RNA–Protein interactions for RNA: ENST00000592333.1

CCDC43-205, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 692 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-205ENST00000592333 CEP170BQ9Y4F5 1589 aaPredicted RBP29.77■■■□□ 2.36
CCDC43-205ENST00000592333 MAST1Q9Y2H9 1570 aa29.76■■■□□ 2.35
CCDC43-205ENST00000592333 KDM5DQ9BY66 1539 aa29.76■■■□□ 2.35
CCDC43-205ENST00000592333 KANK4Q5T7N3 995 aaPredicted RBP29.75■■■□□ 2.35
CCDC43-205ENST00000592333 MYOM3Q5VTT5 1437 aa29.75■■■□□ 2.35
CCDC43-205ENST00000592333 IQSEC2Q5JU85 1478 aa29.73■■■□□ 2.35
CCDC43-205ENST00000592333 PZPP20742 1482 aa29.72■■■□□ 2.35
CCDC43-205ENST00000592333 WASHC2CQ9Y4E1 1318 aa29.71■■■□□ 2.35
CCDC43-205ENST00000592333 A2ML1A8K2U0 1454 aa29.71■■■□□ 2.35
CCDC43-205ENST00000592333 TCOF1Q13428 1488 aaKnown RBP29.71■■■□□ 2.35
CCDC43-205ENST00000592333 LTBP4Q8N2S1 1624 aa29.7■■■□□ 2.34
CCDC43-205ENST00000592333 APLP2Q06481 763 aa29.68■■■□□ 2.34
CCDC43-205ENST00000592333 NCKAP5LQ9HCH0 1330 aa29.65■■■□□ 2.34
CCDC43-205ENST00000592333 TNRQ92752 1358 aa29.64■■■□□ 2.34
CCDC43-205ENST00000592333 EIF2AK4Q9P2K8 1649 aaKnown RBP29.64■■■□□ 2.34
CCDC43-205ENST00000592333 DNMT1P26358 1616 aaKnown RBP29.63■■■□□ 2.33
CCDC43-205ENST00000592333 RNF17Q9BXT8 1623 aaKnown RBP29.63■■■□□ 2.33
CCDC43-205ENST00000592333 FBXO31Q5XUX0 539 aaPredicted RBP29.6■■■□□ 2.33
CCDC43-205ENST00000592333 NLRP1Q9C000 1473 aa29.6■■■□□ 2.33
CCDC43-205ENST00000592333 ZC3H13Q5T200 1668 aaKnown RBP29.6■■■□□ 2.33
CCDC43-205ENST00000592333 DUOX2Q9NRD8 1548 aa29.57■■■□□ 2.32
CCDC43-205ENST00000592333 SHANK2Q9UPX8 1470 aa29.57■■■□□ 2.32
CCDC43-205ENST00000592333 THEMISQ8N1K5 641 aaPredicted RBP29.55■■■□□ 2.32
CCDC43-205ENST00000592333 ABCC3O15438 1527 aa29.54■■■□□ 2.32
CCDC43-205ENST00000592333 PTPN23Q9H3S7 1636 aa29.51■■■□□ 2.31
CCDC43-205ENST00000592333 ZNF335Q9H4Z2 1342 aaPredicted RBP29.5■■■□□ 2.31
CCDC43-205ENST00000592333 ABCC5O15440 1437 aa29.5■■■□□ 2.31
CCDC43-205ENST00000592333 SPATA31D1Q6ZQQ2 1576 aa29.49■■■□□ 2.31
CCDC43-205ENST00000592333 ERBINQ96RT1 1412 aa29.49■■■□□ 2.31
CCDC43-205ENST00000592333 MROH1Q8NDA8 1641 aa29.49■■■□□ 2.31
CCDC43-205ENST00000592333 UGGT1Q9NYU2 1555 aa29.48■■■□□ 2.31
CCDC43-205ENST00000592333 ANKLE2Q86XL3 938 aa29.48■■■□□ 2.31
CCDC43-205ENST00000592333 POLR1AO95602 1720 aaPredicted RBP29.48■■■□□ 2.31
CCDC43-205ENST00000592333 CROCC2H7BZ55 1655 aa29.47■■■□□ 2.31
CCDC43-205ENST00000592333 FGD6Q6ZV73 1430 aa29.47■■■□□ 2.31
CCDC43-205ENST00000592333 KIF15Q9NS87 1388 aa29.47■■■□□ 2.31
CCDC43-205ENST00000592333 DAPK1P53355 1430 aa29.45■■■□□ 2.3
CCDC43-205ENST00000592333 NEURL4Q96JN8 1562 aa29.43■■■□□ 2.3
CCDC43-205ENST00000592333 ARHGAP31Q2M1Z3 1444 aa29.43■■■□□ 2.3
CCDC43-205ENST00000592333 MED14O60244 1454 aa29.42■■■□□ 2.3
CCDC43-205ENST00000592333 ERVK-7P63135 1459 aa29.42■■■□□ 2.3
CCDC43-205ENST00000592333 DEPDC5O75140 1603 aa29.42■■■□□ 2.3
CCDC43-205ENST00000592333 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.42■■■□□ 2.3
CCDC43-205ENST00000592333 PRDM15P57071 1507 aaPredicted RBP29.42■■■□□ 2.3
CCDC43-205ENST00000592333 RRP7BPQ9NSQ0 103 aa29.39■■■□□ 2.3
CCDC43-205ENST00000592333 CPS1P31327 1500 aa29.39■■■□□ 2.3
CCDC43-205ENST00000592333 ANKRD30AQ9BXX3 1397 aa29.39■■■□□ 2.29
CCDC43-205ENST00000592333 CEP152O94986 1710 aa29.35■■■□□ 2.29
CCDC43-205ENST00000592333 NPHP4O75161 1426 aaPredicted RBP29.35■■■□□ 2.29
CCDC43-205ENST00000592333 KANK1Q14678 1352 aa29.34■■■□□ 2.29
CCDC43-205ENST00000592333 UBAP1LF5GYI3 381 aa29.32■■■□□ 2.28
CCDC43-205ENST00000592333 LMTK2Q8IWU2 1503 aa29.29■■■□□ 2.28
CCDC43-205ENST00000592333 ADGRL2O95490 1459 aa29.29■■■□□ 2.28
CCDC43-205ENST00000592333 VWDEQ8N2E2 1590 aa29.27■■■□□ 2.28
CCDC43-205ENST00000592333 IQGAP1P46940 1657 aa29.27■■■□□ 2.28
CCDC43-205ENST00000592333 UBR1Q8IWV7 1749 aa29.26■■■□□ 2.27
CCDC43-205ENST00000592333 CHIC2Q9UKJ5 165 aa29.24■■■□□ 2.27
CCDC43-205ENST00000592333 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.23■■■□□ 2.272e-6■□□□□ 10.7
CCDC43-205ENST00000592333 SLIT1O75093 1534 aa29.23■■■□□ 2.27
CCDC43-205ENST00000592333 ARHGAP23Q9P227 1491 aa29.23■■■□□ 2.27
CCDC43-205ENST00000592333 TOM1O60784 492 aa29.22■■■□□ 2.27
CCDC43-205ENST00000592333 CFAP65Q6ZU64 1925 aaKnown RBP29.21■■■□□ 2.27
CCDC43-205ENST00000592333 SCAF11Q99590 1463 aaKnown RBP29.21■■■□□ 2.27
CCDC43-205ENST00000592333 DISP3Q9P2K9 1392 aa29.2■■■□□ 2.26
CCDC43-205ENST00000592333 KDM5AP29375 1690 aaKnown RBP29.19■■■□□ 2.26
CCDC43-205ENST00000592333 FAM50AQ14320 339 aaKnown RBP29.17■■■□□ 2.26
CCDC43-205ENST00000592333 EID1Q9Y6B2 187 aa29.16■■■□□ 2.26
CCDC43-205ENST00000592333 ANKRD50Q9ULJ7 1429 aa29.14■■■□□ 2.26
CCDC43-205ENST00000592333 TXNDC2Q86VQ3 553 aa29.14■■■□□ 2.26
CCDC43-205ENST00000592333 EFCAB6Q5THR3 1501 aa29.13■■■□□ 2.25
CCDC43-205ENST00000592333 TMEM2Q9UHN6 1383 aa29.13■■■□□ 2.25
CCDC43-205ENST00000592333 NOS1P29475 1434 aa29.12■■■□□ 2.25
CCDC43-205ENST00000592333 RPRD2Q5VT52 1461 aaKnown RBP29.12■■■□□ 2.25
CCDC43-205ENST00000592333 LTKP29376 864 aa29.12■■■□□ 2.25
CCDC43-205ENST00000592333 PIK3C2BO00750 1634 aa29.12■■■□□ 2.25
CCDC43-205ENST00000592333 SYNMO15061 1565 aa29.11■■■□□ 2.25
CCDC43-205ENST00000592333 SLC52A1Q9NWF4 448 aa29.1■■■□□ 2.25
CCDC43-205ENST00000592333 STAG3Q9UJ98 1225 aa29.1■■■□□ 2.25
CCDC43-205ENST00000592333 IDI1Q13907 227 aa29.09■■■□□ 2.25
CCDC43-205ENST00000592333 LRRC7Q96NW7 1537 aa29.07■■■□□ 2.24
CCDC43-205ENST00000592333 ROCK1Q13464 1354 aa29.06■■■□□ 2.24
CCDC43-205ENST00000592333 STRCP1A6NGW2 1772 aa29.04■■■□□ 2.24
CCDC43-205ENST00000592333 PIP4K2BP78356 416 aa29.02■■■□□ 2.24
CCDC43-205ENST00000592333 SCAF1Q9H7N4 1312 aaKnown RBP29.01■■■□□ 2.23
CCDC43-205ENST00000592333 TET3O43151 1660 aa29■■■□□ 2.23
CCDC43-205ENST00000592333 HSPA1LP34931 641 aa28.99■■■□□ 2.23
CCDC43-205ENST00000592333 ADGRB3O60242 1522 aa28.99■■■□□ 2.23
CCDC43-205ENST00000592333 ALKQ9UM73 1620 aa28.98■■■□□ 2.23
CCDC43-205ENST00000592333 UNC13BO14795 1591 aa28.98■■■□□ 2.23
CCDC43-205ENST00000592333 ILDR2Q71H61 639 aa28.97■■■□□ 2.23
CCDC43-205ENST00000592333 GCC2Q8IWJ2 1684 aa28.94■■■□□ 2.22
CCDC43-205ENST00000592333 HDGFP51858 240 aaKnown RBP28.94■■■□□ 2.22
CCDC43-205ENST00000592333 SOCS7O14512 581 aa28.92■■■□□ 2.22
CCDC43-205ENST00000592333 KCNA6P17658 529 aa28.91■■■□□ 2.22
CCDC43-205ENST00000592333 IQGAP3Q86VI3 1631 aa28.87■■■□□ 2.21
CCDC43-205ENST00000592333 ZFYVE9O95405 1425 aa28.86■■■□□ 2.21
CCDC43-205ENST00000592333 PLEKHG1Q9ULL1 1385 aa28.84■■■□□ 2.21
CCDC43-205ENST00000592333 TMEM131LA2VDJ0 1609 aa28.83■■■□□ 2.21
CCDC43-205ENST00000592333 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.83■■■□□ 2.21
CCDC43-205ENST00000592333 XIRP1Q702N8 1843 aaKnown RBP28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms