RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 NISCHQ9Y2I1 1504 aa44.05■■■■■ 4.64
SHKBP1-203ENST00000594298 ABCC9O60706 1549 aa39.56■■■■□ 3.92
SHKBP1-203ENST00000594298 CCDC180Q9P1Z9 1646 aa39.52■■■■□ 3.92
SHKBP1-203ENST00000594298 RB1CC1Q8TDY2 1594 aa37.67■■■■□ 3.62
SHKBP1-203ENST00000594298 NACADO15069 1562 aa37.42■■■■□ 3.58
SHKBP1-203ENST00000594298 DNAJC5BQ9UF47 199 aa37.2■■■■□ 3.55
SHKBP1-203ENST00000594298 DCAF8L2P0C7V8 631 aa37.11■■■■□ 3.53
SHKBP1-203ENST00000594298 MYO15BQ96JP2 1530 aa36.95■■■■□ 3.51
SHKBP1-203ENST00000594298 PABPN1Q86U42 306 aaKnown RBP eCLIP36.83■■■■□ 3.49
SHKBP1-203ENST00000594298 UNC13AQ9UPW8 1703 aa36.71■■■■□ 3.47
SHKBP1-203ENST00000594298 BICRAQ9NZM4 1560 aa36.57■■■■□ 3.44
SHKBP1-203ENST00000594298 ZCCHC6Q5VYS8 1495 aaKnown RBP36.5■■■■□ 3.43
SHKBP1-203ENST00000594298 DCAF1Q9Y4B6 1507 aa36.44■■■■□ 3.42
SHKBP1-203ENST00000594298 SHROOM4Q9ULL8 1493 aa36.17■■■■□ 3.38
SHKBP1-203ENST00000594298 SCRIBQ14160 1630 aa35.96■■■■□ 3.35
SHKBP1-203ENST00000594298 CC2D2AQ9P2K1 1620 aa35.75■■■■□ 3.31
SHKBP1-203ENST00000594298 CECR2Q9BXF3 1484 aa35.68■■■■□ 3.3
SHKBP1-203ENST00000594298 EIF4G1Q04637 1599 aaKnown RBP35.68■■■■□ 3.3
SHKBP1-203ENST00000594298 NCAPD3P42695 1498 aa34.58■■■■□ 3.13
SHKBP1-203ENST00000594298 ATAD2BQ9ULI0 1458 aa34.44■■■■□ 3.1
SHKBP1-203ENST00000594298 SMARCA4P51532 1647 aa34.33■■■■□ 3.09
SHKBP1-203ENST00000594298 SMARCA2P51531 1590 aa34.32■■■■□ 3.09
SHKBP1-203ENST00000594298 HMGXB3Q12766 1538 aa34.29■■■■□ 3.08
SHKBP1-203ENST00000594298 DNAJC5Q9H3Z4 198 aa34.24■■■■□ 3.07
SHKBP1-203ENST00000594298 CUX2O14529 1486 aa34.2■■■■□ 3.06
SHKBP1-203ENST00000594298 BAZ1AQ9NRL2 1556 aaPredicted RBP34.19■■■■□ 3.06
SHKBP1-203ENST00000594298 ERCC6Q03468 1493 aa34.17■■■■□ 3.06
SHKBP1-203ENST00000594298 PEG3Q9GZU2 1588 aa34.07■■■■□ 3.05
SHKBP1-203ENST00000594298 BAZ1BQ9UIG0 1483 aaKnown RBP34.07■■■■□ 3.04
SHKBP1-203ENST00000594298 NESP48681 1621 aa33.97■■■■□ 3.03
SHKBP1-203ENST00000594298 MROH2BQ7Z745 1585 aa33.91■■■■□ 3.02
SHKBP1-203ENST00000594298 LAMC3Q9Y6N6 1575 aa33.77■■■■□ 3
SHKBP1-203ENST00000594298 THOC2Q8NI27 1593 aaKnown RBP33.65■■■□□ 2.98
SHKBP1-203ENST00000594298 PDS5BQ9NTI5 1447 aa33.6■■■□□ 2.97
SHKBP1-203ENST00000594298 CADPSQ9ULU8 1353 aa33.51■■■□□ 2.96
SHKBP1-203ENST00000594298 KIF21AQ7Z4S6 1674 aa33.47■■■□□ 2.95
SHKBP1-203ENST00000594298 WIZO95785 1651 aa33.45■■■□□ 2.95
SHKBP1-203ENST00000594298 MRC2Q9UBG0 1479 aa33.29■■■□□ 2.92
SHKBP1-203ENST00000594298 RSF1Q96T23 1441 aaPredicted RBP33.22■■■□□ 2.91
SHKBP1-203ENST00000594298 WDR62O43379 1518 aa33.22■■■□□ 2.91
SHKBP1-203ENST00000594298 CEP164Q9UPV0 1460 aa33.13■■■□□ 2.89
SHKBP1-203ENST00000594298 CFTRP13569 1480 aa33.12■■■□□ 2.89
SHKBP1-203ENST00000594298 FANCD2Q9BXW9 1451 aa33.1■■■□□ 2.89
SHKBP1-203ENST00000594298 TOP2AP11388 1531 aaKnown RBP33.09■■■□□ 2.89
SHKBP1-203ENST00000594298 URB2Q14146 1524 aaKnown RBP32.82■■■□□ 2.85
SHKBP1-203ENST00000594298 CCDC88BA6NC98 1476 aa32.72■■■□□ 2.83
SHKBP1-203ENST00000594298 PRDM2Q13029 1718 aa32.65■■■□□ 2.82
SHKBP1-203ENST00000594298 TRIM41Q8WV44 630 aa32.62■■■□□ 2.81
SHKBP1-203ENST00000594298 OSCARQ8IYS5 282 aa32.61■■■□□ 2.81
SHKBP1-203ENST00000594298 IFT140Q96RY7 1462 aa32.5■■■□□ 2.79
SHKBP1-203ENST00000594298 TOPBP1Q92547 1522 aa32.46■■■□□ 2.79
SHKBP1-203ENST00000594298 ABCC8Q09428 1581 aa32.43■■■□□ 2.78
SHKBP1-203ENST00000594298 ZNF608Q9ULD9 1512 aaPredicted RBP32.41■■■□□ 2.78
SHKBP1-203ENST00000594298 DNMBPQ6XZF7 1577 aa32.32■■■□□ 2.77
SHKBP1-203ENST00000594298 EIF4G3O43432 1585 aaKnown RBP32.21■■■□□ 2.75
SHKBP1-203ENST00000594298 TARBP1Q13395 1621 aaKnown RBP32.16■■■□□ 2.74
SHKBP1-203ENST00000594298 RIMBP3CA6NJZ7 1639 aa32.13■■■□□ 2.73
SHKBP1-203ENST00000594298 RIMBP3BA6NNM3 1639 aa32.13■■■□□ 2.73
SHKBP1-203ENST00000594298 POLA1P09884 1462 aaPredicted RBP32.13■■■□□ 2.73
SHKBP1-203ENST00000594298 RIMBP3Q9UFD9 1639 aa32.13■■■□□ 2.73
SHKBP1-203ENST00000594298 AQRO60306 1485 aaKnown RBP eCLIP32.11■■■□□ 2.73
SHKBP1-203ENST00000594298 ARHGEF11O15085 1522 aa32.06■■■□□ 2.72
SHKBP1-203ENST00000594298 SOGA1O94964 1423 aa31.99■■■□□ 2.71
SHKBP1-203ENST00000594298 RAD54L2Q9Y4B4 1467 aa31.98■■■□□ 2.71
SHKBP1-203ENST00000594298 CHD1O14646 1710 aa31.93■■■□□ 2.7
SHKBP1-203ENST00000594298 TDRD9Q8NDG6 1382 aaKnown RBP31.91■■■□□ 2.7
SHKBP1-203ENST00000594298 FGD5Q6ZNL6 1462 aa31.91■■■□□ 2.7
SHKBP1-203ENST00000594298 WDR97A6NE52 1622 aa31.89■■■□□ 2.7
SHKBP1-203ENST00000594298 FBLN2P98095 1184 aa31.88■■■□□ 2.69
SHKBP1-203ENST00000594298 CUX1P39880 1505 aa31.87■■■□□ 2.69
SHKBP1-203ENST00000594298 CYB5RLQ6IPT4 315 aa31.81■■■□□ 2.68
SHKBP1-203ENST00000594298 SNAPC4Q5SXM2 1469 aa31.79■■■□□ 2.68
SHKBP1-203ENST00000594298 ARAP1Q96P48 1450 aa31.74■■■□□ 2.67
SHKBP1-203ENST00000594298 MAGI1Q96QZ7 1491 aaPredicted RBP31.74■■■□□ 2.67
SHKBP1-203ENST00000594298 GRIN2BQ13224 1484 aa31.72■■■□□ 2.67
SHKBP1-203ENST00000594298 CHMP7Q8WUX9 453 aaPredicted RBP31.68■■■□□ 2.66
SHKBP1-203ENST00000594298 CLASP1Q7Z460 1538 aa31.66■■■□□ 2.66
SHKBP1-203ENST00000594298 SYNJ2O15056 1496 aa31.63■■■□□ 2.65
SHKBP1-203ENST00000594298 SYNJ1O43426 1573 aa31.62■■■□□ 2.65
SHKBP1-203ENST00000594298 SUPT5HO00267 1087 aaKnown RBP31.61■■■□□ 2.65
SHKBP1-203ENST00000594298 GAPVD1Q14C86 1478 aa31.59■■■□□ 2.65
SHKBP1-203ENST00000594298 ABCA10Q8WWZ4 1543 aa31.58■■■□□ 2.65
SHKBP1-203ENST00000594298 ABCA5Q8WWZ7 1642 aa31.5■■■□□ 2.63
SHKBP1-203ENST00000594298 PBRM1Q86U86 1689 aa31.5■■■□□ 2.63
SHKBP1-203ENST00000594298 TRHP20396 242 aaPredicted RBP31.45■■■□□ 2.63
SHKBP1-203ENST00000594298 WRNQ14191 1432 aaPredicted RBP eCLIP31.43■■■□□ 2.62
SHKBP1-203ENST00000594298 TOP2BQ02880 1626 aa31.34■■■□□ 2.61
SHKBP1-203ENST00000594298 BIVM-ERCC5R4GMW8 1640 aa31.33■■■□□ 2.61
SHKBP1-203ENST00000594298 GRIN2AQ12879 1464 aa31.31■■■□□ 2.6
SHKBP1-203ENST00000594298 ADAMTS12P58397 1594 aa31.26■■■□□ 2.6
SHKBP1-203ENST00000594298 NUP160Q12769 1436 aa31.24■■■□□ 2.59
SHKBP1-203ENST00000594298 FHAD1B1AJZ9 1412 aa31.22■■■□□ 2.59
SHKBP1-203ENST00000594298 ERICH3Q5RHP9 1530 aa31.18■■■□□ 2.58
SHKBP1-203ENST00000594298 CEP170Q5SW79 1584 aa31.17■■■□□ 2.58
SHKBP1-203ENST00000594298 ERCC6L2Q5T890 1561 aa31.12■■■□□ 2.57
SHKBP1-203ENST00000594298 SHROOM2Q13796 1616 aa31.06■■■□□ 2.56
SHKBP1-203ENST00000594298 PRG4Q92954 1404 aaPredicted RBP30.9■■■□□ 2.54
SHKBP1-203ENST00000594298 JPH4Q96JJ6 628 aa30.9■■■□□ 2.54
SHKBP1-203ENST00000594298 RUSC2Q8N2Y8 1516 aa30.82■■■□□ 2.52
SHKBP1-203ENST00000594298 IGF1RP08069 1367 aa30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms