RNA–Protein interactions for RNA: ENST00000595756.1

HOMER3-208, Transcript of homer scaffold protein 3, humanhuman

TSL 2

Gene HOMER3, Length 570 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-208ENST00000595756 NISCHQ9Y2I1 1504 aa44.79■■■■■ 4.76
HOMER3-208ENST00000595756 CCDC180Q9P1Z9 1646 aa40.25■■■■■ 4.03
HOMER3-208ENST00000595756 ABCC9O60706 1549 aa39.81■■■■□ 3.96
HOMER3-208ENST00000595756 RB1CC1Q8TDY2 1594 aa38.11■■■■□ 3.69
HOMER3-208ENST00000595756 NACADO15069 1562 aa37.91■■■■□ 3.66
HOMER3-208ENST00000595756 MYO15BQ96JP2 1530 aa37.51■■■■□ 3.6
HOMER3-208ENST00000595756 DCAF8L2P0C7V8 631 aa37.42■■■■□ 3.58
HOMER3-208ENST00000595756 UNC13AQ9UPW8 1703 aa37.3■■■■□ 3.56
HOMER3-208ENST00000595756 ZCCHC6Q5VYS8 1495 aaKnown RBP37.22■■■■□ 3.55
HOMER3-208ENST00000595756 DCAF1Q9Y4B6 1507 aa37.1■■■■□ 3.53
HOMER3-208ENST00000595756 DNAJC5BQ9UF47 199 aa37.02■■■■□ 3.52
HOMER3-208ENST00000595756 BICRAQ9NZM4 1560 aa36.98■■■■□ 3.51
HOMER3-208ENST00000595756 PABPN1Q86U42 306 aaKnown RBP eCLIP36.97■■■■□ 3.51
HOMER3-208ENST00000595756 SHROOM4Q9ULL8 1493 aa36.62■■■■□ 3.45
HOMER3-208ENST00000595756 SCRIBQ14160 1630 aa36.56■■■■□ 3.44
HOMER3-208ENST00000595756 EIF4G1Q04637 1599 aaKnown RBP36.06■■■■□ 3.36
HOMER3-208ENST00000595756 CC2D2AQ9P2K1 1620 aa36.06■■■■□ 3.36
HOMER3-208ENST00000595756 CECR2Q9BXF3 1484 aa35.87■■■■□ 3.33
HOMER3-208ENST00000595756 NCAPD3P42695 1498 aa34.94■■■■□ 3.18
HOMER3-208ENST00000595756 SMARCA4P51532 1647 aa34.94■■■■□ 3.18
HOMER3-208ENST00000595756 ATAD2BQ9ULI0 1458 aa34.85■■■■□ 3.17
HOMER3-208ENST00000595756 SMARCA2P51531 1590 aa34.83■■■■□ 3.17
HOMER3-208ENST00000595756 HMGXB3Q12766 1538 aa34.8■■■■□ 3.16
HOMER3-208ENST00000595756 BAZ1AQ9NRL2 1556 aaPredicted RBP34.79■■■■□ 3.16
HOMER3-208ENST00000595756 PEG3Q9GZU2 1588 aa34.65■■■■□ 3.14
HOMER3-208ENST00000595756 BAZ1BQ9UIG0 1483 aaKnown RBP34.54■■■■□ 3.12
HOMER3-208ENST00000595756 MROH2BQ7Z745 1585 aa34.48■■■■□ 3.11
HOMER3-208ENST00000595756 ERCC6Q03468 1493 aa34.39■■■■□ 3.1
HOMER3-208ENST00000595756 CUX2O14529 1486 aa34.33■■■■□ 3.09
HOMER3-208ENST00000595756 NESP48681 1621 aa34.26■■■■□ 3.08
HOMER3-208ENST00000595756 LAMC3Q9Y6N6 1575 aa34.19■■■■□ 3.06
HOMER3-208ENST00000595756 WIZO95785 1651 aa34.1■■■■□ 3.05
HOMER3-208ENST00000595756 THOC2Q8NI27 1593 aaKnown RBP34.02■■■■□ 3.04
HOMER3-208ENST00000595756 KIF21AQ7Z4S6 1674 aa33.96■■■■□ 3.03
HOMER3-208ENST00000595756 PDS5BQ9NTI5 1447 aa33.89■■■■□ 3.02
HOMER3-208ENST00000595756 DNAJC5Q9H3Z4 198 aa33.89■■■■□ 3.02
HOMER3-208ENST00000595756 CADPSQ9ULU8 1353 aa33.84■■■■□ 3.01
HOMER3-208ENST00000595756 RSF1Q96T23 1441 aaPredicted RBP33.82■■■■□ 3
HOMER3-208ENST00000595756 TOP2AP11388 1531 aaKnown RBP33.74■■■□□ 2.99
HOMER3-208ENST00000595756 MRC2Q9UBG0 1479 aa33.63■■■□□ 2.97
HOMER3-208ENST00000595756 WDR62O43379 1518 aa33.59■■■□□ 2.97
HOMER3-208ENST00000595756 CFTRP13569 1480 aa33.56■■■□□ 2.96
HOMER3-208ENST00000595756 CEP164Q9UPV0 1460 aa33.54■■■□□ 2.96
HOMER3-208ENST00000595756 FANCD2Q9BXW9 1451 aa33.49■■■□□ 2.95
HOMER3-208ENST00000595756 PRDM2Q13029 1718 aa33.41■■■□□ 2.94
HOMER3-208ENST00000595756 CCDC88BA6NC98 1476 aa33.25■■■□□ 2.91
HOMER3-208ENST00000595756 URB2Q14146 1524 aaKnown RBP33.21■■■□□ 2.91
HOMER3-208ENST00000595756 TOPBP1Q92547 1522 aa32.89■■■□□ 2.86
HOMER3-208ENST00000595756 ABCC8Q09428 1581 aa32.87■■■□□ 2.85
HOMER3-208ENST00000595756 IFT140Q96RY7 1462 aa32.86■■■□□ 2.85
HOMER3-208ENST00000595756 DNMBPQ6XZF7 1577 aa32.85■■■□□ 2.85
HOMER3-208ENST00000595756 ZNF608Q9ULD9 1512 aaPredicted RBP32.72■■■□□ 2.83
HOMER3-208ENST00000595756 EIF4G3O43432 1585 aaKnown RBP32.67■■■□□ 2.82
HOMER3-208ENST00000595756 TARBP1Q13395 1621 aaKnown RBP32.63■■■□□ 2.81
HOMER3-208ENST00000595756 OSCARQ8IYS5 282 aa32.62■■■□□ 2.81
HOMER3-208ENST00000595756 POLA1P09884 1462 aaPredicted RBP32.57■■■□□ 2.8
HOMER3-208ENST00000595756 TRIM41Q8WV44 630 aa32.43■■■□□ 2.78
HOMER3-208ENST00000595756 WDR97A6NE52 1622 aa32.42■■■□□ 2.78
HOMER3-208ENST00000595756 AQRO60306 1485 aaKnown RBP eCLIP32.42■■■□□ 2.78
HOMER3-208ENST00000595756 CUX1P39880 1505 aa32.41■■■□□ 2.78
HOMER3-208ENST00000595756 FGD5Q6ZNL6 1462 aa32.39■■■□□ 2.78
HOMER3-208ENST00000595756 CHD1O14646 1710 aa32.38■■■□□ 2.77
HOMER3-208ENST00000595756 RAD54L2Q9Y4B4 1467 aa32.38■■■□□ 2.77
HOMER3-208ENST00000595756 SOGA1O94964 1423 aa32.34■■■□□ 2.77
HOMER3-208ENST00000595756 RIMBP3CA6NJZ7 1639 aa32.33■■■□□ 2.77
HOMER3-208ENST00000595756 RIMBP3BA6NNM3 1639 aa32.33■■■□□ 2.77
HOMER3-208ENST00000595756 RIMBP3Q9UFD9 1639 aa32.33■■■□□ 2.77
HOMER3-208ENST00000595756 SUPT5HO00267 1087 aaKnown RBP32.3■■■□□ 2.76
HOMER3-208ENST00000595756 ARHGEF11O15085 1522 aa32.24■■■□□ 2.75
HOMER3-208ENST00000595756 TDRD9Q8NDG6 1382 aaKnown RBP32.22■■■□□ 2.75
HOMER3-208ENST00000595756 SNAPC4Q5SXM2 1469 aa32.17■■■□□ 2.74
HOMER3-208ENST00000595756 MAGI1Q96QZ7 1491 aaPredicted RBP32.14■■■□□ 2.74
HOMER3-208ENST00000595756 PBRM1Q86U86 1689 aa32.11■■■□□ 2.73
HOMER3-208ENST00000595756 GRIN2BQ13224 1484 aa32.11■■■□□ 2.73
HOMER3-208ENST00000595756 ABCA10Q8WWZ4 1543 aa32.07■■■□□ 2.72
HOMER3-208ENST00000595756 ABCA5Q8WWZ7 1642 aa32.06■■■□□ 2.72
HOMER3-208ENST00000595756 FBLN2P98095 1184 aa32.05■■■□□ 2.72
HOMER3-208ENST00000595756 BIVM-ERCC5R4GMW8 1640 aa32.04■■■□□ 2.72
HOMER3-208ENST00000595756 CLASP1Q7Z460 1538 aa32.02■■■□□ 2.72
HOMER3-208ENST00000595756 GAPVD1Q14C86 1478 aa32.02■■■□□ 2.72
HOMER3-208ENST00000595756 SYNJ2O15056 1496 aa32.01■■■□□ 2.71
HOMER3-208ENST00000595756 SYNJ1O43426 1573 aa32.01■■■□□ 2.71
HOMER3-208ENST00000595756 TOP2BQ02880 1626 aa32■■■□□ 2.71
HOMER3-208ENST00000595756 ARAP1Q96P48 1450 aa31.93■■■□□ 2.7
HOMER3-208ENST00000595756 WRNQ14191 1432 aaPredicted RBP eCLIP31.92■■■□□ 2.7
HOMER3-208ENST00000595756 CHMP7Q8WUX9 453 aaPredicted RBP31.91■■■□□ 2.7
HOMER3-208ENST00000595756 CYB5RLQ6IPT4 315 aa31.8■■■□□ 2.68
HOMER3-208ENST00000595756 ADAMTS12P58397 1594 aa31.8■■■□□ 2.68
HOMER3-208ENST00000595756 GRIN2AQ12879 1464 aa31.72■■■□□ 2.67
HOMER3-208ENST00000595756 ERICH3Q5RHP9 1530 aa31.7■■■□□ 2.67
HOMER3-208ENST00000595756 FHAD1B1AJZ9 1412 aa31.63■■■□□ 2.65
HOMER3-208ENST00000595756 CEP170Q5SW79 1584 aa31.61■■■□□ 2.65
HOMER3-208ENST00000595756 NUP160Q12769 1436 aa31.61■■■□□ 2.65
HOMER3-208ENST00000595756 SHROOM2Q13796 1616 aa31.52■■■□□ 2.64
HOMER3-208ENST00000595756 ERCC6L2Q5T890 1561 aa31.45■■■□□ 2.63
HOMER3-208ENST00000595756 TRHP20396 242 aaPredicted RBP31.37■■■□□ 2.61
HOMER3-208ENST00000595756 RUSC2Q8N2Y8 1516 aa31.36■■■□□ 2.61
HOMER3-208ENST00000595756 CUL7Q14999 1698 aa31.33■■■□□ 2.61
HOMER3-208ENST00000595756 KIF27Q86VH2 1401 aa31.3■■■□□ 2.6
HOMER3-208ENST00000595756 PRG4Q92954 1404 aaPredicted RBP31.21■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms