RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LTBP4Q8N2S1 1624 aa27.11■■□□□ 1.93
CLN3-216ENST00000565316 NCKAP5LQ9HCH0 1330 aa27.09■■□□□ 1.93
CLN3-216ENST00000565316 PKD2Q13563 968 aa27.09■■□□□ 1.93
CLN3-216ENST00000565316 KDM5DQ9BY66 1539 aa27.08■■□□□ 1.93
CLN3-216ENST00000565316 MIA2Q96PC5 1412 aa27.08■■□□□ 1.93
CLN3-216ENST00000565316 TCOF1Q13428 1488 aaKnown RBP27.07■■□□□ 1.92
CLN3-216ENST00000565316 MYOM3Q5VTT5 1437 aa27.07■■□□□ 1.92
CLN3-216ENST00000565316 A2ML1A8K2U0 1454 aa27.07■■□□□ 1.92
CLN3-216ENST00000565316 MAST1Q9Y2H9 1570 aa27.06■■□□□ 1.92
CLN3-216ENST00000565316 PZPP20742 1482 aa27.06■■□□□ 1.92
CLN3-216ENST00000565316 WASHC2CQ9Y4E1 1318 aa27.05■■□□□ 1.92
CLN3-216ENST00000565316 FBXO31Q5XUX0 539 aaPredicted RBP27.04■■□□□ 1.92
CLN3-216ENST00000565316 TNRQ92752 1358 aa27.03■■□□□ 1.92
CLN3-216ENST00000565316 IQSEC2Q5JU85 1478 aa27.02■■□□□ 1.92
CLN3-216ENST00000565316 DNMT1P26358 1616 aaKnown RBP27.01■■□□□ 1.91
CLN3-216ENST00000565316 RNF17Q9BXT8 1623 aaKnown RBP26.98■■□□□ 1.91
CLN3-216ENST00000565316 ZNF335Q9H4Z2 1342 aaPredicted RBP26.95■■□□□ 1.91
CLN3-216ENST00000565316 EIF2AK4Q9P2K8 1649 aaKnown RBP26.93■■□□□ 1.9
CLN3-216ENST00000565316 ABCC3O15438 1527 aa26.92■■□□□ 1.9
CLN3-216ENST00000565316 NLRP1Q9C000 1473 aa26.92■■□□□ 1.9
CLN3-216ENST00000565316 APLP2Q06481 763 aa26.9■■□□□ 1.9
CLN3-216ENST00000565316 DUOX2Q9NRD8 1548 aa26.9■■□□□ 1.9
CLN3-216ENST00000565316 MROH1Q8NDA8 1641 aa26.89■■□□□ 1.89
CLN3-216ENST00000565316 SHANK2Q9UPX8 1470 aa26.88■■□□□ 1.89
CLN3-216ENST00000565316 ZC3H13Q5T200 1668 aaKnown RBP26.88■■□□□ 1.89
CLN3-216ENST00000565316 ABCC5O15440 1437 aa26.88■■□□□ 1.89
CLN3-216ENST00000565316 THEMISQ8N1K5 641 aaPredicted RBP26.88■■□□□ 1.89
CLN3-216ENST00000565316 NEURL4Q96JN8 1562 aa26.86■■□□□ 1.89
CLN3-216ENST00000565316 SPATA31D1Q6ZQQ2 1576 aa26.85■■□□□ 1.89
CLN3-216ENST00000565316 PTPN23Q9H3S7 1636 aa26.85■■□□□ 1.89
CLN3-216ENST00000565316 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.84■■□□□ 1.89
CLN3-216ENST00000565316 KIF15Q9NS87 1388 aa26.84■■□□□ 1.89
CLN3-216ENST00000565316 ANKLE2Q86XL3 938 aa26.84■■□□□ 1.89
CLN3-216ENST00000565316 UGGT1Q9NYU2 1555 aa26.84■■□□□ 1.89
CLN3-216ENST00000565316 POLR1AO95602 1720 aaPredicted RBP26.83■■□□□ 1.89
CLN3-216ENST00000565316 FGD6Q6ZV73 1430 aa26.83■■□□□ 1.89
CLN3-216ENST00000565316 ERVK-7P63135 1459 aa26.82■■□□□ 1.88
CLN3-216ENST00000565316 CROCC2H7BZ55 1655 aa26.81■■□□□ 1.88
CLN3-216ENST00000565316 DAPK1P53355 1430 aa26.8■■□□□ 1.88
CLN3-216ENST00000565316 ERBINQ96RT1 1412 aa26.8■■□□□ 1.88
CLN3-216ENST00000565316 MED14O60244 1454 aa26.79■■□□□ 1.88
CLN3-216ENST00000565316 RRP7BPQ9NSQ0 103 aa26.79■■□□□ 1.88
CLN3-216ENST00000565316 DEPDC5O75140 1603 aa26.77■■□□□ 1.88
CLN3-216ENST00000565316 PRDM15P57071 1507 aaPredicted RBP26.77■■□□□ 1.88
CLN3-216ENST00000565316 UBAP1LF5GYI3 381 aa26.76■■□□□ 1.87
CLN3-216ENST00000565316 ARHGAP31Q2M1Z3 1444 aa26.76■■□□□ 1.87
CLN3-216ENST00000565316 CEP152O94986 1710 aa26.75■■□□□ 1.87
CLN3-216ENST00000565316 NPHP4O75161 1426 aaPredicted RBP26.74■■□□□ 1.87
CLN3-216ENST00000565316 CPS1P31327 1500 aa26.73■■□□□ 1.87
CLN3-216ENST00000565316 VWDEQ8N2E2 1590 aa26.71■■□□□ 1.87
CLN3-216ENST00000565316 ANKRD30AQ9BXX3 1397 aa26.71■■□□□ 1.87
CLN3-216ENST00000565316 DISP3Q9P2K9 1392 aa26.69■■□□□ 1.86
CLN3-216ENST00000565316 CHIC2Q9UKJ5 165 aa26.67■■□□□ 1.86
CLN3-216ENST00000565316 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.65■■□□□ 1.86
CLN3-216ENST00000565316 IQGAP1P46940 1657 aa26.65■■□□□ 1.86
CLN3-216ENST00000565316 KANK1Q14678 1352 aa26.65■■□□□ 1.86
CLN3-216ENST00000565316 UBR1Q8IWV7 1749 aa26.65■■□□□ 1.86
CLN3-216ENST00000565316 LMTK2Q8IWU2 1503 aa26.64■■□□□ 1.85
CLN3-216ENST00000565316 CFAP65Q6ZU64 1925 aaKnown RBP26.63■■□□□ 1.85
CLN3-216ENST00000565316 ADGRL2O95490 1459 aa26.63■■□□□ 1.85
CLN3-216ENST00000565316 ARHGAP23Q9P227 1491 aa26.63■■□□□ 1.85
CLN3-216ENST00000565316 SLIT1O75093 1534 aa26.61■■□□□ 1.85
CLN3-216ENST00000565316 SCAF11Q99590 1463 aaKnown RBP26.6■■□□□ 1.85
CLN3-216ENST00000565316 TOM1O60784 492 aa26.59■■□□□ 1.85
CLN3-216ENST00000565316 LTKP29376 864 aa26.59■■□□□ 1.85
CLN3-216ENST00000565316 ILDR2Q71H61 639 aa26.58■■□□□ 1.85
CLN3-216ENST00000565316 FAM50AQ14320 339 aaKnown RBP26.56■■□□□ 1.84
CLN3-216ENST00000565316 TXNDC2Q86VQ3 553 aa26.56■■□□□ 1.84
CLN3-216ENST00000565316 PIK3C2BO00750 1634 aa26.53■■□□□ 1.84
CLN3-216ENST00000565316 STRCP1A6NGW2 1772 aa26.53■■□□□ 1.84
CLN3-216ENST00000565316 TMEM2Q9UHN6 1383 aa26.53■■□□□ 1.84
CLN3-216ENST00000565316 LRRC7Q96NW7 1537 aa26.52■■□□□ 1.84
CLN3-216ENST00000565316 IDI1Q13907 227 aa26.52■■□□□ 1.84
CLN3-216ENST00000565316 EID1Q9Y6B2 187 aa26.52■■□□□ 1.84
CLN3-216ENST00000565316 NOS1P29475 1434 aa26.52■■□□□ 1.84
CLN3-216ENST00000565316 EFCAB6Q5THR3 1501 aa26.52■■□□□ 1.84
CLN3-216ENST00000565316 PIP4K2BP78356 416 aa26.51■■□□□ 1.83
CLN3-216ENST00000565316 ANKRD50Q9ULJ7 1429 aa26.51■■□□□ 1.83
CLN3-216ENST00000565316 ALKQ9UM73 1620 aa26.51■■□□□ 1.83
CLN3-216ENST00000565316 KDM5AP29375 1690 aaKnown RBP26.5■■□□□ 1.83
CLN3-216ENST00000565316 SYNMO15061 1565 aa26.49■■□□□ 1.83
CLN3-216ENST00000565316 HSPA1LP34931 641 aa26.49■■□□□ 1.83
CLN3-216ENST00000565316 SCAF1Q9H7N4 1312 aaKnown RBP26.48■■□□□ 1.83
CLN3-216ENST00000565316 STAG3Q9UJ98 1225 aa26.46■■□□□ 1.83
CLN3-216ENST00000565316 SLC52A1Q9NWF4 448 aa26.45■■□□□ 1.83
CLN3-216ENST00000565316 RPRD2Q5VT52 1461 aaKnown RBP26.44■■□□□ 1.82
CLN3-216ENST00000565316 SOCS7O14512 581 aa26.41■■□□□ 1.82
CLN3-216ENST00000565316 ADGRB3O60242 1522 aa26.4■■□□□ 1.82
CLN3-216ENST00000565316 ROCK1Q13464 1354 aa26.4■■□□□ 1.82
CLN3-216ENST00000565316 TET3O43151 1660 aa26.38■■□□□ 1.81
CLN3-216ENST00000565316 UNC13BO14795 1591 aa26.36■■□□□ 1.81
CLN3-216ENST00000565316 KCNA6P17658 529 aa26.33■■□□□ 1.81
CLN3-216ENST00000565316 SLC26A8Q96RN1 970 aa26.31■■□□□ 1.8
CLN3-216ENST00000565316 XIRP1Q702N8 1843 aaKnown RBP26.31■■□□□ 1.8
CLN3-216ENST00000565316 GCC2Q8IWJ2 1684 aa26.3■■□□□ 1.8
CLN3-216ENST00000565316 ZFYVE9O95405 1425 aa26.3■■□□□ 1.8
CLN3-216ENST00000565316 MED1Q15648 1581 aaPredicted RBP26.3■■□□□ 1.8
CLN3-216ENST00000565316 TMEM94Q12767 1356 aa26.27■■□□□ 1.8
CLN3-216ENST00000565316 TMEM131LA2VDJ0 1609 aa26.26■■□□□ 1.79
CLN3-216ENST00000565316 IQGAP3Q86VI3 1631 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms