RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 POLR1AO95602 1720 aaPredicted RBP14.29□□□□□ -0.12
SMAD4-215ENST00000592911 UBAP1LF5GYI3 381 aa14.28□□□□□ -0.12
SMAD4-215ENST00000592911 ZNF335Q9H4Z2 1342 aaPredicted RBP14.27□□□□□ -0.12
SMAD4-215ENST00000592911 RTEL1-TNFRSF6BF6WH68 1400 aa14.26□□□□□ -0.13
SMAD4-215ENST00000592911 DNMT1P26358 1616 aaKnown RBP14.26□□□□□ -0.13
SMAD4-215ENST00000592911 NCKAP5LQ9HCH0 1330 aa14.24□□□□□ -0.13
SMAD4-215ENST00000592911 TOM1O60784 492 aa14.23□□□□□ -0.13
SMAD4-215ENST00000592911 CFDP1Q9UEE9 299 aaPredicted RBP14.22□□□□□ -0.13
SMAD4-215ENST00000592911 DEPDC5O75140 1603 aa14.22□□□□□ -0.13
SMAD4-215ENST00000592911 MED1Q15648 1581 aaPredicted RBP14.22□□□□□ -0.13
SMAD4-215ENST00000592911 CCNB3Q8WWL7 1395 aa14.22□□□□□ -0.13
SMAD4-215ENST00000592911 PZPP20742 1482 aa14.21□□□□□ -0.13
SMAD4-215ENST00000592911 SHANK2Q9UPX8 1470 aa14.2□□□□□ -0.14
SMAD4-215ENST00000592911 NEURL4Q96JN8 1562 aa14.2□□□□□ -0.14
SMAD4-215ENST00000592911 MED14O60244 1454 aa14.19□□□□□ -0.14
SMAD4-215ENST00000592911 NLRP1Q9C000 1473 aa14.19□□□□□ -0.14
SMAD4-215ENST00000592911 HNRNPMP52272 730 aaKnown RBP eCLIP14.19□□□□□ -0.143e-7■□□□□ 10.2
SMAD4-215ENST00000592911 RSPH4AQ5TD94 716 aa14.19□□□□□ -0.14
SMAD4-215ENST00000592911 ZNF777Q9ULD5 760 aaPredicted RBP14.19□□□□□ -0.14
SMAD4-215ENST00000592911 KDM5DQ9BY66 1539 aa14.19□□□□□ -0.14
SMAD4-215ENST00000592911 DHX29Q7Z478 1369 aaKnown RBP14.19□□□□□ -0.14
SMAD4-215ENST00000592911 MBD5Q9P267 1494 aa14.18□□□□□ -0.14
SMAD4-215ENST00000592911 DCAF8L1A6NGE4 600 aa14.17□□□□□ -0.14
SMAD4-215ENST00000592911 GGT6Q6P531 493 aa14.17□□□□□ -0.14
SMAD4-215ENST00000592911 TNRQ92752 1358 aa14.17□□□□□ -0.14
SMAD4-215ENST00000592911 EHBP1L1Q8N3D4 1523 aa14.16□□□□□ -0.14
SMAD4-215ENST00000592911 MTUS2Q5JR59 1369 aa14.16□□□□□ -0.14
SMAD4-215ENST00000592911 SYNMO15061 1565 aa14.15□□□□□ -0.14
SMAD4-215ENST00000592911 TIAM1Q13009 1591 aa14.15□□□□□ -0.14
SMAD4-215ENST00000592911 VWDEQ8N2E2 1590 aa14.15□□□□□ -0.14
SMAD4-215ENST00000592911 THEMISQ8N1K5 641 aaPredicted RBP14.15□□□□□ -0.14
SMAD4-215ENST00000592911 CEP162Q5TB80 1403 aa14.15□□□□□ -0.14
SMAD4-215ENST00000592911 ANKLE2Q86XL3 938 aa14.14□□□□□ -0.15
SMAD4-215ENST00000592911 ZC3H13Q5T200 1668 aaKnown RBP14.14□□□□□ -0.15
SMAD4-215ENST00000592911 HSPA1LP34931 641 aa14.13□□□□□ -0.15
SMAD4-215ENST00000592911 CCDC141Q6ZP82 1450 aa14.12□□□□□ -0.15
SMAD4-215ENST00000592911 IQGAP1P46940 1657 aa14.12□□□□□ -0.15
SMAD4-215ENST00000592911 MIA2Q96PC5 1412 aa14.12□□□□□ -0.15
SMAD4-215ENST00000592911 UGGT1Q9NYU2 1555 aa14.12□□□□□ -0.15
SMAD4-215ENST00000592911 RNF17Q9BXT8 1623 aaKnown RBP14.12□□□□□ -0.15
SMAD4-215ENST00000592911 NPHP4O75161 1426 aaPredicted RBP14.1□□□□□ -0.15
SMAD4-215ENST00000592911 ARHGEF5Q12774 1597 aa14.09□□□□□ -0.15
SMAD4-215ENST00000592911 ALKQ9UM73 1620 aa14.08□□□□□ -0.15
SMAD4-215ENST00000592911 WASHC2CQ9Y4E1 1318 aa14.08□□□□□ -0.16
SMAD4-215ENST00000592911 EIF2AK4Q9P2K8 1649 aaKnown RBP14.08□□□□□ -0.16
SMAD4-215ENST00000592911 EHMT2Q96KQ7 1210 aa14.07□□□□□ -0.16
SMAD4-215ENST00000592911 KIF3BO15066 747 aa14.06□□□□□ -0.16
SMAD4-215ENST00000592911 PIP4K2BP78356 416 aa14.06□□□□□ -0.16
SMAD4-215ENST00000592911 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.06□□□□□ -0.16
SMAD4-215ENST00000592911 CAMSAP2Q08AD1 1489 aa14.05□□□□□ -0.16
SMAD4-215ENST00000592911 MAST1Q9Y2H9 1570 aa14.05□□□□□ -0.16
SMAD4-215ENST00000592911 LRRC7Q96NW7 1537 aa14.04□□□□□ -0.16
SMAD4-215ENST00000592911 FBXO31Q5XUX0 539 aaPredicted RBP14.03□□□□□ -0.16
SMAD4-215ENST00000592911 STRCP1A6NGW2 1772 aa14.03□□□□□ -0.16
SMAD4-215ENST00000592911 ABCC3O15438 1527 aa14.02□□□□□ -0.16
SMAD4-215ENST00000592911 ZNF644Q9H582 1327 aaPredicted RBP14.02□□□□□ -0.17
SMAD4-215ENST00000592911 TSPY4P0CV99 314 aa14.01□□□□□ -0.17
SMAD4-215ENST00000592911 TSPY10P0CW01 314 aa14.01□□□□□ -0.17
SMAD4-215ENST00000592911 UBR1Q8IWV7 1749 aa14.01□□□□□ -0.17
SMAD4-215ENST00000592911 KDM5AP29375 1690 aaKnown RBP14.01□□□□□ -0.17
SMAD4-215ENST00000592911 SLIT1O75093 1534 aa14□□□□□ -0.17
SMAD4-215ENST00000592911 ERVK-7P63135 1459 aa14□□□□□ -0.17
SMAD4-215ENST00000592911 NCOA2Q15596 1464 aa14□□□□□ -0.17
SMAD4-215ENST00000592911 SCAF11Q99590 1463 aaKnown RBP13.99□□□□□ -0.17
SMAD4-215ENST00000592911 ARHGAP23Q9P227 1491 aa13.99□□□□□ -0.17
SMAD4-215ENST00000592911 ARHGAP31Q2M1Z3 1444 aa13.98□□□□□ -0.17
SMAD4-215ENST00000592911 FAM135BQ49AJ0 1406 aa13.97□□□□□ -0.17
SMAD4-215ENST00000592911 XIRP1Q702N8 1843 aaKnown RBP13.95□□□□□ -0.18
SMAD4-215ENST00000592911 MROH1Q8NDA8 1641 aa13.95□□□□□ -0.18
SMAD4-215ENST00000592911 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
SMAD4-215ENST00000592911 DUOX2Q9NRD8 1548 aa13.94□□□□□ -0.18
SMAD4-215ENST00000592911 CFAP65Q6ZU64 1925 aaKnown RBP13.94□□□□□ -0.18
SMAD4-215ENST00000592911 LRRC9Q6ZRR7 1453 aa13.93□□□□□ -0.18
SMAD4-215ENST00000592911 PRDM15P57071 1507 aaPredicted RBP13.93□□□□□ -0.18
SMAD4-215ENST00000592911 CEP152O94986 1710 aa13.92□□□□□ -0.18
SMAD4-215ENST00000592911 MAP3K1Q13233 1512 aa13.91□□□□□ -0.18
SMAD4-215ENST00000592911 EID1Q9Y6B2 187 aa13.91□□□□□ -0.18
SMAD4-215ENST00000592911 ERBINQ96RT1 1412 aa13.9□□□□□ -0.18
SMAD4-215ENST00000592911 MYOM3Q5VTT5 1437 aa13.9□□□□□ -0.19
SMAD4-215ENST00000592911 ZBTB22O15209 634 aa13.89□□□□□ -0.19
SMAD4-215ENST00000592911 NKTRP30414 1462 aaKnown RBP13.87□□□□□ -0.19
SMAD4-215ENST00000592911 TMEM2Q9UHN6 1383 aa13.87□□□□□ -0.19
SMAD4-215ENST00000592911 TXNDC2Q86VQ3 553 aa13.87□□□□□ -0.19
SMAD4-215ENST00000592911 RGS17Q9UGC6 210 aaPredicted RBP13.87□□□□□ -0.19
SMAD4-215ENST00000592911 NWD1Q149M9 1564 aa13.86□□□□□ -0.19
SMAD4-215ENST00000592911 LMTK2Q8IWU2 1503 aa13.85□□□□□ -0.19
SMAD4-215ENST00000592911 PIK3C2BO00750 1634 aa13.85□□□□□ -0.19
SMAD4-215ENST00000592911 CROCC2H7BZ55 1655 aa13.85□□□□□ -0.19
SMAD4-215ENST00000592911 ROBO1Q9Y6N7 1651 aa13.85□□□□□ -0.19
SMAD4-215ENST00000592911 EFCAB6Q5THR3 1501 aa13.85□□□□□ -0.19
SMAD4-215ENST00000592911 KCNA6P17658 529 aa13.84□□□□□ -0.19
SMAD4-215ENST00000592911 LTKP29376 864 aa13.84□□□□□ -0.19
SMAD4-215ENST00000592911 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.193e-6■■□□□ 11.7
SMAD4-215ENST00000592911 TET3O43151 1660 aa13.83□□□□□ -0.2
SMAD4-215ENST00000592911 KANK1Q14678 1352 aa13.83□□□□□ -0.2
SMAD4-215ENST00000592911 VPS8Q8N3P4 1428 aa13.82□□□□□ -0.2
SMAD4-215ENST00000592911 NCOA3Q9Y6Q9 1424 aa13.82□□□□□ -0.2
SMAD4-215ENST00000592911 TMEM94Q12767 1356 aa13.82□□□□□ -0.2
SMAD4-215ENST00000592911 KIF15Q9NS87 1388 aa13.82□□□□□ -0.2
SMAD4-215ENST00000592911 FOXD4L1Q9NU39 408 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms