RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 PKD2Q13563 968 aa23.48■■□□□ 1.35
PNKP-202ENST00000593706 DISP3Q9P2K9 1392 aa23.48■■□□□ 1.35
PNKP-202ENST00000593706 ZC3H13Q5T200 1668 aaKnown RBP23.48■■□□□ 1.35
PNKP-202ENST00000593706 KIF3BO15066 747 aa23.47■■□□□ 1.35
PNKP-202ENST00000593706 ZNF335Q9H4Z2 1342 aaPredicted RBP23.47■■□□□ 1.35
PNKP-202ENST00000593706 PZPP20742 1482 aa23.47■■□□□ 1.35
PNKP-202ENST00000593706 VPS8Q8N3P4 1428 aa23.46■■□□□ 1.35
PNKP-202ENST00000593706 RNF17Q9BXT8 1623 aaKnown RBP23.45■■□□□ 1.34
PNKP-202ENST00000593706 LRRC9Q6ZRR7 1453 aa23.45■■□□□ 1.34
PNKP-202ENST00000593706 RSPH4AQ5TD94 716 aa23.44■■□□□ 1.34
PNKP-202ENST00000593706 EIF2AK4Q9P2K8 1649 aaKnown RBP23.44■■□□□ 1.34
PNKP-202ENST00000593706 MAST1Q9Y2H9 1570 aa23.44■■□□□ 1.34
PNKP-202ENST00000593706 TNRQ92752 1358 aa23.43■■□□□ 1.34
PNKP-202ENST00000593706 NEURL4Q96JN8 1562 aa23.43■■□□□ 1.34
PNKP-202ENST00000593706 CFAP65Q6ZU64 1925 aaKnown RBP23.43■■□□□ 1.34
PNKP-202ENST00000593706 CEP152O94986 1710 aa23.42■■□□□ 1.34
PNKP-202ENST00000593706 WASHC2CQ9Y4E1 1318 aa23.41■■□□□ 1.34
PNKP-202ENST00000593706 TSPY4P0CV99 314 aa23.39■■□□□ 1.33
PNKP-202ENST00000593706 TSPY10P0CW01 314 aa23.39■■□□□ 1.33
PNKP-202ENST00000593706 CROCC2H7BZ55 1655 aa23.38■■□□□ 1.33
PNKP-202ENST00000593706 FBXO31Q5XUX0 539 aaPredicted RBP23.38■■□□□ 1.33
PNKP-202ENST00000593706 UGGT1Q9NYU2 1555 aa23.37■■□□□ 1.33
PNKP-202ENST00000593706 NLRP1Q9C000 1473 aa23.36■■□□□ 1.33
PNKP-202ENST00000593706 MAP3K1Q13233 1512 aa23.35■■□□□ 1.33
PNKP-202ENST00000593706 UBAP1LF5GYI3 381 aa23.35■■□□□ 1.33
PNKP-202ENST00000593706 IQGAP1P46940 1657 aa23.35■■□□□ 1.33
PNKP-202ENST00000593706 ABCC3O15438 1527 aa23.34■■□□□ 1.33
PNKP-202ENST00000593706 DEPDC5O75140 1603 aa23.34■■□□□ 1.33
PNKP-202ENST00000593706 MROH1Q8NDA8 1641 aa23.33■■□□□ 1.32
PNKP-202ENST00000593706 CPS1P31327 1500 aa23.33■■□□□ 1.32
PNKP-202ENST00000593706 MYOM3Q5VTT5 1437 aa23.33■■□□□ 1.32
PNKP-202ENST00000593706 LOC105371045A0A1W2PR82 267 aa23.32■■□□□ 1.32
PNKP-202ENST00000593706 MIA2Q96PC5 1412 aa23.31■■□□□ 1.32
PNKP-202ENST00000593706 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.3■■□□□ 1.32
PNKP-202ENST00000593706 ILDR2Q71H61 639 aa23.29■■□□□ 1.32
PNKP-202ENST00000593706 SHANK2Q9UPX8 1470 aa23.28■■□□□ 1.32
PNKP-202ENST00000593706 DUOX2Q9NRD8 1548 aa23.28■■□□□ 1.32
PNKP-202ENST00000593706 UBR1Q8IWV7 1749 aa23.28■■□□□ 1.32
PNKP-202ENST00000593706 VWDEQ8N2E2 1590 aa23.27■■□□□ 1.32
PNKP-202ENST00000593706 PTPN23Q9H3S7 1636 aa23.26■■□□□ 1.31
PNKP-202ENST00000593706 ANKLE2Q86XL3 938 aa23.26■■□□□ 1.31
PNKP-202ENST00000593706 THEMISQ8N1K5 641 aaPredicted RBP23.26■■□□□ 1.31
PNKP-202ENST00000593706 ERVK-7P63135 1459 aa23.25■■□□□ 1.31
PNKP-202ENST00000593706 KANK4Q5T7N3 995 aaPredicted RBP23.25■■□□□ 1.31
PNKP-202ENST00000593706 NPHP4O75161 1426 aaPredicted RBP23.24■■□□□ 1.31
PNKP-202ENST00000593706 MED14O60244 1454 aa23.24■■□□□ 1.31
PNKP-202ENST00000593706 PRDM15P57071 1507 aaPredicted RBP23.23■■□□□ 1.31
PNKP-202ENST00000593706 STRCP1A6NGW2 1772 aa23.23■■□□□ 1.31
PNKP-202ENST00000593706 SCAF1Q9H7N4 1312 aaKnown RBP23.23■■□□□ 1.31
PNKP-202ENST00000593706 SYNMO15061 1565 aa23.21■■□□□ 1.31
PNKP-202ENST00000593706 SOCS7O14512 581 aa23.19■■□□□ 1.3
PNKP-202ENST00000593706 KIF15Q9NS87 1388 aa23.17■■□□□ 1.3
PNKP-202ENST00000593706 PIP4K2BP78356 416 aa23.17■■□□□ 1.3
PNKP-202ENST00000593706 ERBINQ96RT1 1412 aa23.16■■□□□ 1.3
PNKP-202ENST00000593706 TOM1O60784 492 aa23.15■■□□□ 1.3
PNKP-202ENST00000593706 APLP2Q06481 763 aa23.15■■□□□ 1.3
PNKP-202ENST00000593706 PIK3C2BO00750 1634 aa23.14■■□□□ 1.29
PNKP-202ENST00000593706 ABCC5O15440 1437 aa23.13■■□□□ 1.29
PNKP-202ENST00000593706 MED1Q15648 1581 aaPredicted RBP23.13■■□□□ 1.29
PNKP-202ENST00000593706 DAPK1P53355 1430 aa23.12■■□□□ 1.29
PNKP-202ENST00000593706 SCAF11Q99590 1463 aaKnown RBP23.11■■□□□ 1.29
PNKP-202ENST00000593706 FGD6Q6ZV73 1430 aa23.1■■□□□ 1.29
PNKP-202ENST00000593706 ALKQ9UM73 1620 aa23.1■■□□□ 1.29
PNKP-202ENST00000593706 KDM5AP29375 1690 aaKnown RBP23.09■■□□□ 1.29
PNKP-202ENST00000593706 ARHGAP31Q2M1Z3 1444 aa23.09■■□□□ 1.29
PNKP-202ENST00000593706 HSPA1LP34931 641 aa23.09■■□□□ 1.29
PNKP-202ENST00000593706 XIRP1Q702N8 1843 aaKnown RBP23.09■■□□□ 1.29
PNKP-202ENST00000593706 SLIT1O75093 1534 aa23.08■■□□□ 1.29
PNKP-202ENST00000593706 RRP7BPQ9NSQ0 103 aa23.08■■□□□ 1.29
PNKP-202ENST00000593706 LRRC7Q96NW7 1537 aa23.08■■□□□ 1.28
PNKP-202ENST00000593706 KANK1Q14678 1352 aa23.06■■□□□ 1.28
PNKP-202ENST00000593706 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.06■■□□□ 1.281e-7■■■■□ 24.4
PNKP-202ENST00000593706 ARHGAP23Q9P227 1491 aa23.05■■□□□ 1.28
PNKP-202ENST00000593706 ANKRD30AQ9BXX3 1397 aa23.02■■□□□ 1.28
PNKP-202ENST00000593706 EFCAB6Q5THR3 1501 aa23.01■■□□□ 1.27
PNKP-202ENST00000593706 LMTK2Q8IWU2 1503 aa23.01■■□□□ 1.27
PNKP-202ENST00000593706 MYO5BQ9ULV0 1848 aa23■■□□□ 1.27
PNKP-202ENST00000593706 CHIC2Q9UKJ5 165 aa22.99■■□□□ 1.27
PNKP-202ENST00000593706 TXNDC2Q86VQ3 553 aa22.98■■□□□ 1.27
PNKP-202ENST00000593706 STAG3Q9UJ98 1225 aa22.98■■□□□ 1.27
PNKP-202ENST00000593706 EID1Q9Y6B2 187 aa22.98■■□□□ 1.27
PNKP-202ENST00000593706 ADGRB3O60242 1522 aa22.97■■□□□ 1.27
PNKP-202ENST00000593706 LTKP29376 864 aa22.96■■□□□ 1.27
PNKP-202ENST00000593706 SENP3Q9H4L4 574 aaPredicted RBP22.96■■□□□ 1.27
PNKP-202ENST00000593706 TMEM2Q9UHN6 1383 aa22.95■■□□□ 1.26
PNKP-202ENST00000593706 GCC2Q8IWJ2 1684 aa22.94■■□□□ 1.26
PNKP-202ENST00000593706 ADGRL2O95490 1459 aa22.94■■□□□ 1.26
PNKP-202ENST00000593706 TET3O43151 1660 aa22.93■■□□□ 1.26
PNKP-202ENST00000593706 PHF23Q9BUL5 403 aaPredicted RBP22.9■■□□□ 1.26
PNKP-202ENST00000593706 FAM50AQ14320 339 aaKnown RBP22.88■■□□□ 1.25
PNKP-202ENST00000593706 NOS1P29475 1434 aa22.88■■□□□ 1.25
PNKP-202ENST00000593706 RPRD2Q5VT52 1461 aaKnown RBP22.86■■□□□ 1.25
PNKP-202ENST00000593706 UNC13BO14795 1591 aa22.86■■□□□ 1.25
PNKP-202ENST00000593706 IDI1Q13907 227 aa22.86■■□□□ 1.25
PNKP-202ENST00000593706 NWD1Q149M9 1564 aa22.85■■□□□ 1.25
PNKP-202ENST00000593706 ANKRD50Q9ULJ7 1429 aa22.85■■□□□ 1.25
PNKP-202ENST00000593706 ROBO1Q9Y6N7 1651 aa22.84■■□□□ 1.25
PNKP-202ENST00000593706 CHD2O14647 1828 aaKnown RBP22.83■■□□□ 1.25
PNKP-202ENST00000593706 E9PCH4 1651 aa22.82■■□□□ 1.24
PNKP-202ENST00000593706 NKTRP30414 1462 aaKnown RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms