RNA–Protein interactions for RNA: ENST00000577901.5

VAPA-204, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 917 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-204ENST00000577901 RSPH4AQ5TD94 716 aa25.34■■□□□ 1.65
VAPA-204ENST00000577901 A2ML1A8K2U0 1454 aa25.32■■□□□ 1.64
VAPA-204ENST00000577901 KDM5DQ9BY66 1539 aa25.29■■□□□ 1.64
VAPA-204ENST00000577901 DNMT1P26358 1616 aaKnown RBP25.28■■□□□ 1.64
VAPA-204ENST00000577901 FBXO31Q5XUX0 539 aaPredicted RBP25.28■■□□□ 1.64
VAPA-204ENST00000577901 WASHC2CQ9Y4E1 1318 aa25.27■■□□□ 1.64
VAPA-204ENST00000577901 TNRQ92752 1358 aa25.27■■□□□ 1.64
VAPA-204ENST00000577901 FAM135AQ9P2D6 1515 aa25.27■■□□□ 1.64
VAPA-204ENST00000577901 PZPP20742 1482 aa25.26■■□□□ 1.63
VAPA-204ENST00000577901 ARHGEF5Q12774 1597 aa25.26■■□□□ 1.63
VAPA-204ENST00000577901 TSPY4P0CV99 314 aa25.25■■□□□ 1.63
VAPA-204ENST00000577901 TSPY10P0CW01 314 aa25.25■■□□□ 1.63
VAPA-204ENST00000577901 ILDR2Q71H61 639 aa25.25■■□□□ 1.63
VAPA-204ENST00000577901 VPS8Q8N3P4 1428 aa25.24■■□□□ 1.63
VAPA-204ENST00000577901 UBAP1LF5GYI3 381 aa25.24■■□□□ 1.63
VAPA-204ENST00000577901 LRRC9Q6ZRR7 1453 aa25.22■■□□□ 1.63
VAPA-204ENST00000577901 SPATA31D1Q6ZQQ2 1576 aa25.22■■□□□ 1.63
VAPA-204ENST00000577901 MIA2Q96PC5 1412 aa25.17■■□□□ 1.62
VAPA-204ENST00000577901 NEURL4Q96JN8 1562 aa25.17■■□□□ 1.62
VAPA-204ENST00000577901 POLR1AO95602 1720 aaPredicted RBP25.17■■□□□ 1.62
VAPA-204ENST00000577901 NLRP1Q9C000 1473 aa25.15■■□□□ 1.62
VAPA-204ENST00000577901 THEMISQ8N1K5 641 aaPredicted RBP25.14■■□□□ 1.62
VAPA-204ENST00000577901 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.14■■□□□ 1.613e-6■□□□□ 9.1
VAPA-204ENST00000577901 MAST1Q9Y2H9 1570 aa25.14■■□□□ 1.61
VAPA-204ENST00000577901 SOCS7O14512 581 aa25.13■■□□□ 1.61
VAPA-204ENST00000577901 ANKLE2Q86XL3 938 aa25.13■■□□□ 1.61
VAPA-204ENST00000577901 KANK4Q5T7N3 995 aaPredicted RBP25.12■■□□□ 1.61
VAPA-204ENST00000577901 RNF17Q9BXT8 1623 aaKnown RBP25.12■■□□□ 1.61
VAPA-204ENST00000577901 UGGT1Q9NYU2 1555 aa25.11■■□□□ 1.61
VAPA-204ENST00000577901 MAP3K1Q13233 1512 aa25.11■■□□□ 1.61
VAPA-204ENST00000577901 SHANK2Q9UPX8 1470 aa25.1■■□□□ 1.61
VAPA-204ENST00000577901 ABCC3O15438 1527 aa25.1■■□□□ 1.61
VAPA-204ENST00000577901 CPS1P31327 1500 aa25.1■■□□□ 1.61
VAPA-204ENST00000577901 MYOM3Q5VTT5 1437 aa25.08■■□□□ 1.61
VAPA-204ENST00000577901 EIF2AK4Q9P2K8 1649 aaKnown RBP25.08■■□□□ 1.6
VAPA-204ENST00000577901 ZC3H13Q5T200 1668 aaKnown RBP25.07■■□□□ 1.6
VAPA-204ENST00000577901 APLP2Q06481 763 aa25.07■■□□□ 1.6
VAPA-204ENST00000577901 NPHP4O75161 1426 aaPredicted RBP25.06■■□□□ 1.6
VAPA-204ENST00000577901 DEPDC5O75140 1603 aa25.05■■□□□ 1.6
VAPA-204ENST00000577901 MED14O60244 1454 aa25.05■■□□□ 1.6
VAPA-204ENST00000577901 FOXD1Q16676 465 aa25.04■■□□□ 1.6
VAPA-204ENST00000577901 VWDEQ8N2E2 1590 aa25.04■■□□□ 1.6
VAPA-204ENST00000577901 TOM1O60784 492 aa25.03■■□□□ 1.6
VAPA-204ENST00000577901 MROH1Q8NDA8 1641 aa25.03■■□□□ 1.6
VAPA-204ENST00000577901 SCAF1Q9H7N4 1312 aaKnown RBP25.03■■□□□ 1.6
VAPA-204ENST00000577901 ERVK-7P63135 1459 aa25.02■■□□□ 1.6
VAPA-204ENST00000577901 PIP4K2BP78356 416 aa25.02■■□□□ 1.6
VAPA-204ENST00000577901 DUOX2Q9NRD8 1548 aa25.01■■□□□ 1.59
VAPA-204ENST00000577901 IQGAP1P46940 1657 aa24.98■■□□□ 1.59
VAPA-204ENST00000577901 HSPA1LP34931 641 aa24.98■■□□□ 1.59
VAPA-204ENST00000577901 CEP152O94986 1710 aa24.97■■□□□ 1.59
VAPA-204ENST00000577901 KIF15Q9NS87 1388 aa24.95■■□□□ 1.59
VAPA-204ENST00000577901 ABCC5O15440 1437 aa24.94■■□□□ 1.58
VAPA-204ENST00000577901 RRP7BPQ9NSQ0 103 aa24.93■■□□□ 1.58
VAPA-204ENST00000577901 ERBINQ96RT1 1412 aa24.92■■□□□ 1.58
VAPA-204ENST00000577901 PTPN23Q9H3S7 1636 aa24.91■■□□□ 1.58
VAPA-204ENST00000577901 UBR1Q8IWV7 1749 aa24.91■■□□□ 1.58
VAPA-204ENST00000577901 PRDM15P57071 1507 aaPredicted RBP24.91■■□□□ 1.58
VAPA-204ENST00000577901 CROCC2H7BZ55 1655 aa24.91■■□□□ 1.58
VAPA-204ENST00000577901 ARHGAP31Q2M1Z3 1444 aa24.9■■□□□ 1.58
VAPA-204ENST00000577901 ALKQ9UM73 1620 aa24.88■■□□□ 1.57
VAPA-204ENST00000577901 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.88■■□□□ 1.575e-10■□□□□ 10.1
VAPA-204ENST00000577901 SCAF11Q99590 1463 aaKnown RBP24.88■■□□□ 1.57
VAPA-204ENST00000577901 STRCP1A6NGW2 1772 aa24.88■■□□□ 1.57
VAPA-204ENST00000577901 DAPK1P53355 1430 aa24.87■■□□□ 1.57
VAPA-204ENST00000577901 LRRC7Q96NW7 1537 aa24.87■■□□□ 1.57
VAPA-204ENST00000577901 CFAP65Q6ZU64 1925 aaKnown RBP24.86■■□□□ 1.57
VAPA-204ENST00000577901 MED1Q15648 1581 aaPredicted RBP24.85■■□□□ 1.57
VAPA-204ENST00000577901 TXNDC2Q86VQ3 553 aa24.85■■□□□ 1.57
VAPA-204ENST00000577901 SYNMO15061 1565 aa24.84■■□□□ 1.57
VAPA-204ENST00000577901 ARHGAP23Q9P227 1491 aa24.84■■□□□ 1.57
VAPA-204ENST00000577901 LTKP29376 864 aa24.84■■□□□ 1.57
VAPA-204ENST00000577901 SLIT1O75093 1534 aa24.84■■□□□ 1.57
VAPA-204ENST00000577901 FGD6Q6ZV73 1430 aa24.84■■□□□ 1.57
VAPA-204ENST00000577901 KANK1Q14678 1352 aa24.83■■□□□ 1.57
VAPA-204ENST00000577901 EID1Q9Y6B2 187 aa24.8■■□□□ 1.56
VAPA-204ENST00000577901 ANKRD30AQ9BXX3 1397 aa24.8■■□□□ 1.56
VAPA-204ENST00000577901 CHIC2Q9UKJ5 165 aa24.79■■□□□ 1.56
VAPA-204ENST00000577901 PIK3C2BO00750 1634 aa24.78■■□□□ 1.56
VAPA-204ENST00000577901 STAG3Q9UJ98 1225 aa24.77■■□□□ 1.56
VAPA-204ENST00000577901 TMEM2Q9UHN6 1383 aa24.76■■□□□ 1.55
VAPA-204ENST00000577901 LMTK2Q8IWU2 1503 aa24.76■■□□□ 1.55
VAPA-204ENST00000577901 IDI1Q13907 227 aa24.73■■□□□ 1.55
VAPA-204ENST00000577901 EFCAB6Q5THR3 1501 aa24.71■■□□□ 1.55
VAPA-204ENST00000577901 KDM5AP29375 1690 aaKnown RBP24.7■■□□□ 1.54
VAPA-204ENST00000577901 ADGRL2O95490 1459 aa24.68■■□□□ 1.54
VAPA-204ENST00000577901 NOS1P29475 1434 aa24.67■■□□□ 1.54
VAPA-204ENST00000577901 XIRP1Q702N8 1843 aaKnown RBP24.65■■□□□ 1.54
VAPA-204ENST00000577901 FAM50AQ14320 339 aaKnown RBP24.65■■□□□ 1.54
VAPA-204ENST00000577901 ADGRB3O60242 1522 aa24.63■■□□□ 1.53
VAPA-204ENST00000577901 SLC26A8Q96RN1 970 aa24.63■■□□□ 1.53
VAPA-204ENST00000577901 TET3O43151 1660 aa24.62■■□□□ 1.53
VAPA-204ENST00000577901 KCNA6P17658 529 aa24.62■■□□□ 1.53
VAPA-204ENST00000577901 SLC52A1Q9NWF4 448 aa24.62■■□□□ 1.53
VAPA-204ENST00000577901 TMEM94Q12767 1356 aa24.61■■□□□ 1.53
VAPA-204ENST00000577901 ANKRD50Q9ULJ7 1429 aa24.61■■□□□ 1.53
VAPA-204ENST00000577901 RPRD2Q5VT52 1461 aaKnown RBP24.58■■□□□ 1.53
VAPA-204ENST00000577901 FAM135BQ49AJ0 1406 aa24.58■■□□□ 1.53
VAPA-204ENST00000577901 PROSER2Q86WR7 435 aaPredicted RBP24.57■■□□□ 1.52
VAPA-204ENST00000577901 BCANQ96GW7 911 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms