RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 KIF3BO15066 747 aa28.23■■■□□ 2.11
CLK3-221ENST00000568139 CAMSAP2Q08AD1 1489 aa28.22■■■□□ 2.11
CLK3-221ENST00000568139 FAM135AQ9P2D6 1515 aa28.22■■■□□ 2.11
CLK3-221ENST00000568139 UBAP1LF5GYI3 381 aa28.19■■■□□ 2.1
CLK3-221ENST00000568139 SOCS7O14512 581 aa28.19■■■□□ 2.1
CLK3-221ENST00000568139 FBXO31Q5XUX0 539 aaPredicted RBP28.19■■■□□ 2.1
CLK3-221ENST00000568139 KDM5DQ9BY66 1539 aa28.18■■■□□ 2.1
CLK3-221ENST00000568139 TNRQ92752 1358 aa28.18■■■□□ 2.1
CLK3-221ENST00000568139 PZPP20742 1482 aa28.18■■■□□ 2.1
CLK3-221ENST00000568139 ARHGEF5Q12774 1597 aa28.15■■■□□ 2.1
CLK3-221ENST00000568139 WASHC2CQ9Y4E1 1318 aa28.15■■■□□ 2.1
CLK3-221ENST00000568139 POLR1AO95602 1720 aaPredicted RBP28.15■■■□□ 2.1
CLK3-221ENST00000568139 NEURL4Q96JN8 1562 aa28.11■■■□□ 2.09
CLK3-221ENST00000568139 TSPY4P0CV99 314 aa28.11■■■□□ 2.09
CLK3-221ENST00000568139 TSPY10P0CW01 314 aa28.11■■■□□ 2.09
CLK3-221ENST00000568139 MIA2Q96PC5 1412 aa28.09■■■□□ 2.09
CLK3-221ENST00000568139 NLRP1Q9C000 1473 aa28.07■■■□□ 2.08
CLK3-221ENST00000568139 THEMISQ8N1K5 641 aaPredicted RBP28.06■■■□□ 2.08
CLK3-221ENST00000568139 CPS1P31327 1500 aa28.05■■■□□ 2.08
CLK3-221ENST00000568139 LRRC9Q6ZRR7 1453 aa28.05■■■□□ 2.08
CLK3-221ENST00000568139 ANKLE2Q86XL3 938 aa28.05■■■□□ 2.08
CLK3-221ENST00000568139 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.05■■■□□ 2.08
CLK3-221ENST00000568139 SHANK2Q9UPX8 1470 aa28.04■■■□□ 2.08
CLK3-221ENST00000568139 RNF17Q9BXT8 1623 aaKnown RBP28.03■■■□□ 2.08
CLK3-221ENST00000568139 UGGT1Q9NYU2 1555 aa28.03■■■□□ 2.08
CLK3-221ENST00000568139 MAST1Q9Y2H9 1570 aa28.03■■■□□ 2.08
CLK3-221ENST00000568139 VPS8Q8N3P4 1428 aa28.01■■■□□ 2.08
CLK3-221ENST00000568139 DEPDC5O75140 1603 aa28■■■□□ 2.07
CLK3-221ENST00000568139 MED14O60244 1454 aa28■■■□□ 2.07
CLK3-221ENST00000568139 VWDEQ8N2E2 1590 aa27.98■■■□□ 2.07
CLK3-221ENST00000568139 ABCC3O15438 1527 aa27.97■■■□□ 2.07
CLK3-221ENST00000568139 ZC3H13Q5T200 1668 aaKnown RBP27.97■■■□□ 2.07
CLK3-221ENST00000568139 TOM1O60784 492 aa27.97■■■□□ 2.07
CLK3-221ENST00000568139 EIF2AK4Q9P2K8 1649 aaKnown RBP27.96■■■□□ 2.07
CLK3-221ENST00000568139 NPHP4O75161 1426 aaPredicted RBP27.96■■■□□ 2.07
CLK3-221ENST00000568139 MAP3K1Q13233 1512 aa27.95■■■□□ 2.06
CLK3-221ENST00000568139 KANK4Q5T7N3 995 aaPredicted RBP27.94■■■□□ 2.06
CLK3-221ENST00000568139 HSPA1LP34931 641 aa27.92■■■□□ 2.06
CLK3-221ENST00000568139 PIP4K2BP78356 416 aa27.92■■■□□ 2.06
CLK3-221ENST00000568139 MROH1Q8NDA8 1641 aa27.92■■■□□ 2.06
CLK3-221ENST00000568139 LOC105371045A0A1W2PR82 267 aa27.91■■■□□ 2.06
CLK3-221ENST00000568139 SCAF1Q9H7N4 1312 aaKnown RBP27.91■■■□□ 2.06
CLK3-221ENST00000568139 IQGAP1P46940 1657 aa27.91■■■□□ 2.06
CLK3-221ENST00000568139 ERVK-7P63135 1459 aa27.9■■■□□ 2.06
CLK3-221ENST00000568139 MYOM3Q5VTT5 1437 aa27.9■■■□□ 2.06
CLK3-221ENST00000568139 CFAP65Q6ZU64 1925 aaKnown RBP27.88■■■□□ 2.05
CLK3-221ENST00000568139 CEP152O94986 1710 aa27.87■■■□□ 2.05
CLK3-221ENST00000568139 DUOX2Q9NRD8 1548 aa27.86■■■□□ 2.05
CLK3-221ENST00000568139 ALKQ9UM73 1620 aa27.85■■■□□ 2.05
CLK3-221ENST00000568139 STRCP1A6NGW2 1772 aa27.84■■■□□ 2.05
CLK3-221ENST00000568139 UBR1Q8IWV7 1749 aa27.82■■■□□ 2.04
CLK3-221ENST00000568139 MED1Q15648 1581 aaPredicted RBP27.82■■■□□ 2.04
CLK3-221ENST00000568139 LRRC7Q96NW7 1537 aa27.79■■■□□ 2.04
CLK3-221ENST00000568139 ARHGAP31Q2M1Z3 1444 aa27.78■■■□□ 2.04
CLK3-221ENST00000568139 PRDM15P57071 1507 aaPredicted RBP27.77■■■□□ 2.04
CLK3-221ENST00000568139 KIF15Q9NS87 1388 aa27.76■■■□□ 2.03
CLK3-221ENST00000568139 SYNMO15061 1565 aa27.76■■■□□ 2.03
CLK3-221ENST00000568139 ABCC5O15440 1437 aa27.75■■■□□ 2.03
CLK3-221ENST00000568139 CROCC2H7BZ55 1655 aa27.75■■■□□ 2.03
CLK3-221ENST00000568139 SCAF11Q99590 1463 aaKnown RBP27.75■■■□□ 2.03
CLK3-221ENST00000568139 ARHGAP23Q9P227 1491 aa27.75■■■□□ 2.03
CLK3-221ENST00000568139 ERBINQ96RT1 1412 aa27.75■■■□□ 2.03
CLK3-221ENST00000568139 SLIT1O75093 1534 aa27.73■■■□□ 2.03
CLK3-221ENST00000568139 LTKP29376 864 aa27.73■■■□□ 2.03
CLK3-221ENST00000568139 PTPN23Q9H3S7 1636 aa27.72■■■□□ 2.03
CLK3-221ENST00000568139 RRP7BPQ9NSQ0 103 aa27.72■■■□□ 2.03
CLK3-221ENST00000568139 TXNDC2Q86VQ3 553 aa27.7■■■□□ 2.02
CLK3-221ENST00000568139 DAPK1P53355 1430 aa27.67■■■□□ 2.02
CLK3-221ENST00000568139 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.65■■■□□ 2.023e-9■■■■■ 27.4
CLK3-221ENST00000568139 PIK3C2BO00750 1634 aa27.65■■■□□ 2.02
CLK3-221ENST00000568139 EID1Q9Y6B2 187 aa27.64■■■□□ 2.02
CLK3-221ENST00000568139 APLP2Q06481 763 aa27.63■■■□□ 2.01
CLK3-221ENST00000568139 XIRP1Q702N8 1843 aaKnown RBP27.62■■■□□ 2.01
CLK3-221ENST00000568139 KANK1Q14678 1352 aa27.62■■■□□ 2.01
CLK3-221ENST00000568139 FGD6Q6ZV73 1430 aa27.62■■■□□ 2.01
CLK3-221ENST00000568139 TMEM2Q9UHN6 1383 aa27.61■■■□□ 2.01
CLK3-221ENST00000568139 LMTK2Q8IWU2 1503 aa27.61■■■□□ 2.01
CLK3-221ENST00000568139 KDM5AP29375 1690 aaKnown RBP27.6■■■□□ 2.01
CLK3-221ENST00000568139 ANKRD30AQ9BXX3 1397 aa27.59■■■□□ 2.01
CLK3-221ENST00000568139 PHF23Q9BUL5 403 aaPredicted RBP27.58■■■□□ 2.01
CLK3-221ENST00000568139 IDI1Q13907 227 aa27.57■■■□□ 2
CLK3-221ENST00000568139 STAG3Q9UJ98 1225 aa27.57■■■□□ 2
CLK3-221ENST00000568139 SENP3Q9H4L4 574 aaPredicted RBP27.56■■■□□ 2
CLK3-221ENST00000568139 CHIC2Q9UKJ5 165 aa27.56■■■□□ 2
CLK3-221ENST00000568139 EFCAB6Q5THR3 1501 aa27.56■■■□□ 2
CLK3-221ENST00000568139 NOS1P29475 1434 aa27.52■■■□□ 2
CLK3-221ENST00000568139 TET3O43151 1660 aa27.5■■□□□ 1.99
CLK3-221ENST00000568139 KCNA6P17658 529 aa27.49■■□□□ 1.99
CLK3-221ENST00000568139 ADGRL2O95490 1459 aa27.48■■□□□ 1.99
CLK3-221ENST00000568139 FAM135BQ49AJ0 1406 aa27.48■■□□□ 1.99
CLK3-221ENST00000568139 TMEM94Q12767 1356 aa27.46■■□□□ 1.99
CLK3-221ENST00000568139 SLC52A1Q9NWF4 448 aa27.45■■□□□ 1.98
CLK3-221ENST00000568139 ADGRB3O60242 1522 aa27.45■■□□□ 1.98
CLK3-221ENST00000568139 SLC26A8Q96RN1 970 aa27.44■■□□□ 1.98
CLK3-221ENST00000568139 PROSER2Q86WR7 435 aaPredicted RBP27.41■■□□□ 1.98
CLK3-221ENST00000568139 RGS17Q9UGC6 210 aaPredicted RBP27.41■■□□□ 1.98
CLK3-221ENST00000568139 RPRD2Q5VT52 1461 aaKnown RBP27.4■■□□□ 1.98
CLK3-221ENST00000568139 NWD1Q149M9 1564 aa27.39■■□□□ 1.97
CLK3-221ENST00000568139 ANKRD50Q9ULJ7 1429 aa27.38■■□□□ 1.97
CLK3-221ENST00000568139 NKTRP30414 1462 aaKnown RBP27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms