RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 NISCHQ9Y2I1 1504 aa25.32■■□□□ 1.64
LIG1-209ENST00000596104 ABCC9O60706 1549 aa22.92■■□□□ 1.26
LIG1-209ENST00000596104 CCDC180Q9P1Z9 1646 aa22.71■■□□□ 1.23
LIG1-209ENST00000596104 RB1CC1Q8TDY2 1594 aa21.71■■□□□ 1.07
LIG1-209ENST00000596104 DNAJC5BQ9UF47 199 aa21.69■■□□□ 1.06
LIG1-209ENST00000596104 NACADO15069 1562 aa21.55■■□□□ 1.04
LIG1-209ENST00000596104 DCAF8L2P0C7V8 631 aa21.39■■□□□ 1.01
LIG1-209ENST00000596104 PABPN1Q86U42 306 aaKnown RBP eCLIP21.33■■□□□ 1.01
LIG1-209ENST00000596104 MYO15BQ96JP2 1530 aa21.25■□□□□ 0.99
LIG1-209ENST00000596104 UNC13AQ9UPW8 1703 aa21.13■□□□□ 0.97
LIG1-209ENST00000596104 BICRAQ9NZM4 1560 aa21.13■□□□□ 0.97
LIG1-209ENST00000596104 ZCCHC6Q5VYS8 1495 aaKnown RBP20.96■□□□□ 0.95
LIG1-209ENST00000596104 DCAF1Q9Y4B6 1507 aa20.91■□□□□ 0.94
LIG1-209ENST00000596104 SHROOM4Q9ULL8 1493 aa20.83■□□□□ 0.93
LIG1-209ENST00000596104 SCRIBQ14160 1630 aa20.7■□□□□ 0.9
LIG1-209ENST00000596104 CECR2Q9BXF3 1484 aa20.67■□□□□ 0.9
LIG1-209ENST00000596104 CC2D2AQ9P2K1 1620 aa20.66■□□□□ 0.9
LIG1-209ENST00000596104 EIF4G1Q04637 1599 aaKnown RBP20.6■□□□□ 0.89
LIG1-209ENST00000596104 DNAJC5Q9H3Z4 198 aa20.01■□□□□ 0.79
LIG1-209ENST00000596104 NCAPD3P42695 1498 aa19.95■□□□□ 0.78
LIG1-209ENST00000596104 ATAD2BQ9ULI0 1458 aa19.86■□□□□ 0.77
LIG1-209ENST00000596104 CUX2O14529 1486 aa19.81■□□□□ 0.76
LIG1-209ENST00000596104 ERCC6Q03468 1493 aa19.77■□□□□ 0.76
LIG1-209ENST00000596104 SMARCA4P51532 1647 aa19.75■□□□□ 0.75
LIG1-209ENST00000596104 HMGXB3Q12766 1538 aa19.75■□□□□ 0.75
LIG1-209ENST00000596104 SMARCA2P51531 1590 aa19.74■□□□□ 0.75
LIG1-209ENST00000596104 NESP48681 1621 aa19.65■□□□□ 0.74
LIG1-209ENST00000596104 BAZ1AQ9NRL2 1556 aaPredicted RBP19.64■□□□□ 0.73
LIG1-209ENST00000596104 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
LIG1-209ENST00000596104 PEG3Q9GZU2 1588 aa19.59■□□□□ 0.73
LIG1-209ENST00000596104 MROH2BQ7Z745 1585 aa19.51■□□□□ 0.71
LIG1-209ENST00000596104 LAMC3Q9Y6N6 1575 aa19.46■□□□□ 0.71
LIG1-209ENST00000596104 THOC2Q8NI27 1593 aaKnown RBP19.45■□□□□ 0.7
LIG1-209ENST00000596104 PDS5BQ9NTI5 1447 aa19.38■□□□□ 0.69
LIG1-209ENST00000596104 CADPSQ9ULU8 1353 aa19.32■□□□□ 0.68
LIG1-209ENST00000596104 KIF21AQ7Z4S6 1674 aa19.3■□□□□ 0.68
LIG1-209ENST00000596104 MRC2Q9UBG0 1479 aa19.22■□□□□ 0.67
LIG1-209ENST00000596104 WIZO95785 1651 aa19.21■□□□□ 0.67
LIG1-209ENST00000596104 WDR62O43379 1518 aa19.18■□□□□ 0.66
LIG1-209ENST00000596104 CEP164Q9UPV0 1460 aa19.1■□□□□ 0.65
LIG1-209ENST00000596104 FANCD2Q9BXW9 1451 aa19.09■□□□□ 0.65
LIG1-209ENST00000596104 CFTRP13569 1480 aa19.08■□□□□ 0.64
LIG1-209ENST00000596104 RSF1Q96T23 1441 aaPredicted RBP19.08■□□□□ 0.64
LIG1-209ENST00000596104 TRIM41Q8WV44 630 aa19.01■□□□□ 0.63
LIG1-209ENST00000596104 TOP2AP11388 1531 aaKnown RBP19■□□□□ 0.63
LIG1-209ENST00000596104 URB2Q14146 1524 aaKnown RBP18.95■□□□□ 0.62
LIG1-209ENST00000596104 OSCARQ8IYS5 282 aa18.89■□□□□ 0.61
LIG1-209ENST00000596104 CCDC88BA6NC98 1476 aa18.8■□□□□ 0.6
LIG1-209ENST00000596104 IFT140Q96RY7 1462 aa18.74■□□□□ 0.59
LIG1-209ENST00000596104 ZNF608Q9ULD9 1512 aaPredicted RBP18.74■□□□□ 0.59
LIG1-209ENST00000596104 PRDM2Q13029 1718 aa18.71■□□□□ 0.59
LIG1-209ENST00000596104 TOPBP1Q92547 1522 aa18.7■□□□□ 0.58
LIG1-209ENST00000596104 ABCC8Q09428 1581 aa18.64■□□□□ 0.57
LIG1-209ENST00000596104 RIMBP3CA6NJZ7 1639 aa18.62■□□□□ 0.57
LIG1-209ENST00000596104 RIMBP3BA6NNM3 1639 aa18.62■□□□□ 0.57
LIG1-209ENST00000596104 RIMBP3Q9UFD9 1639 aa18.62■□□□□ 0.57
LIG1-209ENST00000596104 DNMBPQ6XZF7 1577 aa18.6■□□□□ 0.57
LIG1-209ENST00000596104 ARHGEF11O15085 1522 aa18.59■□□□□ 0.57
LIG1-209ENST00000596104 EIF4G3O43432 1585 aaKnown RBP18.58■□□□□ 0.56
LIG1-209ENST00000596104 AQRO60306 1485 aaKnown RBP eCLIP18.54■□□□□ 0.562e-12■■■■■ 52
LIG1-209ENST00000596104 TARBP1Q13395 1621 aaKnown RBP18.53■□□□□ 0.56
LIG1-209ENST00000596104 POLA1P09884 1462 aaPredicted RBP18.52■□□□□ 0.55
LIG1-209ENST00000596104 CYB5RLQ6IPT4 315 aa18.45■□□□□ 0.54
LIG1-209ENST00000596104 RAD54L2Q9Y4B4 1467 aa18.45■□□□□ 0.54
LIG1-209ENST00000596104 SOGA1O94964 1423 aa18.42■□□□□ 0.54
LIG1-209ENST00000596104 FBLN2P98095 1184 aa18.42■□□□□ 0.54
LIG1-209ENST00000596104 TDRD9Q8NDG6 1382 aaKnown RBP18.42■□□□□ 0.54
LIG1-209ENST00000596104 ARAP1Q96P48 1450 aa18.41■□□□□ 0.54
LIG1-209ENST00000596104 CHD1O14646 1710 aa18.41■□□□□ 0.54
LIG1-209ENST00000596104 FGD5Q6ZNL6 1462 aa18.37■□□□□ 0.53
LIG1-209ENST00000596104 SNAPC4Q5SXM2 1469 aa18.34■□□□□ 0.53
LIG1-209ENST00000596104 CUX1P39880 1505 aa18.33■□□□□ 0.53
LIG1-209ENST00000596104 WDR97A6NE52 1622 aa18.32■□□□□ 0.52
LIG1-209ENST00000596104 CLASP1Q7Z460 1538 aa18.29■□□□□ 0.52
LIG1-209ENST00000596104 MAGI1Q96QZ7 1491 aaPredicted RBP18.29■□□□□ 0.52
LIG1-209ENST00000596104 GRIN2BQ13224 1484 aa18.28■□□□□ 0.52
LIG1-209ENST00000596104 CHMP7Q8WUX9 453 aaPredicted RBP18.28■□□□□ 0.52
LIG1-209ENST00000596104 TRHP20396 242 aaPredicted RBP18.27■□□□□ 0.52
LIG1-209ENST00000596104 SYNJ1O43426 1573 aa18.23■□□□□ 0.51
LIG1-209ENST00000596104 SYNJ2O15056 1496 aa18.23■□□□□ 0.51
LIG1-209ENST00000596104 GAPVD1Q14C86 1478 aa18.19■□□□□ 0.5
LIG1-209ENST00000596104 ABCA10Q8WWZ4 1543 aa18.16■□□□□ 0.5
LIG1-209ENST00000596104 ABCA5Q8WWZ7 1642 aa18.12■□□□□ 0.49
LIG1-209ENST00000596104 PBRM1Q86U86 1689 aa18.09■□□□□ 0.49
LIG1-209ENST00000596104 SUPT5HO00267 1087 aaKnown RBP18.07■□□□□ 0.48
LIG1-209ENST00000596104 WRNQ14191 1432 aaPredicted RBP eCLIP18.06■□□□□ 0.48
LIG1-209ENST00000596104 GRIN2AQ12879 1464 aa18.04■□□□□ 0.48
LIG1-209ENST00000596104 NUP160Q12769 1436 aa18.02■□□□□ 0.48
LIG1-209ENST00000596104 ADAMTS12P58397 1594 aa18■□□□□ 0.47
LIG1-209ENST00000596104 ERCC6L2Q5T890 1561 aa18■□□□□ 0.47
LIG1-209ENST00000596104 CEP170Q5SW79 1584 aa17.97■□□□□ 0.47
LIG1-209ENST00000596104 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
LIG1-209ENST00000596104 FHAD1B1AJZ9 1412 aa17.97■□□□□ 0.47
LIG1-209ENST00000596104 BIVM-ERCC5R4GMW8 1640 aa17.95■□□□□ 0.46
LIG1-209ENST00000596104 ERICH3Q5RHP9 1530 aa17.91■□□□□ 0.46
LIG1-209ENST00000596104 SHROOM2Q13796 1616 aa17.9■□□□□ 0.46
LIG1-209ENST00000596104 PRG4Q92954 1404 aaPredicted RBP17.83■□□□□ 0.45
LIG1-209ENST00000596104 AEBP2Q6ZN18 517 aaPredicted RBP17.82■□□□□ 0.44
LIG1-209ENST00000596104 JPH4Q96JJ6 628 aa17.82■□□□□ 0.44
LIG1-209ENST00000596104 RUSC2Q8N2Y8 1516 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms