RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 KIF3BO15066 747 aa29.89■■■□□ 2.38
NME3-204ENST00000563498 KDM5DQ9BY66 1539 aa29.89■■■□□ 2.38
NME3-204ENST00000563498 SPATA31D1Q6ZQQ2 1576 aa29.88■■■□□ 2.37
NME3-204ENST00000563498 PZPP20742 1482 aa29.87■■■□□ 2.37
NME3-204ENST00000563498 ILDR2Q71H61 639 aa29.86■■■□□ 2.37
NME3-204ENST00000563498 ARHGEF5Q12774 1597 aa29.86■■■□□ 2.37
NME3-204ENST00000563498 TNRQ92752 1358 aa29.85■■■□□ 2.37
NME3-204ENST00000563498 WASHC2CQ9Y4E1 1318 aa29.81■■■□□ 2.36
NME3-204ENST00000563498 UBAP1LF5GYI3 381 aa29.81■■■□□ 2.36
NME3-204ENST00000563498 FBXO31Q5XUX0 539 aaPredicted RBP29.81■■■□□ 2.36
NME3-204ENST00000563498 POLR1AO95602 1720 aaPredicted RBP29.79■■■□□ 2.36
NME3-204ENST00000563498 SOCS7O14512 581 aa29.78■■■□□ 2.36
NME3-204ENST00000563498 TSPY4P0CV99 314 aa29.78■■■□□ 2.36
NME3-204ENST00000563498 TSPY10P0CW01 314 aa29.78■■■□□ 2.36
NME3-204ENST00000563498 NEURL4Q96JN8 1562 aa29.77■■■□□ 2.36
NME3-204ENST00000563498 LRRC9Q6ZRR7 1453 aa29.75■■■□□ 2.35
NME3-204ENST00000563498 NLRP1Q9C000 1473 aa29.75■■■□□ 2.35
NME3-204ENST00000563498 MIA2Q96PC5 1412 aa29.75■■■□□ 2.35
NME3-204ENST00000563498 VPS8Q8N3P4 1428 aa29.74■■■□□ 2.35
NME3-204ENST00000563498 MAST1Q9Y2H9 1570 aa29.73■■■□□ 2.35
NME3-204ENST00000563498 CPS1P31327 1500 aa29.72■■■□□ 2.35
NME3-204ENST00000563498 RNF17Q9BXT8 1623 aaKnown RBP29.71■■■□□ 2.35
NME3-204ENST00000563498 THEMISQ8N1K5 641 aaPredicted RBP29.71■■■□□ 2.35
NME3-204ENST00000563498 ANKLE2Q86XL3 938 aa29.7■■■□□ 2.35
NME3-204ENST00000563498 UGGT1Q9NYU2 1555 aa29.69■■■□□ 2.34
NME3-204ENST00000563498 SHANK2Q9UPX8 1470 aa29.68■■■□□ 2.34
NME3-204ENST00000563498 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.68■■■□□ 2.34
NME3-204ENST00000563498 MAP3K1Q13233 1512 aa29.67■■■□□ 2.34
NME3-204ENST00000563498 ZC3H13Q5T200 1668 aaKnown RBP29.67■■■□□ 2.34
NME3-204ENST00000563498 DEPDC5O75140 1603 aa29.66■■■□□ 2.34
NME3-204ENST00000563498 EIF2AK4Q9P2K8 1649 aaKnown RBP29.66■■■□□ 2.34
NME3-204ENST00000563498 MED14O60244 1454 aa29.66■■■□□ 2.34
NME3-204ENST00000563498 ABCC3O15438 1527 aa29.66■■■□□ 2.34
NME3-204ENST00000563498 VWDEQ8N2E2 1590 aa29.62■■■□□ 2.33
NME3-204ENST00000563498 NPHP4O75161 1426 aaPredicted RBP29.62■■■□□ 2.33
NME3-204ENST00000563498 MYOM3Q5VTT5 1437 aa29.61■■■□□ 2.33
NME3-204ENST00000563498 TOM1O60784 492 aa29.59■■■□□ 2.33
NME3-204ENST00000563498 KANK4Q5T7N3 995 aaPredicted RBP29.58■■■□□ 2.33
NME3-204ENST00000563498 MROH1Q8NDA8 1641 aa29.57■■■□□ 2.32
NME3-204ENST00000563498 ERVK-7P63135 1459 aa29.56■■■□□ 2.32
NME3-204ENST00000563498 IQGAP1P46940 1657 aa29.55■■■□□ 2.32
NME3-204ENST00000563498 DUOX2Q9NRD8 1548 aa29.55■■■□□ 2.32
NME3-204ENST00000563498 LOC105371045A0A1W2PR82 267 aa29.53■■■□□ 2.32
NME3-204ENST00000563498 SCAF1Q9H7N4 1312 aaKnown RBP29.51■■■□□ 2.32
NME3-204ENST00000563498 HSPA1LP34931 641 aa29.51■■■□□ 2.31
NME3-204ENST00000563498 PIP4K2BP78356 416 aa29.51■■■□□ 2.31
NME3-204ENST00000563498 CEP152O94986 1710 aa29.48■■■□□ 2.31
NME3-204ENST00000563498 PRDM15P57071 1507 aaPredicted RBP29.46■■■□□ 2.31
NME3-204ENST00000563498 ARHGAP31Q2M1Z3 1444 aa29.45■■■□□ 2.31
NME3-204ENST00000563498 UBR1Q8IWV7 1749 aa29.45■■■□□ 2.31
NME3-204ENST00000563498 ERBINQ96RT1 1412 aa29.45■■■□□ 2.3
NME3-204ENST00000563498 KIF15Q9NS87 1388 aa29.44■■■□□ 2.3
NME3-204ENST00000563498 ALKQ9UM73 1620 aa29.44■■■□□ 2.3
NME3-204ENST00000563498 CROCC2H7BZ55 1655 aa29.43■■■□□ 2.3
NME3-204ENST00000563498 SYNMO15061 1565 aa29.43■■■□□ 2.3
NME3-204ENST00000563498 ABCC5O15440 1437 aa29.42■■■□□ 2.3
NME3-204ENST00000563498 MED1Q15648 1581 aaPredicted RBP29.42■■■□□ 2.3
NME3-204ENST00000563498 STRCP1A6NGW2 1772 aa29.41■■■□□ 2.3
NME3-204ENST00000563498 LRRC7Q96NW7 1537 aa29.41■■■□□ 2.3
NME3-204ENST00000563498 SCAF11Q99590 1463 aaKnown RBP29.4■■■□□ 2.3
NME3-204ENST00000563498 ARHGAP23Q9P227 1491 aa29.4■■■□□ 2.3
NME3-204ENST00000563498 SLIT1O75093 1534 aa29.39■■■□□ 2.3
NME3-204ENST00000563498 PTPN23Q9H3S7 1636 aa29.38■■■□□ 2.29
NME3-204ENST00000563498 CFAP65Q6ZU64 1925 aaKnown RBP29.37■■■□□ 2.29
NME3-204ENST00000563498 RRP7BPQ9NSQ0 103 aa29.35■■■□□ 2.29
NME3-204ENST00000563498 DAPK1P53355 1430 aa29.35■■■□□ 2.29
NME3-204ENST00000563498 APLP2Q06481 763 aa29.33■■■□□ 2.29
NME3-204ENST00000563498 LTKP29376 864 aa29.32■■■□□ 2.28
NME3-204ENST00000563498 TXNDC2Q86VQ3 553 aa29.32■■■□□ 2.28
NME3-204ENST00000563498 FGD6Q6ZV73 1430 aa29.3■■■□□ 2.28
NME3-204ENST00000563498 KANK1Q14678 1352 aa29.3■■■□□ 2.28
NME3-204ENST00000563498 PIK3C2BO00750 1634 aa29.28■■■□□ 2.28
NME3-204ENST00000563498 EID1Q9Y6B2 187 aa29.28■■■□□ 2.28
NME3-204ENST00000563498 LMTK2Q8IWU2 1503 aa29.28■■■□□ 2.28
NME3-204ENST00000563498 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.27■■■□□ 2.28
NME3-204ENST00000563498 KDM5AP29375 1690 aaKnown RBP29.27■■■□□ 2.28
NME3-204ENST00000563498 TMEM2Q9UHN6 1383 aa29.26■■■□□ 2.28
NME3-204ENST00000563498 ANKRD30AQ9BXX3 1397 aa29.26■■■□□ 2.27
NME3-204ENST00000563498 EFCAB6Q5THR3 1501 aa29.21■■■□□ 2.27
NME3-204ENST00000563498 STAG3Q9UJ98 1225 aa29.2■■■□□ 2.26
NME3-204ENST00000563498 PHF23Q9BUL5 403 aaPredicted RBP29.19■■■□□ 2.26
NME3-204ENST00000563498 XIRP1Q702N8 1843 aaKnown RBP29.18■■■□□ 2.26
NME3-204ENST00000563498 IDI1Q13907 227 aa29.17■■■□□ 2.26
NME3-204ENST00000563498 CHIC2Q9UKJ5 165 aa29.17■■■□□ 2.26
NME3-204ENST00000563498 NOS1P29475 1434 aa29.16■■■□□ 2.26
NME3-204ENST00000563498 ADGRL2O95490 1459 aa29.15■■■□□ 2.26
NME3-204ENST00000563498 TET3O43151 1660 aa29.12■■■□□ 2.25
NME3-204ENST00000563498 ADGRB3O60242 1522 aa29.11■■■□□ 2.25
NME3-204ENST00000563498 SENP3Q9H4L4 574 aaPredicted RBP29.11■■■□□ 2.25
NME3-204ENST00000563498 SLC52A1Q9NWF4 448 aa29.1■■■□□ 2.25
NME3-204ENST00000563498 KCNA6P17658 529 aa29.09■■■□□ 2.25
NME3-204ENST00000563498 FAM135BQ49AJ0 1406 aa29.09■■■□□ 2.25
NME3-204ENST00000563498 TMEM94Q12767 1356 aa29.08■■■□□ 2.25
NME3-204ENST00000563498 RPRD2Q5VT52 1461 aaKnown RBP29.08■■■□□ 2.25
NME3-204ENST00000563498 ANKRD50Q9ULJ7 1429 aa29.03■■■□□ 2.24
NME3-204ENST00000563498 SLC26A8Q96RN1 970 aa29.03■■■□□ 2.24
NME3-204ENST00000563498 NKTRP30414 1462 aaKnown RBP29.03■■■□□ 2.24
NME3-204ENST00000563498 NWD1Q149M9 1564 aa29.02■■■□□ 2.24
NME3-204ENST00000563498 PROSER2Q86WR7 435 aaPredicted RBP29■■■□□ 2.23
NME3-204ENST00000563498 FAM50AQ14320 339 aaKnown RBP28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms