RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 KDM5DQ9BY66 1539 aa27.86■■■□□ 2.05
SHKBP1-203ENST00000594298 LRRC9Q6ZRR7 1453 aa27.85■■■□□ 2.05
SHKBP1-203ENST00000594298 PZPP20742 1482 aa27.83■■■□□ 2.05
SHKBP1-203ENST00000594298 TSPY4P0CV99 314 aa27.83■■■□□ 2.05
SHKBP1-203ENST00000594298 TSPY10P0CW01 314 aa27.83■■■□□ 2.05
SHKBP1-203ENST00000594298 ZNF335Q9H4Z2 1342 aaPredicted RBP27.83■■■□□ 2.05
SHKBP1-203ENST00000594298 TNRQ92752 1358 aa27.81■■■□□ 2.04
SHKBP1-203ENST00000594298 DNMT1P26358 1616 aaKnown RBP27.81■■■□□ 2.04
SHKBP1-203ENST00000594298 WASHC2CQ9Y4E1 1318 aa27.8■■■□□ 2.04
SHKBP1-203ENST00000594298 MAP3K1Q13233 1512 aa27.79■■■□□ 2.04
SHKBP1-203ENST00000594298 FBXO31Q5XUX0 539 aaPredicted RBP27.79■■■□□ 2.04
SHKBP1-203ENST00000594298 LOC105371045A0A1W2PR82 267 aa27.78■■■□□ 2.04
SHKBP1-203ENST00000594298 MAST1Q9Y2H9 1570 aa27.74■■■□□ 2.03
SHKBP1-203ENST00000594298 MIA2Q96PC5 1412 aa27.73■■■□□ 2.03
SHKBP1-203ENST00000594298 DISP3Q9P2K9 1392 aa27.73■■■□□ 2.03
SHKBP1-203ENST00000594298 KANK4Q5T7N3 995 aaPredicted RBP27.72■■■□□ 2.03
SHKBP1-203ENST00000594298 NLRP1Q9C000 1473 aa27.71■■■□□ 2.03
SHKBP1-203ENST00000594298 MYOM3Q5VTT5 1437 aa27.69■■■□□ 2.02
SHKBP1-203ENST00000594298 RNF17Q9BXT8 1623 aaKnown RBP27.69■■■□□ 2.02
SHKBP1-203ENST00000594298 THEMISQ8N1K5 641 aaPredicted RBP27.67■■■□□ 2.02
SHKBP1-203ENST00000594298 NEURL4Q96JN8 1562 aa27.67■■■□□ 2.02
SHKBP1-203ENST00000594298 UBAP1LF5GYI3 381 aa27.66■■■□□ 2.02
SHKBP1-203ENST00000594298 EIF2AK4Q9P2K8 1649 aaKnown RBP27.65■■■□□ 2.02
SHKBP1-203ENST00000594298 ABCC3O15438 1527 aa27.65■■■□□ 2.02
SHKBP1-203ENST00000594298 POLR1AO95602 1720 aaPredicted RBP27.64■■■□□ 2.02
SHKBP1-203ENST00000594298 ANKLE2Q86XL3 938 aa27.64■■■□□ 2.02
SHKBP1-203ENST00000594298 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.63■■■□□ 2.01
SHKBP1-203ENST00000594298 UGGT1Q9NYU2 1555 aa27.63■■■□□ 2.01
SHKBP1-203ENST00000594298 ZC3H13Q5T200 1668 aaKnown RBP27.62■■■□□ 2.01
SHKBP1-203ENST00000594298 CPS1P31327 1500 aa27.61■■■□□ 2.01
SHKBP1-203ENST00000594298 SPATA31D1Q6ZQQ2 1576 aa27.6■■■□□ 2.01
SHKBP1-203ENST00000594298 MED14O60244 1454 aa27.6■■■□□ 2.01
SHKBP1-203ENST00000594298 ILDR2Q71H61 639 aa27.6■■■□□ 2.01
SHKBP1-203ENST00000594298 SHANK2Q9UPX8 1470 aa27.59■■■□□ 2.01
SHKBP1-203ENST00000594298 MROH1Q8NDA8 1641 aa27.59■■■□□ 2.01
SHKBP1-203ENST00000594298 DUOX2Q9NRD8 1548 aa27.57■■■□□ 2
SHKBP1-203ENST00000594298 DEPDC5O75140 1603 aa27.57■■■□□ 2
SHKBP1-203ENST00000594298 ERVK-7P63135 1459 aa27.57■■■□□ 2
SHKBP1-203ENST00000594298 NPHP4O75161 1426 aaPredicted RBP27.56■■■□□ 2
SHKBP1-203ENST00000594298 VWDEQ8N2E2 1590 aa27.53■■■□□ 2
SHKBP1-203ENST00000594298 ABCC5O15440 1437 aa27.52■■■□□ 2
SHKBP1-203ENST00000594298 KIF15Q9NS87 1388 aa27.51■■□□□ 1.99
SHKBP1-203ENST00000594298 ERBINQ96RT1 1412 aa27.5■■□□□ 1.99
SHKBP1-203ENST00000594298 SOCS7O14512 581 aa27.49■■□□□ 1.99
SHKBP1-203ENST00000594298 TOM1O60784 492 aa27.49■■□□□ 1.99
SHKBP1-203ENST00000594298 APLP2Q06481 763 aa27.49■■□□□ 1.99
SHKBP1-203ENST00000594298 ARHGAP31Q2M1Z3 1444 aa27.49■■□□□ 1.99
SHKBP1-203ENST00000594298 PRDM15P57071 1507 aaPredicted RBP27.48■■□□□ 1.99
SHKBP1-203ENST00000594298 PTPN23Q9H3S7 1636 aa27.47■■□□□ 1.99
SHKBP1-203ENST00000594298 CROCC2H7BZ55 1655 aa27.46■■□□□ 1.99
SHKBP1-203ENST00000594298 IQGAP1P46940 1657 aa27.46■■□□□ 1.99
SHKBP1-203ENST00000594298 DAPK1P53355 1430 aa27.45■■□□□ 1.98
SHKBP1-203ENST00000594298 RRP7BPQ9NSQ0 103 aa27.45■■□□□ 1.98
SHKBP1-203ENST00000594298 CEP152O94986 1710 aa27.44■■□□□ 1.98
SHKBP1-203ENST00000594298 FGD6Q6ZV73 1430 aa27.42■■□□□ 1.98
SHKBP1-203ENST00000594298 PIP4K2BP78356 416 aa27.4■■□□□ 1.98
SHKBP1-203ENST00000594298 UBR1Q8IWV7 1749 aa27.4■■□□□ 1.98
SHKBP1-203ENST00000594298 HSPA1LP34931 641 aa27.39■■□□□ 1.98
SHKBP1-203ENST00000594298 SCAF1Q9H7N4 1312 aaKnown RBP27.39■■□□□ 1.97
SHKBP1-203ENST00000594298 SCAF11Q99590 1463 aaKnown RBP27.38■■□□□ 1.97
SHKBP1-203ENST00000594298 ARHGAP23Q9P227 1491 aa27.38■■□□□ 1.97
SHKBP1-203ENST00000594298 SLIT1O75093 1534 aa27.37■■□□□ 1.97
SHKBP1-203ENST00000594298 KANK1Q14678 1352 aa27.35■■□□□ 1.97
SHKBP1-203ENST00000594298 ANKRD30AQ9BXX3 1397 aa27.35■■□□□ 1.97
SHKBP1-203ENST00000594298 LRRC7Q96NW7 1537 aa27.35■■□□□ 1.97
SHKBP1-203ENST00000594298 ALKQ9UM73 1620 aa27.34■■□□□ 1.97
SHKBP1-203ENST00000594298 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.34■■□□□ 1.97
SHKBP1-203ENST00000594298 LMTK2Q8IWU2 1503 aa27.33■■□□□ 1.97
SHKBP1-203ENST00000594298 LTKP29376 864 aa27.33■■□□□ 1.97
SHKBP1-203ENST00000594298 SYNMO15061 1565 aa27.32■■□□□ 1.96
SHKBP1-203ENST00000594298 TXNDC2Q86VQ3 553 aa27.32■■□□□ 1.96
SHKBP1-203ENST00000594298 STRCP1A6NGW2 1772 aa27.31■■□□□ 1.96
SHKBP1-203ENST00000594298 CHIC2Q9UKJ5 165 aa27.29■■□□□ 1.96
SHKBP1-203ENST00000594298 TMEM2Q9UHN6 1383 aa27.28■■□□□ 1.96
SHKBP1-203ENST00000594298 EID1Q9Y6B2 187 aa27.28■■□□□ 1.96
SHKBP1-203ENST00000594298 CFAP65Q6ZU64 1925 aaKnown RBP27.27■■□□□ 1.96
SHKBP1-203ENST00000594298 ADGRL2O95490 1459 aa27.26■■□□□ 1.95
SHKBP1-203ENST00000594298 PIK3C2BO00750 1634 aa27.26■■□□□ 1.95
SHKBP1-203ENST00000594298 MED1Q15648 1581 aaPredicted RBP27.24■■□□□ 1.95
SHKBP1-203ENST00000594298 KDM5AP29375 1690 aaKnown RBP27.24■■□□□ 1.95
SHKBP1-203ENST00000594298 IDI1Q13907 227 aa27.23■■□□□ 1.95
SHKBP1-203ENST00000594298 STAG3Q9UJ98 1225 aa27.22■■□□□ 1.95
SHKBP1-203ENST00000594298 NOS1P29475 1434 aa27.22■■□□□ 1.95
SHKBP1-203ENST00000594298 EFCAB6Q5THR3 1501 aa27.21■■□□□ 1.95
SHKBP1-203ENST00000594298 ANKRD50Q9ULJ7 1429 aa27.16■■□□□ 1.94
SHKBP1-203ENST00000594298 FAM50AQ14320 339 aaKnown RBP27.15■■□□□ 1.94
SHKBP1-203ENST00000594298 SLC52A1Q9NWF4 448 aa27.15■■□□□ 1.94
SHKBP1-203ENST00000594298 RPRD2Q5VT52 1461 aaKnown RBP27.14■■□□□ 1.94
SHKBP1-203ENST00000594298 ADGRB3O60242 1522 aa27.13■■□□□ 1.93
SHKBP1-203ENST00000594298 TET3O43151 1660 aa27.11■■□□□ 1.93
SHKBP1-203ENST00000594298 KCNA6P17658 529 aa27.1■■□□□ 1.93
SHKBP1-203ENST00000594298 XIRP1Q702N8 1843 aaKnown RBP27.07■■□□□ 1.92
SHKBP1-203ENST00000594298 SLC26A8Q96RN1 970 aa27.06■■□□□ 1.92
SHKBP1-203ENST00000594298 TMEM94Q12767 1356 aa27.06■■□□□ 1.92
SHKBP1-203ENST00000594298 FAM135BQ49AJ0 1406 aa27.05■■□□□ 1.92
SHKBP1-203ENST00000594298 PHF23Q9BUL5 403 aaPredicted RBP27.04■■□□□ 1.92
SHKBP1-203ENST00000594298 SENP3Q9H4L4 574 aaPredicted RBP27.03■■□□□ 1.92
SHKBP1-203ENST00000594298 NKTRP30414 1462 aaKnown RBP27.01■■□□□ 1.91
SHKBP1-203ENST00000594298 ZFYVE9O95405 1425 aa27.01■■□□□ 1.91
SHKBP1-203ENST00000594298 ROCK1Q13464 1354 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms