RNA–Protein interactions for RNA: ENST00000592333.1

CCDC43-205, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 692 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-205ENST00000592333 NISCHQ9Y2I1 1504 aa47.1■■■■■ 5.13
CCDC43-205ENST00000592333 CCDC180Q9P1Z9 1646 aa42.26■■■■■ 4.36
CCDC43-205ENST00000592333 ABCC9O60706 1549 aa41.95■■■■■ 4.31
CCDC43-205ENST00000592333 RB1CC1Q8TDY2 1594 aa40.14■■■■■ 4.02
CCDC43-205ENST00000592333 NACADO15069 1562 aa39.94■■■■□ 3.98
CCDC43-205ENST00000592333 MYO15BQ96JP2 1530 aa39.55■■■■□ 3.92
CCDC43-205ENST00000592333 DCAF8L2P0C7V8 631 aa39.54■■■■□ 3.92
CCDC43-205ENST00000592333 DNAJC5BQ9UF47 199 aa39.21■■■■□ 3.87
CCDC43-205ENST00000592333 UNC13AQ9UPW8 1703 aa39.09■■■■□ 3.85
CCDC43-205ENST00000592333 ZCCHC6Q5VYS8 1495 aaKnown RBP39.06■■■■□ 3.84
CCDC43-205ENST00000592333 DCAF1Q9Y4B6 1507 aa39.04■■■■□ 3.84
CCDC43-205ENST00000592333 PABPN1Q86U42 306 aaKnown RBP eCLIP39.04■■■■□ 3.84
CCDC43-205ENST00000592333 BICRAQ9NZM4 1560 aa38.88■■■■□ 3.81
CCDC43-205ENST00000592333 SHROOM4Q9ULL8 1493 aa38.61■■■■□ 3.77
CCDC43-205ENST00000592333 SCRIBQ14160 1630 aa38.33■■■■□ 3.73
CCDC43-205ENST00000592333 CC2D2AQ9P2K1 1620 aa37.96■■■■□ 3.67
CCDC43-205ENST00000592333 EIF4G1Q04637 1599 aaKnown RBP37.94■■■■□ 3.66
CCDC43-205ENST00000592333 CECR2Q9BXF3 1484 aa37.85■■■■□ 3.65
CCDC43-205ENST00000592333 NCAPD3P42695 1498 aa36.88■■■■□ 3.49
CCDC43-205ENST00000592333 ATAD2BQ9ULI0 1458 aa36.71■■■■□ 3.47
CCDC43-205ENST00000592333 SMARCA4P51532 1647 aa36.68■■■■□ 3.46
CCDC43-205ENST00000592333 SMARCA2P51531 1590 aa36.66■■■■□ 3.46
CCDC43-205ENST00000592333 HMGXB3Q12766 1538 aa36.59■■■■□ 3.45
CCDC43-205ENST00000592333 BAZ1AQ9NRL2 1556 aaPredicted RBP36.59■■■■□ 3.45
CCDC43-205ENST00000592333 PEG3Q9GZU2 1588 aa36.44■■■■□ 3.42
CCDC43-205ENST00000592333 BAZ1BQ9UIG0 1483 aaKnown RBP36.35■■■■□ 3.41
CCDC43-205ENST00000592333 CUX2O14529 1486 aa36.27■■■■□ 3.4
CCDC43-205ENST00000592333 ERCC6Q03468 1493 aa36.27■■■■□ 3.4
CCDC43-205ENST00000592333 MROH2BQ7Z745 1585 aa36.21■■■■□ 3.39
CCDC43-205ENST00000592333 NESP48681 1621 aa36.05■■■■□ 3.36
CCDC43-205ENST00000592333 DNAJC5Q9H3Z4 198 aa36.05■■■■□ 3.36
CCDC43-205ENST00000592333 LAMC3Q9Y6N6 1575 aa36■■■■□ 3.35
CCDC43-205ENST00000592333 PDS5BQ9NTI5 1447 aa35.81■■■■□ 3.32
CCDC43-205ENST00000592333 WIZO95785 1651 aa35.75■■■■□ 3.31
CCDC43-205ENST00000592333 THOC2Q8NI27 1593 aaKnown RBP35.74■■■■□ 3.31
CCDC43-205ENST00000592333 CADPSQ9ULU8 1353 aa35.73■■■■□ 3.31
CCDC43-205ENST00000592333 KIF21AQ7Z4S6 1674 aa35.61■■■■□ 3.29
CCDC43-205ENST00000592333 RSF1Q96T23 1441 aaPredicted RBP35.57■■■■□ 3.28
CCDC43-205ENST00000592333 MRC2Q9UBG0 1479 aa35.42■■■■□ 3.26
CCDC43-205ENST00000592333 TOP2AP11388 1531 aaKnown RBP35.41■■■■□ 3.26
CCDC43-205ENST00000592333 CFTRP13569 1480 aa35.35■■■■□ 3.25
CCDC43-205ENST00000592333 WDR62O43379 1518 aa35.34■■■■□ 3.25
CCDC43-205ENST00000592333 CEP164Q9UPV0 1460 aa35.3■■■■□ 3.24
CCDC43-205ENST00000592333 FANCD2Q9BXW9 1451 aa35.27■■■■□ 3.24
CCDC43-205ENST00000592333 CCDC88BA6NC98 1476 aa34.98■■■■□ 3.19
CCDC43-205ENST00000592333 PRDM2Q13029 1718 aa34.96■■■■□ 3.19
CCDC43-205ENST00000592333 URB2Q14146 1524 aaKnown RBP34.93■■■■□ 3.18
CCDC43-205ENST00000592333 ABCC8Q09428 1581 aa34.7■■■■□ 3.14
CCDC43-205ENST00000592333 IFT140Q96RY7 1462 aa34.64■■■■□ 3.14
CCDC43-205ENST00000592333 TOPBP1Q92547 1522 aa34.61■■■■□ 3.13
CCDC43-205ENST00000592333 OSCARQ8IYS5 282 aa34.61■■■■□ 3.13
CCDC43-205ENST00000592333 DNMBPQ6XZF7 1577 aa34.52■■■■□ 3.12
CCDC43-205ENST00000592333 ZNF608Q9ULD9 1512 aaPredicted RBP34.44■■■■□ 3.1
CCDC43-205ENST00000592333 TRIM41Q8WV44 630 aa34.35■■■■□ 3.09
CCDC43-205ENST00000592333 EIF4G3O43432 1585 aaKnown RBP34.29■■■■□ 3.08
CCDC43-205ENST00000592333 TARBP1Q13395 1621 aaKnown RBP34.29■■■■□ 3.08
CCDC43-205ENST00000592333 POLA1P09884 1462 aaPredicted RBP34.26■■■■□ 3.07
CCDC43-205ENST00000592333 AQRO60306 1485 aaKnown RBP eCLIP34.16■■■■□ 3.06
CCDC43-205ENST00000592333 SOGA1O94964 1423 aa34.13■■■■□ 3.05
CCDC43-205ENST00000592333 WDR97A6NE52 1622 aa34.11■■■■□ 3.05
CCDC43-205ENST00000592333 RAD54L2Q9Y4B4 1467 aa34.06■■■■□ 3.04
CCDC43-205ENST00000592333 FGD5Q6ZNL6 1462 aa34.04■■■■□ 3.04
CCDC43-205ENST00000592333 RIMBP3CA6NJZ7 1639 aa34.04■■■■□ 3.04
CCDC43-205ENST00000592333 RIMBP3BA6NNM3 1639 aa34.04■■■■□ 3.04
CCDC43-205ENST00000592333 RIMBP3Q9UFD9 1639 aa34.04■■■■□ 3.04
CCDC43-205ENST00000592333 CUX1P39880 1505 aa34.02■■■■□ 3.04
CCDC43-205ENST00000592333 ARHGEF11O15085 1522 aa33.99■■■■□ 3.03
CCDC43-205ENST00000592333 TDRD9Q8NDG6 1382 aaKnown RBP33.98■■■■□ 3.03
CCDC43-205ENST00000592333 CHD1O14646 1710 aa33.96■■■■□ 3.03
CCDC43-205ENST00000592333 SUPT5HO00267 1087 aaKnown RBP33.96■■■■□ 3.03
CCDC43-205ENST00000592333 FBLN2P98095 1184 aa33.89■■■■□ 3.02
CCDC43-205ENST00000592333 MAGI1Q96QZ7 1491 aaPredicted RBP33.86■■■■□ 3.01
CCDC43-205ENST00000592333 GRIN2BQ13224 1484 aa33.84■■■■□ 3.01
CCDC43-205ENST00000592333 SNAPC4Q5SXM2 1469 aa33.82■■■■□ 3.01
CCDC43-205ENST00000592333 CHMP7Q8WUX9 453 aaPredicted RBP33.75■■■□□ 2.99
CCDC43-205ENST00000592333 ABCA10Q8WWZ4 1543 aa33.74■■■□□ 2.99
CCDC43-205ENST00000592333 SYNJ2O15056 1496 aa33.72■■■□□ 2.99
CCDC43-205ENST00000592333 GAPVD1Q14C86 1478 aa33.72■■■□□ 2.99
CCDC43-205ENST00000592333 SYNJ1O43426 1573 aa33.69■■■□□ 2.98
CCDC43-205ENST00000592333 CYB5RLQ6IPT4 315 aa33.69■■■□□ 2.98
CCDC43-205ENST00000592333 CLASP1Q7Z460 1538 aa33.67■■■□□ 2.98
CCDC43-205ENST00000592333 WRNQ14191 1432 aaPredicted RBP eCLIP33.64■■■□□ 2.98
CCDC43-205ENST00000592333 ABCA5Q8WWZ7 1642 aa33.64■■■□□ 2.98
CCDC43-205ENST00000592333 PBRM1Q86U86 1689 aa33.63■■■□□ 2.97
CCDC43-205ENST00000592333 ARAP1Q96P48 1450 aa33.63■■■□□ 2.97
CCDC43-205ENST00000592333 TOP2BQ02880 1626 aa33.58■■■□□ 2.97
CCDC43-205ENST00000592333 BIVM-ERCC5R4GMW8 1640 aa33.57■■■□□ 2.97
CCDC43-205ENST00000592333 GRIN2AQ12879 1464 aa33.38■■■□□ 2.93
CCDC43-205ENST00000592333 ADAMTS12P58397 1594 aa33.35■■■□□ 2.93
CCDC43-205ENST00000592333 ERICH3Q5RHP9 1530 aa33.35■■■□□ 2.93
CCDC43-205ENST00000592333 FHAD1B1AJZ9 1412 aa33.34■■■□□ 2.93
CCDC43-205ENST00000592333 NUP160Q12769 1436 aa33.29■■■□□ 2.92
CCDC43-205ENST00000592333 TRHP20396 242 aaPredicted RBP33.25■■■□□ 2.91
CCDC43-205ENST00000592333 CEP170Q5SW79 1584 aa33.2■■■□□ 2.91
CCDC43-205ENST00000592333 SHROOM2Q13796 1616 aa33.12■■■□□ 2.89
CCDC43-205ENST00000592333 ERCC6L2Q5T890 1561 aa33.03■■■□□ 2.88
CCDC43-205ENST00000592333 AEBP2Q6ZN18 517 aaPredicted RBP32.97■■■□□ 2.87
CCDC43-205ENST00000592333 KIF27Q86VH2 1401 aa32.95■■■□□ 2.87
CCDC43-205ENST00000592333 JPH4Q96JJ6 628 aa32.95■■■□□ 2.87
CCDC43-205ENST00000592333 PRG4Q92954 1404 aaPredicted RBP32.92■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms