RNA–Protein interactions for RNA: ENST00000577901.5

VAPA-204, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 917 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-204ENST00000577901 NISCHQ9Y2I1 1504 aa39.95■■■■□ 3.99
VAPA-204ENST00000577901 ABCC9O60706 1549 aa36.04■■■■□ 3.36
VAPA-204ENST00000577901 CCDC180Q9P1Z9 1646 aa35.88■■■■□ 3.33
VAPA-204ENST00000577901 RB1CC1Q8TDY2 1594 aa34.23■■■■□ 3.07
VAPA-204ENST00000577901 NACADO15069 1562 aa33.97■■■■□ 3.03
VAPA-204ENST00000577901 DNAJC5BQ9UF47 199 aa33.93■■■■□ 3.02
VAPA-204ENST00000577901 DCAF8L2P0C7V8 631 aa33.81■■■■□ 3
VAPA-204ENST00000577901 PABPN1Q86U42 306 aaKnown RBP eCLIP33.55■■■□□ 2.96
VAPA-204ENST00000577901 MYO15BQ96JP2 1530 aa33.46■■■□□ 2.95
VAPA-204ENST00000577901 UNC13AQ9UPW8 1703 aa33.42■■■□□ 2.94
VAPA-204ENST00000577901 BICRAQ9NZM4 1560 aa33.24■■■□□ 2.91
VAPA-204ENST00000577901 ZCCHC6Q5VYS8 1495 aaKnown RBP33.07■■■□□ 2.88
VAPA-204ENST00000577901 DCAF1Q9Y4B6 1507 aa32.98■■■□□ 2.87
VAPA-204ENST00000577901 SHROOM4Q9ULL8 1493 aa32.78■■■□□ 2.84
VAPA-204ENST00000577901 SCRIBQ14160 1630 aa32.71■■■□□ 2.83
VAPA-204ENST00000577901 CC2D2AQ9P2K1 1620 aa32.53■■■□□ 2.8
VAPA-204ENST00000577901 CECR2Q9BXF3 1484 aa32.48■■■□□ 2.79
VAPA-204ENST00000577901 EIF4G1Q04637 1599 aaKnown RBP32.44■■■□□ 2.78
VAPA-204ENST00000577901 NCAPD3P42695 1498 aa31.38■■■□□ 2.61
VAPA-204ENST00000577901 DNAJC5Q9H3Z4 198 aa31.26■■■□□ 2.59
VAPA-204ENST00000577901 ATAD2BQ9ULI0 1458 aa31.26■■■□□ 2.59
VAPA-204ENST00000577901 AEBP2Q6ZN18 517 aaPredicted RBP31.22■■■□□ 2.59
VAPA-204ENST00000577901 SMARCA4P51532 1647 aa31.18■■■□□ 2.58
VAPA-204ENST00000577901 SMARCA2P51531 1590 aa31.16■■■□□ 2.58
VAPA-204ENST00000577901 ERCC6Q03468 1493 aa31.13■■■□□ 2.57
VAPA-204ENST00000577901 CUX2O14529 1486 aa31.11■■■□□ 2.57
VAPA-204ENST00000577901 HMGXB3Q12766 1538 aa31.11■■■□□ 2.57
VAPA-204ENST00000577901 BAZ1AQ9NRL2 1556 aaPredicted RBP31.01■■■□□ 2.56
VAPA-204ENST00000577901 BAZ1BQ9UIG0 1483 aaKnown RBP30.95■■■□□ 2.54
VAPA-204ENST00000577901 NESP48681 1621 aa30.91■■■□□ 2.54
VAPA-204ENST00000577901 PEG3Q9GZU2 1588 aa30.88■■■□□ 2.53
VAPA-204ENST00000577901 MROH2BQ7Z745 1585 aa30.78■■■□□ 2.52
VAPA-204ENST00000577901 LAMC3Q9Y6N6 1575 aa30.67■■■□□ 2.5
VAPA-204ENST00000577901 THOC2Q8NI27 1593 aaKnown RBP30.62■■■□□ 2.49
VAPA-204ENST00000577901 PDS5BQ9NTI5 1447 aa30.53■■■□□ 2.48
VAPA-204ENST00000577901 KIF21AQ7Z4S6 1674 aa30.49■■■□□ 2.47
VAPA-204ENST00000577901 CADPSQ9ULU8 1353 aa30.41■■■□□ 2.46
VAPA-204ENST00000577901 WIZO95785 1651 aa30.39■■■□□ 2.46
VAPA-204ENST00000577901 MRC2Q9UBG0 1479 aa30.25■■■□□ 2.43
VAPA-204ENST00000577901 WDR62O43379 1518 aa30.18■■■□□ 2.42
VAPA-204ENST00000577901 CEP164Q9UPV0 1460 aa30.12■■■□□ 2.41
VAPA-204ENST00000577901 RSF1Q96T23 1441 aaPredicted RBP30.1■■■□□ 2.41
VAPA-204ENST00000577901 FANCD2Q9BXW9 1451 aa30.07■■■□□ 2.4
VAPA-204ENST00000577901 CFTRP13569 1480 aa30.04■■■□□ 2.4
VAPA-204ENST00000577901 TOP2AP11388 1531 aaKnown RBP30.01■■■□□ 2.4
VAPA-204ENST00000577901 TRIM41Q8WV44 630 aa29.84■■■□□ 2.37
VAPA-204ENST00000577901 URB2Q14146 1524 aaKnown RBP29.83■■■□□ 2.37
VAPA-204ENST00000577901 CCDC88BA6NC98 1476 aa29.69■■■□□ 2.34
VAPA-204ENST00000577901 OSCARQ8IYS5 282 aa29.68■■■□□ 2.34
VAPA-204ENST00000577901 PRDM2Q13029 1718 aa29.68■■■□□ 2.34
VAPA-204ENST00000577901 IFT140Q96RY7 1462 aa29.52■■■□□ 2.32
VAPA-204ENST00000577901 TOPBP1Q92547 1522 aa29.48■■■□□ 2.31
VAPA-204ENST00000577901 ZNF608Q9ULD9 1512 aaPredicted RBP29.48■■■□□ 2.31
VAPA-204ENST00000577901 ABCC8Q09428 1581 aa29.42■■■□□ 2.3
VAPA-204ENST00000577901 DNMBPQ6XZF7 1577 aa29.35■■■□□ 2.29
VAPA-204ENST00000577901 EIF4G3O43432 1585 aaKnown RBP29.3■■■□□ 2.28
VAPA-204ENST00000577901 RIMBP3CA6NJZ7 1639 aa29.29■■■□□ 2.28
VAPA-204ENST00000577901 RIMBP3BA6NNM3 1639 aa29.29■■■□□ 2.28
VAPA-204ENST00000577901 RIMBP3Q9UFD9 1639 aa29.29■■■□□ 2.28
VAPA-204ENST00000577901 CHIC1Q5VXU3 224 aa29.25■■■□□ 2.27
VAPA-204ENST00000577901 TARBP1Q13395 1621 aaKnown RBP29.22■■■□□ 2.27
VAPA-204ENST00000577901 AQRO60306 1485 aaKnown RBP eCLIP29.21■■■□□ 2.279e-10■■■□□ 17.5
VAPA-204ENST00000577901 ARHGEF11O15085 1522 aa29.19■■■□□ 2.26
VAPA-204ENST00000577901 POLA1P09884 1462 aaPredicted RBP29.17■■■□□ 2.26
VAPA-204ENST00000577901 CHD1O14646 1710 aa29.08■■■□□ 2.25
VAPA-204ENST00000577901 RAD54L2Q9Y4B4 1467 aa29.08■■■□□ 2.25
VAPA-204ENST00000577901 FBLN2P98095 1184 aa29.06■■■□□ 2.24
VAPA-204ENST00000577901 SOGA1O94964 1423 aa29.05■■■□□ 2.24
VAPA-204ENST00000577901 TDRD9Q8NDG6 1382 aaKnown RBP29.01■■■□□ 2.24
VAPA-204ENST00000577901 CYB5RLQ6IPT4 315 aa29.01■■■□□ 2.23
VAPA-204ENST00000577901 FGD5Q6ZNL6 1462 aa28.97■■■□□ 2.23
VAPA-204ENST00000577901 CUX1P39880 1505 aa28.93■■■□□ 2.22
VAPA-204ENST00000577901 WDR97A6NE52 1622 aa28.91■■■□□ 2.22
VAPA-204ENST00000577901 SNAPC4Q5SXM2 1469 aa28.91■■■□□ 2.22
VAPA-204ENST00000577901 ARAP1Q96P48 1450 aa28.9■■■□□ 2.22
VAPA-204ENST00000577901 CHMP7Q8WUX9 453 aaPredicted RBP28.82■■■□□ 2.2
VAPA-204ENST00000577901 MAGI1Q96QZ7 1491 aaPredicted RBP28.82■■■□□ 2.2
VAPA-204ENST00000577901 GRIN2BQ13224 1484 aa28.81■■■□□ 2.2
VAPA-204ENST00000577901 CLASP1Q7Z460 1538 aa28.78■■■□□ 2.2
VAPA-204ENST00000577901 SYNJ1O43426 1573 aa28.75■■■□□ 2.19
VAPA-204ENST00000577901 TRHP20396 242 aaPredicted RBP28.73■■■□□ 2.19
VAPA-204ENST00000577901 SYNJ2O15056 1496 aa28.72■■■□□ 2.19
VAPA-204ENST00000577901 SUPT5HO00267 1087 aaKnown RBP28.69■■■□□ 2.18
VAPA-204ENST00000577901 GAPVD1Q14C86 1478 aa28.69■■■□□ 2.18
VAPA-204ENST00000577901 PBRM1Q86U86 1689 aa28.65■■■□□ 2.18
VAPA-204ENST00000577901 ABCA10Q8WWZ4 1543 aa28.64■■■□□ 2.17
VAPA-204ENST00000577901 ABCA5Q8WWZ7 1642 aa28.6■■■□□ 2.17
VAPA-204ENST00000577901 WRNQ14191 1432 aaPredicted RBP eCLIP28.51■■■□□ 2.15
VAPA-204ENST00000577901 GRIN2AQ12879 1464 aa28.44■■■□□ 2.14
VAPA-204ENST00000577901 TOP2BQ02880 1626 aa28.42■■■□□ 2.14
VAPA-204ENST00000577901 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
VAPA-204ENST00000577901 ADAMTS12P58397 1594 aa28.39■■■□□ 2.14
VAPA-204ENST00000577901 NUP160Q12769 1436 aa28.35■■■□□ 2.13
VAPA-204ENST00000577901 CEP170Q5SW79 1584 aa28.33■■■□□ 2.13
VAPA-204ENST00000577901 FHAD1B1AJZ9 1412 aa28.33■■■□□ 2.13
VAPA-204ENST00000577901 ERCC6L2Q5T890 1561 aa28.33■■■□□ 2.12
VAPA-204ENST00000577901 ERICH3Q5RHP9 1530 aa28.28■■■□□ 2.12
VAPA-204ENST00000577901 SHROOM2Q13796 1616 aa28.21■■■□□ 2.11
VAPA-204ENST00000577901 PRG4Q92954 1404 aaPredicted RBP28.09■■■□□ 2.09
VAPA-204ENST00000577901 JPH4Q96JJ6 628 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms