RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NISCHQ9Y2I1 1504 aa42.9■■■■■ 4.46
CLN3-216ENST00000565316 CCDC180Q9P1Z9 1646 aa38.43■■■■□ 3.74
CLN3-216ENST00000565316 ABCC9O60706 1549 aa38.33■■■■□ 3.73
CLN3-216ENST00000565316 RB1CC1Q8TDY2 1594 aa36.54■■■■□ 3.44
CLN3-216ENST00000565316 NACADO15069 1562 aa36.35■■■■□ 3.41
CLN3-216ENST00000565316 DCAF8L2P0C7V8 631 aa36.08■■■■□ 3.37
CLN3-216ENST00000565316 DNAJC5BQ9UF47 199 aa35.95■■■■□ 3.35
CLN3-216ENST00000565316 MYO15BQ96JP2 1530 aa35.94■■■■□ 3.34
CLN3-216ENST00000565316 PABPN1Q86U42 306 aaKnown RBP eCLIP35.71■■■■□ 3.31
CLN3-216ENST00000565316 UNC13AQ9UPW8 1703 aa35.65■■■■□ 3.3
CLN3-216ENST00000565316 ZCCHC6Q5VYS8 1495 aaKnown RBP35.58■■■■□ 3.29
CLN3-216ENST00000565316 BICRAQ9NZM4 1560 aa35.51■■■■□ 3.27
CLN3-216ENST00000565316 DCAF1Q9Y4B6 1507 aa35.5■■■■□ 3.27
CLN3-216ENST00000565316 SHROOM4Q9ULL8 1493 aa35.08■■■■□ 3.21
CLN3-216ENST00000565316 SCRIBQ14160 1630 aa34.98■■■■□ 3.19
CLN3-216ENST00000565316 CC2D2AQ9P2K1 1620 aa34.63■■■■□ 3.13
CLN3-216ENST00000565316 EIF4G1Q04637 1599 aaKnown RBP34.59■■■■□ 3.13
CLN3-216ENST00000565316 CECR2Q9BXF3 1484 aa34.54■■■■□ 3.12
CLN3-216ENST00000565316 NCAPD3P42695 1498 aa33.59■■■□□ 2.97
CLN3-216ENST00000565316 ATAD2BQ9ULI0 1458 aa33.47■■■□□ 2.95
CLN3-216ENST00000565316 SMARCA4P51532 1647 aa33.42■■■□□ 2.94
CLN3-216ENST00000565316 SMARCA2P51531 1590 aa33.36■■■□□ 2.93
CLN3-216ENST00000565316 HMGXB3Q12766 1538 aa33.32■■■□□ 2.92
CLN3-216ENST00000565316 BAZ1AQ9NRL2 1556 aaPredicted RBP33.28■■■□□ 2.92
CLN3-216ENST00000565316 PEG3Q9GZU2 1588 aa33.15■■■□□ 2.9
CLN3-216ENST00000565316 BAZ1BQ9UIG0 1483 aaKnown RBP33.11■■■□□ 2.89
CLN3-216ENST00000565316 ERCC6Q03468 1493 aa33.07■■■□□ 2.88
CLN3-216ENST00000565316 CUX2O14529 1486 aa33.05■■■□□ 2.88
CLN3-216ENST00000565316 MROH2BQ7Z745 1585 aa33.04■■■□□ 2.88
CLN3-216ENST00000565316 NESP48681 1621 aa32.96■■■□□ 2.87
CLN3-216ENST00000565316 DNAJC5Q9H3Z4 198 aa32.96■■■□□ 2.87
CLN3-216ENST00000565316 LAMC3Q9Y6N6 1575 aa32.76■■■□□ 2.83
CLN3-216ENST00000565316 WIZO95785 1651 aa32.61■■■□□ 2.81
CLN3-216ENST00000565316 THOC2Q8NI27 1593 aaKnown RBP32.61■■■□□ 2.81
CLN3-216ENST00000565316 PDS5BQ9NTI5 1447 aa32.59■■■□□ 2.81
CLN3-216ENST00000565316 CADPSQ9ULU8 1353 aa32.56■■■□□ 2.8
CLN3-216ENST00000565316 KIF21AQ7Z4S6 1674 aa32.49■■■□□ 2.79
CLN3-216ENST00000565316 RSF1Q96T23 1441 aaPredicted RBP32.42■■■□□ 2.78
CLN3-216ENST00000565316 MRC2Q9UBG0 1479 aa32.29■■■□□ 2.76
CLN3-216ENST00000565316 TOP2AP11388 1531 aaKnown RBP32.25■■■□□ 2.75
CLN3-216ENST00000565316 WDR62O43379 1518 aa32.22■■■□□ 2.75
CLN3-216ENST00000565316 CFTRP13569 1480 aa32.21■■■□□ 2.75
CLN3-216ENST00000565316 CEP164Q9UPV0 1460 aa32.16■■■□□ 2.74
CLN3-216ENST00000565316 FANCD2Q9BXW9 1451 aa32.15■■■□□ 2.74
CLN3-216ENST00000565316 CCDC88BA6NC98 1476 aa31.9■■■□□ 2.7
CLN3-216ENST00000565316 URB2Q14146 1524 aaKnown RBP31.89■■■□□ 2.7
CLN3-216ENST00000565316 PRDM2Q13029 1718 aa31.78■■■□□ 2.68
CLN3-216ENST00000565316 TOPBP1Q92547 1522 aa31.55■■■□□ 2.64
CLN3-216ENST00000565316 OSCARQ8IYS5 282 aa31.55■■■□□ 2.64
CLN3-216ENST00000565316 IFT140Q96RY7 1462 aa31.55■■■□□ 2.64
CLN3-216ENST00000565316 ABCC8Q09428 1581 aa31.51■■■□□ 2.63
CLN3-216ENST00000565316 ZNF608Q9ULD9 1512 aaPredicted RBP31.46■■■□□ 2.63
CLN3-216ENST00000565316 TRIM41Q8WV44 630 aa31.45■■■□□ 2.62
CLN3-216ENST00000565316 DNMBPQ6XZF7 1577 aa31.44■■■□□ 2.62
CLN3-216ENST00000565316 TARBP1Q13395 1621 aaKnown RBP31.26■■■□□ 2.6
CLN3-216ENST00000565316 EIF4G3O43432 1585 aaKnown RBP31.26■■■□□ 2.59
CLN3-216ENST00000565316 POLA1P09884 1462 aaPredicted RBP31.24■■■□□ 2.59
CLN3-216ENST00000565316 AQRO60306 1485 aaKnown RBP eCLIP31.2■■■□□ 2.596e-6■■■■□ 25.1
CLN3-216ENST00000565316 RAD54L2Q9Y4B4 1467 aa31.11■■■□□ 2.57
CLN3-216ENST00000565316 SOGA1O94964 1423 aa31.11■■■□□ 2.57
CLN3-216ENST00000565316 RIMBP3CA6NJZ7 1639 aa31.08■■■□□ 2.57
CLN3-216ENST00000565316 RIMBP3BA6NNM3 1639 aa31.08■■■□□ 2.57
CLN3-216ENST00000565316 RIMBP3Q9UFD9 1639 aa31.08■■■□□ 2.57
CLN3-216ENST00000565316 FGD5Q6ZNL6 1462 aa31.04■■■□□ 2.56
CLN3-216ENST00000565316 CUX1P39880 1505 aa31.04■■■□□ 2.56
CLN3-216ENST00000565316 TDRD9Q8NDG6 1382 aaKnown RBP31.02■■■□□ 2.56
CLN3-216ENST00000565316 ARHGEF11O15085 1522 aa31.01■■■□□ 2.56
CLN3-216ENST00000565316 CHD1O14646 1710 aa30.98■■■□□ 2.55
CLN3-216ENST00000565316 WDR97A6NE52 1622 aa30.97■■■□□ 2.55
CLN3-216ENST00000565316 SUPT5HO00267 1087 aaKnown RBP30.97■■■□□ 2.55
CLN3-216ENST00000565316 FBLN2P98095 1184 aa30.93■■■□□ 2.54
CLN3-216ENST00000565316 SNAPC4Q5SXM2 1469 aa30.87■■■□□ 2.53
CLN3-216ENST00000565316 GRIN2BQ13224 1484 aa30.83■■■□□ 2.53
CLN3-216ENST00000565316 MAGI1Q96QZ7 1491 aaPredicted RBP30.82■■■□□ 2.52
CLN3-216ENST00000565316 CYB5RLQ6IPT4 315 aa30.77■■■□□ 2.52
CLN3-216ENST00000565316 CHMP7Q8WUX9 453 aaPredicted RBP30.75■■■□□ 2.51
CLN3-216ENST00000565316 ABCA10Q8WWZ4 1543 aa30.73■■■□□ 2.51
CLN3-216ENST00000565316 ARAP1Q96P48 1450 aa30.73■■■□□ 2.51
CLN3-216ENST00000565316 SYNJ2O15056 1496 aa30.72■■■□□ 2.51
CLN3-216ENST00000565316 GAPVD1Q14C86 1478 aa30.72■■■□□ 2.51
CLN3-216ENST00000565316 CLASP1Q7Z460 1538 aa30.72■■■□□ 2.51
CLN3-216ENST00000565316 SYNJ1O43426 1573 aa30.67■■■□□ 2.5
CLN3-216ENST00000565316 ABCA5Q8WWZ7 1642 aa30.65■■■□□ 2.5
CLN3-216ENST00000565316 PBRM1Q86U86 1689 aa30.63■■■□□ 2.49
CLN3-216ENST00000565316 WRNQ14191 1432 aaPredicted RBP eCLIP30.62■■■□□ 2.49
CLN3-216ENST00000565316 TOP2BQ02880 1626 aa30.56■■■□□ 2.48
CLN3-216ENST00000565316 BIVM-ERCC5R4GMW8 1640 aa30.55■■■□□ 2.48
CLN3-216ENST00000565316 GRIN2AQ12879 1464 aa30.42■■■□□ 2.46
CLN3-216ENST00000565316 ADAMTS12P58397 1594 aa30.4■■■□□ 2.46
CLN3-216ENST00000565316 TRHP20396 242 aaPredicted RBP30.36■■■□□ 2.45
CLN3-216ENST00000565316 FHAD1B1AJZ9 1412 aa30.35■■■□□ 2.45
CLN3-216ENST00000565316 NUP160Q12769 1436 aa30.35■■■□□ 2.45
CLN3-216ENST00000565316 ERICH3Q5RHP9 1530 aa30.34■■■□□ 2.45
CLN3-216ENST00000565316 CEP170Q5SW79 1584 aa30.29■■■□□ 2.44
CLN3-216ENST00000565316 ERCC6L2Q5T890 1561 aa30.21■■■□□ 2.43
CLN3-216ENST00000565316 SHROOM2Q13796 1616 aa30.18■■■□□ 2.42
CLN3-216ENST00000565316 JPH4Q96JJ6 628 aa30.02■■■□□ 2.4
CLN3-216ENST00000565316 PRG4Q92954 1404 aaPredicted RBP30.01■■■□□ 2.4
CLN3-216ENST00000565316 IGF1RP08069 1367 aa30.01■■■□□ 2.39
CLN3-216ENST00000565316 KIF27Q86VH2 1401 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms