG1-209ENST00000596104 NPHP4O75161 1426 aaPredicted RBP15.9■□□□□ 0.14
LIG1-209ENST00000596104 VWDEQ8N2E2 1590 aa15.9■□□□□ 0.14
LIG1-209ENST00000596104 POLR1AO95602 1720 aaPredicted RBP15.9■□□□□ 0.14
LIG1-209ENST00000596104 ABCC3O15438 1527 aa15.89■□□□□ 0.13
LIG1-209ENST00000596104 TOM1O60784 492 aa15.89■□□□□ 0.13
LIG1-209ENST00000596104 MAST1Q9Y2H9 1570 aa15.88■□□□□ 0.13
LIG1-209ENST00000596104 RNF17Q9BXT8 1623 aaKnown RBP15.88■□□□□ 0.13
LIG1-209ENST00000596104 PIP4K2BP78356 416 aa15.88■□□□□ 0.13
LIG1-209ENST00000596104 DEPDC5O75140 1603 aa15.87■□□□□ 0.13
LIG1-209ENST00000596104 KANK4Q5T7N3 995 aaPredicted RBP15.87■□□□□ 0.13
LIG1-209ENST00000596104 SCAF1Q9H7N4 1312 aaKnown RBP15.87■□□□□ 0.13
LIG1-209ENST00000596104 ERVK-7P63135 1459 aa15.86■□□□□ 0.13
LIG1-209ENST00000596104 MROH1Q8NDA8 1641 aa15.85■□□□□ 0.13
LIG1-209ENST00000596104 MAP3K1Q13233 1512 aa15.84■□□□□ 0.13
LIG1-209ENST00000596104 ALKQ9UM73 1620 aa15.84■□□□□ 0.13
LIG1-209ENST00000596104 MYOM3Q5VTT5 1437 aa15.84■□□□□ 0.13
LIG1-209ENST00000596104 LOC105371045A0A1W2PR82 267 aa15.83■□□□□ 0.12
LIG1-209ENST00000596104 EIF2AK4Q9P2K8 1649 aaKnown RBP15.83■□□□□ 0.12
LIG1-209ENST00000596104 ZC3H13Q5T200 1668 aaKnown RBP15.83■□□□□ 0.12
LIG1-209ENST00000596104 MED1Q15648 1581 aaPredicted RBP15.82■□□□□ 0.12
LIG1-209ENST00000596104 IQGAP1P46940 1657 aa15.8■□□□□ 0.12
LIG1-209ENST00000596104 LRRC7Q96NW7 1537 aa15.8■□□□□ 0.12
LIG1-209ENST00000596104 DUOX2Q9NRD8 1548 aa15.79■□□□□ 0.12
LIG1-209ENST00000596104 ARHGAP31Q2M1Z3 1444 aa15.78■□□□□ 0.12
LIG1-209ENST00000596104 KIF15Q9NS87 1388 aa15.78■□□□□ 0.12
LIG1-209ENST00000596104 SCAF11Q99590 1463 aaKnown RBP15.78■□□□□ 0.12
LIG1-209ENST00000596104 ARHGAP23Q9P227 1491 aa15.78■□□□□ 0.12
LIG1-209ENST00000596104 ABCC5O15440 1437 aa15.77■□□□□ 0.12
LIG1-209ENST00000596104 LTKP29376 864 aa15.77■□□□□ 0.12
LIG1-209ENST00000596104 SLIT1O75093 1534 aa15.76■□□□□ 0.11
LIG1-209ENST00000596104 PRDM15P57071 1507 aaPredicted RBP15.76■□□□□ 0.11
LIG1-209ENST00000596104 ERBINQ96RT1 1412 aa15.76■□□□□ 0.11
LIG1-209ENST00000596104 STRCP1A6NGW2 1772 aa15.75■□□□□ 0.11
LIG1-209ENST00000596104 SYNMO15061 1565 aa15.75■□□□□ 0.11
LIG1-209ENST00000596104 UBR1Q8IWV7 1749 aa15.74■□□□□ 0.11
LIG1-209ENST00000596104 TXNDC2Q86VQ3 553 aa15.74■□□□□ 0.11
LIG1-209ENST00000596104 RRP7BPQ9NSQ0 103 aa15.74■□□□□ 0.11
LIG1-209ENST00000596104 CEP152O94986 1710 aa15.74■□□□□ 0.11
LIG1-209ENST00000596104 DAPK1P53355 1430 aa15.71■□□□□ 0.11
LIG1-209ENST00000596104 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.7■□□□□ 0.14e-12■■■■■ 38.4
LIG1-209ENST00000596104 TMEM2Q9UHN6 1383 aa15.7■□□□□ 0.1
LIG1-209ENST00000596104 EID1Q9Y6B2 187 aa15.69■□□□□ 0.1
LIG1-209ENST00000596104 FGD6Q6ZV73 1430 aa15.68■□□□□ 0.1
LIG1-209ENST00000596104 PTPN23Q9H3S7 1636 aa15.68■□□□□ 0.1
LIG1-209ENST00000596104 CROCC2H7BZ55 1655 aa15.68■□□□□ 0.1
LIG1-209ENST00000596104 PHF23Q9BUL5 403 aaPredicted RBP15.68■□□□□ 0.1
LIG1-209ENST00000596104 SENP3Q9H4L4 574 aaPredicted RBP15.68■□□□□ 0.1
LIG1-209ENST00000596104 LMTK2Q8IWU2 1503 aa15.68■□□□□ 0.1
LIG1-209ENST00000596104 KANK1Q14678 1352 aa15.67■□□□□ 0.1
LIG1-209ENST00000596104 IDI1Q13907 227 aa15.67■□□□□ 0.1
LIG1-209ENST00000596104 PIK3C2BO00750 1634 aa15.66■□□□□ 0.1
LIG1-209ENST00000596104 ANKRD30AQ9BXX3 1397 aa15.65■□□□□ 0.1
LIG1-209ENST00000596104 EFCAB6Q5THR3 1501 aa15.64■□□□□ 0.09
LIG1-209ENST00000596104 NOS1P29475 1434 aa15.64■□□□□ 0.09
LIG1-209ENST00000596104 APLP2Q06481 763 aa15.64■□□□□ 0.09
LIG1-209ENST00000596104 STAG3Q9UJ98 1225 aa15.64■□□□□ 0.09
LIG1-209ENST00000596104 CHIC2Q9UKJ5 165 aa15.64■□□□□ 0.09
LIG1-209ENST00000596104 CFAP65Q6ZU64 1925 aaKnown RBP15.63■□□□□ 0.09
LIG1-209ENST00000596104 FAM135BQ49AJ0 1406 aa15.63■□□□□ 0.09
LIG1-209ENST00000596104 TMEM94Q12767 1356 aa15.62■□□□□ 0.09
LIG1-209ENST00000596104 KCNA6P17658 529 aa15.62■□□□□ 0.09
LIG1-209ENST00000596104 RGS17Q9UGC6 210 aaPredicted RBP15.62■□□□□ 0.09
LIG1-209ENST00000596104 TET3O43151 1660 aa15.61■□□□□ 0.09
LIG1-209ENST00000596104 KDM5AP29375 1690 aaKnown RBP15.61■□□□□ 0.09
LIG1-209ENST00000596104 SLC26A8Q96RN1 970 aa15.61■□□□□ 0.09
LIG1-209ENST00000596104 ADGRL2O95490 1459 aa15.6■□□□□ 0.09
LIG1-209ENST00000596104 XIRP1Q702N8 1843 aaKnown RBP15.6■□□□□ 0.09
LIG1-209ENST00000596104 SLC52A1Q9NWF4 448 aa15.59■□□□□ 0.09
LIG1-209ENST00000596104 ADGRB3O60242 1522 aa15.58■□□□□ 0.09
LIG1-209ENST00000596104 PROSER2Q86WR7 435 aaPredicted RBP15.57■□□□□ 0.08
LIG1-209ENST00000596104 RBM33Q96EV2 1170 aaKnown RBP15.57■□□□□ 0.08
LIG1-209ENST00000596104 NKTRP30414 1462 aaKnown RBP15.56■□□□□ 0.08
LIG1-209ENST00000596104 NWD1Q149M9 1564 aa15.55■□□□□ 0.08
LIG1-209ENST00000596104 RPRD2Q5VT52 1461 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms