RNA–Protein interactions for RNA: ENST00000595756.1

HOMER3-208, Transcript of homer scaffold protein 3, human

TSL 2

Gene HOMER3, Length 570 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HOMER3-208	ENST00000595756	RNF17	Q9BXT8	1623 aa	Known RBP	28.27	■■■□□ 2.12
HOMER3-208	ENST00000595756	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.26	■■■□□ 2.11
HOMER3-208	ENST00000595756	PLA2R1	Q13018	1463 aa		28.25	■■■□□ 2.11
HOMER3-208	ENST00000595756	TSPY4	P0CV99	314 aa		28.24	■■■□□ 2.11
HOMER3-208	ENST00000595756	TSPY10	P0CW01	314 aa		28.24	■■■□□ 2.11
HOMER3-208	ENST00000595756	CROCC2	H7BZ55	1655 aa		28.23	■■■□□ 2.11
HOMER3-208	ENST00000595756	ZC3H13	Q5T200	1668 aa	Known RBP	28.23	■■■□□ 2.11
HOMER3-208	ENST00000595756	PZP	P20742	1482 aa		28.22	■■■□□ 2.11
HOMER3-208	ENST00000595756	KIF3B	O15066	747 aa		28.22	■■■□□ 2.11
HOMER3-208	ENST00000595756	A2ML1	A8K2U0	1454 aa		28.19	■■■□□ 2.1
HOMER3-208	ENST00000595756	TCOF1	Q13428	1488 aa	Known RBP	28.18	■■■□□ 2.1
HOMER3-208	ENST00000595756	PTPN23	Q9H3S7	1636 aa		28.18	■■■□□ 2.1
HOMER3-208	ENST00000595756	SHANK2	Q9UPX8	1470 aa		28.17	■■■□□ 2.1
HOMER3-208	ENST00000595756	DNMT1	P26358	1616 aa	Known RBP	28.17	■■■□□ 2.1
HOMER3-208	ENST00000595756	LTBP4	Q8N2S1	1624 aa		28.17	■■■□□ 2.1
HOMER3-208	ENST00000595756	MROH1	Q8NDA8	1641 aa		28.14	■■■□□ 2.09
HOMER3-208	ENST00000595756	DUOX2	Q9NRD8	1548 aa		28.13	■■■□□ 2.09
HOMER3-208	ENST00000595756	ABCC3	O15438	1527 aa		28.13	■■■□□ 2.09
HOMER3-208	ENST00000595756	TNR	Q92752	1358 aa		28.12	■■■□□ 2.09
HOMER3-208	ENST00000595756	APLP2	Q06481	763 aa		28.12	■■■□□ 2.09
HOMER3-208	ENST00000595756	WASHC2C	Q9Y4E1	1318 aa		28.12	■■■□□ 2.09
HOMER3-208	ENST00000595756	POLR1A	O95602	1720 aa	Predicted RBP	28.12	■■■□□ 2.09
HOMER3-208	ENST00000595756	IQSEC2	Q5JU85	1478 aa		28.11	■■■□□ 2.09
HOMER3-208	ENST00000595756	PKD2	Q13563	968 aa		28.09	■■■□□ 2.09
HOMER3-208	ENST00000595756	FGD6	Q6ZV73	1430 aa		28.08	■■■□□ 2.09
HOMER3-208	ENST00000595756	NLRP1	Q9C000	1473 aa		28.07	■■■□□ 2.08
HOMER3-208	ENST00000595756	CEP152	O94986	1710 aa		28.06	■■■□□ 2.08
HOMER3-208	ENST00000595756	NCKAP5L	Q9HCH0	1330 aa		28.06	■■■□□ 2.08
HOMER3-208	ENST00000595756	ABCC5	O15440	1437 aa		28.06	■■■□□ 2.08
HOMER3-208	ENST00000595756	PRDM15	P57071	1507 aa	Predicted RBP	28.05	■■■□□ 2.08
HOMER3-208	ENST00000595756	SPATA31D1	Q6ZQQ2	1576 aa		28.05	■■■□□ 2.08
HOMER3-208	ENST00000595756	ERBIN	Q96RT1	1412 aa		28.04	■■■□□ 2.08
HOMER3-208	ENST00000595756	FBXO31	Q5XUX0	539 aa	Predicted RBP	28.04	■■■□□ 2.08
HOMER3-208	ENST00000595756	DAPK1	P53355	1430 aa		28.03	■■■□□ 2.08
HOMER3-208	ENST00000595756	NEURL4	Q96JN8	1562 aa		28.03	■■■□□ 2.08
HOMER3-208	ENST00000595756	KIF15	Q9NS87	1388 aa		28.02	■■■□□ 2.08
HOMER3-208	ENST00000595756	DEPDC5	O75140	1603 aa		28.02	■■■□□ 2.08
HOMER3-208	ENST00000595756	UGGT1	Q9NYU2	1555 aa		27.99	■■■□□ 2.07
HOMER3-208	ENST00000595756	ERVK-7	P63135	1459 aa		27.98	■■■□□ 2.07
HOMER3-208	ENST00000595756	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	27.93	■■■□□ 2.06
HOMER3-208	ENST00000595756	ARHGAP31	Q2M1Z3	1444 aa		27.91	■■■□□ 2.06
HOMER3-208	ENST00000595756	ADGRL2	O95490	1459 aa		27.89	■■■□□ 2.06
HOMER3-208	ENST00000595756	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	27.89	■■■□□ 2.06
HOMER3-208	ENST00000595756	MED14	O60244	1454 aa		27.89	■■■□□ 2.05
HOMER3-208	ENST00000595756	ANKRD30A	Q9BXX3	1397 aa		27.88	■■■□□ 2.05
HOMER3-208	ENST00000595756	UBR1	Q8IWV7	1749 aa		27.88	■■■□□ 2.05
HOMER3-208	ENST00000595756	THEMIS	Q8N1K5	641 aa	Predicted RBP	27.88	■■■□□ 2.05
HOMER3-208	ENST00000595756	RRP7BP	Q9NSQ0	103 aa		27.87	■■■□□ 2.05
HOMER3-208	ENST00000595756	IQGAP1	P46940	1657 aa		27.87	■■■□□ 2.05
HOMER3-208	ENST00000595756	CFAP65	Q6ZU64	1925 aa	Known RBP	27.86	■■■□□ 2.05
HOMER3-208	ENST00000595756	VWDE	Q8N2E2	1590 aa		27.86	■■■□□ 2.05
HOMER3-208	ENST00000595756	LMTK2	Q8IWU2	1503 aa		27.85	■■■□□ 2.05
HOMER3-208	ENST00000595756	CPS1	P31327	1500 aa		27.84	■■■□□ 2.05
HOMER3-208	ENST00000595756	ANKLE2	Q86XL3	938 aa		27.83	■■■□□ 2.05
HOMER3-208	ENST00000595756	NPHP4	O75161	1426 aa	Predicted RBP	27.82	■■■□□ 2.04
HOMER3-208	ENST00000595756	KANK1	Q14678	1352 aa		27.81	■■■□□ 2.04
HOMER3-208	ENST00000595756	KDM5A	P29375	1690 aa	Known RBP	27.78	■■■□□ 2.04
HOMER3-208	ENST00000595756	EFCAB6	Q5THR3	1501 aa		27.77	■■■□□ 2.04
HOMER3-208	ENST00000595756	CHIC2	Q9UKJ5	165 aa		27.77	■■■□□ 2.04
HOMER3-208	ENST00000595756	SLIT1	O75093	1534 aa		27.76	■■■□□ 2.03
HOMER3-208	ENST00000595756	PIK3C2B	O00750	1634 aa		27.75	■■■□□ 2.03
HOMER3-208	ENST00000595756	ARHGAP23	Q9P227	1491 aa		27.75	■■■□□ 2.03
HOMER3-208	ENST00000595756	SCAF11	Q99590	1463 aa	Known RBP	27.72	■■■□□ 2.03
HOMER3-208	ENST00000595756	FAM50A	Q14320	339 aa	Known RBP	27.72	■■■□□ 2.03
HOMER3-208	ENST00000595756	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	27.72	■■■□□ 2.03
HOMER3-208	ENST00000595756	SYNM	O15061	1565 aa		27.72	■■■□□ 2.03
HOMER3-208	ENST00000595756	ANKRD50	Q9ULJ7	1429 aa		27.69	■■■□□ 2.02
HOMER3-208	ENST00000595756	UBAP1L	F5GYI3	381 aa		27.68	■■■□□ 2.02
HOMER3-208	ENST00000595756	STRCP1	A6NGW2	1772 aa		27.68	■■■□□ 2.02
HOMER3-208	ENST00000595756	UNC13B	O14795	1591 aa		27.67	■■■□□ 2.02
HOMER3-208	ENST00000595756	TET3	O43151	1660 aa		27.66	■■■□□ 2.02
HOMER3-208	ENST00000595756	NOS1	P29475	1434 aa		27.66	■■■□□ 2.02
HOMER3-208	ENST00000595756	RPRD2	Q5VT52	1461 aa	Known RBP	27.65	■■■□□ 2.02
HOMER3-208	ENST00000595756	GCC2	Q8IWJ2	1684 aa		27.64	■■■□□ 2.02
HOMER3-208	ENST00000595756	ADGRB3	O60242	1522 aa		27.63	■■■□□ 2.01
HOMER3-208	ENST00000595756	ROCK1	Q13464	1354 aa		27.6	■■■□□ 2.01
HOMER3-208	ENST00000595756	TMEM2	Q9UHN6	1383 aa		27.6	■■■□□ 2.01
HOMER3-208	ENST00000595756	LRRC7	Q96NW7	1537 aa		27.57	■■■□□ 2
HOMER3-208	ENST00000595756	LTK	P29376	864 aa		27.56	■■■□□ 2
HOMER3-208	ENST00000595756	ALK	Q9UM73	1620 aa		27.56	■■■□□ 2
HOMER3-208	ENST00000595756	DISP3	Q9P2K9	1392 aa		27.55	■■■□□ 2
HOMER3-208	ENST00000595756	IQGAP3	Q86VI3	1631 aa		27.55	■■■□□ 2
HOMER3-208	ENST00000595756	TXNDC2	Q86VQ3	553 aa		27.54	■■■□□ 2
HOMER3-208	ENST00000595756	EID1	Q9Y6B2	187 aa		27.54	■■■□□ 2
HOMER3-208	ENST00000595756	TOM1	O60784	492 aa		27.53	■■■□□ 2
HOMER3-208	ENST00000595756	IDI1	Q13907	227 aa		27.53	■■■□□ 2
HOMER3-208	ENST00000595756	STAG3	Q9UJ98	1225 aa		27.52	■■■□□ 2
HOMER3-208	ENST00000595756	SLC52A1	Q9NWF4	448 aa		27.51	■■□□□ 1.99
HOMER3-208	ENST00000595756		E9PCH4	1651 aa		27.51	■■□□□ 1.99
HOMER3-208	ENST00000595756	MYO5B	Q9ULV0	1848 aa		27.49	■■□□□ 1.99
HOMER3-208	ENST00000595756	XIRP1	Q702N8	1843 aa	Known RBP	27.48	■■□□□ 1.99
HOMER3-208	ENST00000595756	TMEM131L	A2VDJ0	1609 aa		27.45	■■□□□ 1.99
HOMER3-208	ENST00000595756	SCAF1	Q9H7N4	1312 aa	Known RBP	27.44	■■□□□ 1.98
HOMER3-208	ENST00000595756	PIP4K2B	P78356	416 aa		27.43	■■□□□ 1.98
HOMER3-208	ENST00000595756	NWD1	Q149M9	1564 aa		27.43	■■□□□ 1.98
HOMER3-208	ENST00000595756	ZFYVE9	O95405	1425 aa		27.41	■■□□□ 1.98
HOMER3-208	ENST00000595756	RRBP1	Q9P2E9	1410 aa	Known RBP	27.39	■■□□□ 1.97
HOMER3-208	ENST00000595756	HSPA1L	P34931	641 aa		27.38	■■□□□ 1.97
HOMER3-208	ENST00000595756	NKTR	P30414	1462 aa	Known RBP	27.37	■■□□□ 1.97
HOMER3-208	ENST00000595756	PPARGC1B	Q86YN6	1023 aa	Known RBP	27.35	■■□□□ 1.97

Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms