RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 NISCHQ9Y2I1 1504 aa22.34■■□□□ 1.17
SMAD4-215ENST00000592911 AEBP2Q6ZN18 517 aaPredicted RBP21.97■■□□□ 1.11
SMAD4-215ENST00000592911 CHIC1Q5VXU3 224 aa21.44■■□□□ 1.02
SMAD4-215ENST00000592911 ABCC9O60706 1549 aa20.32■□□□□ 0.84
SMAD4-215ENST00000592911 CCDC180Q9P1Z9 1646 aa20.32■□□□□ 0.84
SMAD4-215ENST00000592911 RB1CC1Q8TDY2 1594 aa19.42■□□□□ 0.7
SMAD4-215ENST00000592911 DNAJC5BQ9UF47 199 aa19.26■□□□□ 0.67
SMAD4-215ENST00000592911 NACADO15069 1562 aa19.26■□□□□ 0.67
SMAD4-215ENST00000592911 MYO15BQ96JP2 1530 aa19■□□□□ 0.63
SMAD4-215ENST00000592911 UNC13AQ9UPW8 1703 aa18.93■□□□□ 0.62
SMAD4-215ENST00000592911 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
SMAD4-215ENST00000592911 PABPN1Q86U42 306 aaKnown RBP eCLIP18.78■□□□□ 0.6
SMAD4-215ENST00000592911 BICRAQ9NZM4 1560 aa18.77■□□□□ 0.6
SMAD4-215ENST00000592911 SHROOM4Q9ULL8 1493 aa18.77■□□□□ 0.59
SMAD4-215ENST00000592911 DCAF8L2P0C7V8 631 aa18.7■□□□□ 0.58
SMAD4-215ENST00000592911 DCAF1Q9Y4B6 1507 aa18.59■□□□□ 0.57
SMAD4-215ENST00000592911 SENP3Q9H4L4 574 aaPredicted RBP18.55■□□□□ 0.56
SMAD4-215ENST00000592911 ZCCHC6Q5VYS8 1495 aaKnown RBP18.46■□□□□ 0.55
SMAD4-215ENST00000592911 CC2D2AQ9P2K1 1620 aa18.45■□□□□ 0.54
SMAD4-215ENST00000592911 CECR2Q9BXF3 1484 aa18.44■□□□□ 0.54
SMAD4-215ENST00000592911 EIF4G1Q04637 1599 aaKnown RBP18.37■□□□□ 0.53
SMAD4-215ENST00000592911 SCRIBQ14160 1630 aa18.25■□□□□ 0.51
SMAD4-215ENST00000592911 DNAJC5Q9H3Z4 198 aa18.08■□□□□ 0.48
SMAD4-215ENST00000592911 CUX2O14529 1486 aa17.87■□□□□ 0.45
SMAD4-215ENST00000592911 NCAPD3P42695 1498 aa17.74■□□□□ 0.43
SMAD4-215ENST00000592911 ERCC6Q03468 1493 aa17.65■□□□□ 0.42
SMAD4-215ENST00000592911 HMGXB3Q12766 1538 aa17.62■□□□□ 0.41
SMAD4-215ENST00000592911 SMARCA2P51531 1590 aa17.59■□□□□ 0.41
SMAD4-215ENST00000592911 ATAD2BQ9ULI0 1458 aa17.57■□□□□ 0.4
SMAD4-215ENST00000592911 SMARCA4P51532 1647 aa17.49■□□□□ 0.39
SMAD4-215ENST00000592911 PEG3Q9GZU2 1588 aa17.44■□□□□ 0.38
SMAD4-215ENST00000592911 BAZ1AQ9NRL2 1556 aaPredicted RBP17.41■□□□□ 0.38
SMAD4-215ENST00000592911 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
SMAD4-215ENST00000592911 THOC2Q8NI27 1593 aaKnown RBP17.4■□□□□ 0.38
SMAD4-215ENST00000592911 PLPPR3Q6T4P5 718 aa17.39■□□□□ 0.37
SMAD4-215ENST00000592911 BAZ1BQ9UIG0 1483 aaKnown RBP17.38■□□□□ 0.37
SMAD4-215ENST00000592911 NESP48681 1621 aa17.36■□□□□ 0.37
SMAD4-215ENST00000592911 PDS5BQ9NTI5 1447 aa17.29■□□□□ 0.36
SMAD4-215ENST00000592911 FOXD1Q16676 465 aa17.27■□□□□ 0.36
SMAD4-215ENST00000592911 KIF21AQ7Z4S6 1674 aa17.23■□□□□ 0.35
SMAD4-215ENST00000592911 CADPSQ9ULU8 1353 aa17.13■□□□□ 0.33
SMAD4-215ENST00000592911 MRC2Q9UBG0 1479 aa17.12■□□□□ 0.33
SMAD4-215ENST00000592911 WDR62O43379 1518 aa17.12■□□□□ 0.33
SMAD4-215ENST00000592911 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
SMAD4-215ENST00000592911 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
SMAD4-215ENST00000592911 TRIM41Q8WV44 630 aa16.97■□□□□ 0.31
SMAD4-215ENST00000592911 FANCD2Q9BXW9 1451 aa16.91■□□□□ 0.3
SMAD4-215ENST00000592911 CFTRP13569 1480 aa16.9■□□□□ 0.3
SMAD4-215ENST00000592911 WIZO95785 1651 aa16.89■□□□□ 0.29
SMAD4-215ENST00000592911 OSCARQ8IYS5 282 aa16.88■□□□□ 0.29
SMAD4-215ENST00000592911 PRDM2Q13029 1718 aa16.81■□□□□ 0.28
SMAD4-215ENST00000592911 TOP2AP11388 1531 aaKnown RBP16.76■□□□□ 0.27
SMAD4-215ENST00000592911 URB2Q14146 1524 aaKnown RBP16.75■□□□□ 0.27
SMAD4-215ENST00000592911 IFT140Q96RY7 1462 aa16.69■□□□□ 0.26
SMAD4-215ENST00000592911 PPP6R1Q9UPN7 881 aa16.69■□□□□ 0.26
SMAD4-215ENST00000592911 RIMBP3CA6NJZ7 1639 aa16.69■□□□□ 0.26
SMAD4-215ENST00000592911 RIMBP3BA6NNM3 1639 aa16.69■□□□□ 0.26
SMAD4-215ENST00000592911 RIMBP3Q9UFD9 1639 aa16.69■□□□□ 0.26
SMAD4-215ENST00000592911 RSF1Q96T23 1441 aaPredicted RBP16.68■□□□□ 0.26
SMAD4-215ENST00000592911 ABCC8Q09428 1581 aa16.65■□□□□ 0.26
SMAD4-215ENST00000592911 ADRA2BP18089 450 aa16.65■□□□□ 0.26
SMAD4-215ENST00000592911 ARHGEF11O15085 1522 aa16.62■□□□□ 0.25
SMAD4-215ENST00000592911 TOPBP1Q92547 1522 aa16.55■□□□□ 0.24
SMAD4-215ENST00000592911 ZNF608Q9ULD9 1512 aaPredicted RBP16.55■□□□□ 0.24
SMAD4-215ENST00000592911 EIF4G3O43432 1585 aaKnown RBP16.53■□□□□ 0.24
SMAD4-215ENST00000592911 DNMBPQ6XZF7 1577 aa16.51■□□□□ 0.23
SMAD4-215ENST00000592911 CCDC88BA6NC98 1476 aa16.48■□□□□ 0.23
SMAD4-215ENST00000592911 WDR97A6NE52 1622 aa16.47■□□□□ 0.23
SMAD4-215ENST00000592911 TARBP1Q13395 1621 aaKnown RBP16.46■□□□□ 0.23
SMAD4-215ENST00000592911 CHD1O14646 1710 aa16.46■□□□□ 0.23
SMAD4-215ENST00000592911 ARAP1Q96P48 1450 aa16.41■□□□□ 0.22
SMAD4-215ENST00000592911 CYB5RLQ6IPT4 315 aa16.39■□□□□ 0.21
SMAD4-215ENST00000592911 POLA1P09884 1462 aaPredicted RBP16.35■□□□□ 0.21
SMAD4-215ENST00000592911 AQRO60306 1485 aaKnown RBP eCLIP16.35■□□□□ 0.211e-7■■■■□ 24.4
SMAD4-215ENST00000592911 CLASP1Q7Z460 1538 aa16.31■□□□□ 0.2
SMAD4-215ENST00000592911 SYNJ1O43426 1573 aa16.3■□□□□ 0.2
SMAD4-215ENST00000592911 MAGI1Q96QZ7 1491 aaPredicted RBP16.3■□□□□ 0.2
SMAD4-215ENST00000592911 TRHP20396 242 aaPredicted RBP16.29■□□□□ 0.2
SMAD4-215ENST00000592911 SOGA1O94964 1423 aa16.26■□□□□ 0.19
SMAD4-215ENST00000592911 PIAS4Q8N2W9 510 aaPredicted RBP16.25■□□□□ 0.19
SMAD4-215ENST00000592911 FBLN2P98095 1184 aa16.23■□□□□ 0.19
SMAD4-215ENST00000592911 SNAPC4Q5SXM2 1469 aa16.22■□□□□ 0.19
SMAD4-215ENST00000592911 GRIN2BQ13224 1484 aa16.22■□□□□ 0.19
SMAD4-215ENST00000592911 SYNJ2O15056 1496 aa16.21■□□□□ 0.19
SMAD4-215ENST00000592911 RAD54L2Q9Y4B4 1467 aa16.2■□□□□ 0.18
SMAD4-215ENST00000592911 FGD5Q6ZNL6 1462 aa16.19■□□□□ 0.18
SMAD4-215ENST00000592911 TDRD9Q8NDG6 1382 aaKnown RBP16.18■□□□□ 0.18
SMAD4-215ENST00000592911 CHMP7Q8WUX9 453 aaPredicted RBP16.18■□□□□ 0.18
SMAD4-215ENST00000592911 PBRM1Q86U86 1689 aa16.13■□□□□ 0.17
SMAD4-215ENST00000592911 CUX1P39880 1505 aa16.12■□□□□ 0.17
SMAD4-215ENST00000592911 GAPVD1Q14C86 1478 aa16.1■□□□□ 0.17
SMAD4-215ENST00000592911 ABCA10Q8WWZ4 1543 aa16.08■□□□□ 0.16
SMAD4-215ENST00000592911 ABCA5Q8WWZ7 1642 aa16.07■□□□□ 0.16
SMAD4-215ENST00000592911 GRIN2AQ12879 1464 aa15.99■□□□□ 0.15
SMAD4-215ENST00000592911 NUP160Q12769 1436 aa15.98■□□□□ 0.15
SMAD4-215ENST00000592911 SHROOM2Q13796 1616 aa15.97■□□□□ 0.15
SMAD4-215ENST00000592911 ADAMTS12P58397 1594 aa15.96■□□□□ 0.14
SMAD4-215ENST00000592911 CEP170Q5SW79 1584 aa15.94■□□□□ 0.14
SMAD4-215ENST00000592911 WRNQ14191 1432 aaPredicted RBP eCLIP15.93■□□□□ 0.14
SMAD4-215ENST00000592911 FHAD1B1AJZ9 1412 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms