RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RNF39Q9H2S5 420 aa18.52■□□□□ 0.56
USP3-220ENST00000561381 DHX29Q7Z478 1369 aaKnown RBP18.52■□□□□ 0.55
USP3-220ENST00000561381 CCDC141Q6ZP82 1450 aa18.52■□□□□ 0.55
USP3-220ENST00000561381 CAMSAP1Q5T5Y3 1602 aa18.5■□□□□ 0.55
USP3-220ENST00000561381 LRRC9Q6ZRR7 1453 aa18.5■□□□□ 0.55
USP3-220ENST00000561381 KIF3BO15066 747 aa18.49■□□□□ 0.55
USP3-220ENST00000561381 KANK4Q5T7N3 995 aaPredicted RBP18.49■□□□□ 0.55
USP3-220ENST00000561381 MYO3AQ8NEV4 1616 aa18.48■□□□□ 0.55
USP3-220ENST00000561381 NCKAP5LQ9HCH0 1330 aa18.48■□□□□ 0.55
USP3-220ENST00000561381 RSPH4AQ5TD94 716 aa18.47■□□□□ 0.55
USP3-220ENST00000561381 ARHGEF5Q12774 1597 aa18.45■□□□□ 0.54
USP3-220ENST00000561381 CEP170BQ9Y4F5 1589 aaPredicted RBP18.45■□□□□ 0.54
USP3-220ENST00000561381 ZNF142P52746 1687 aaPredicted RBP18.44■□□□□ 0.54
USP3-220ENST00000561381 LTBP4Q8N2S1 1624 aa18.44■□□□□ 0.54
USP3-220ENST00000561381 TSPY4P0CV99 314 aa18.43■□□□□ 0.54
USP3-220ENST00000561381 TSPY10P0CW01 314 aa18.43■□□□□ 0.54
USP3-220ENST00000561381 FBXO31Q5XUX0 539 aaPredicted RBP18.43■□□□□ 0.54
USP3-220ENST00000561381 MAP3K1Q13233 1512 aa18.41■□□□□ 0.54
USP3-220ENST00000561381 PLA2R1Q13018 1463 aa18.4■□□□□ 0.54
USP3-220ENST00000561381 KDM5DQ9BY66 1539 aa18.4■□□□□ 0.54
USP3-220ENST00000561381 WASHC2CQ9Y4E1 1318 aa18.4■□□□□ 0.54
USP3-220ENST00000561381 A2ML1A8K2U0 1454 aa18.39■□□□□ 0.53
USP3-220ENST00000561381 TCOF1Q13428 1488 aaKnown RBP18.39■□□□□ 0.53
USP3-220ENST00000561381 PKD2Q13563 968 aa18.38■□□□□ 0.53
USP3-220ENST00000561381 ZNF335Q9H4Z2 1342 aaPredicted RBP18.38■□□□□ 0.53
USP3-220ENST00000561381 TNRQ92752 1358 aa18.38■□□□□ 0.53
USP3-220ENST00000561381 MYOM3Q5VTT5 1437 aa18.38■□□□□ 0.53
USP3-220ENST00000561381 PZPP20742 1482 aa18.37■□□□□ 0.53
USP3-220ENST00000561381 DNMT1P26358 1616 aaKnown RBP18.37■□□□□ 0.53
USP3-220ENST00000561381 MAST1Q9Y2H9 1570 aa18.36■□□□□ 0.53
USP3-220ENST00000561381 FAM135AQ9P2D6 1515 aa18.35■□□□□ 0.53
USP3-220ENST00000561381 MIA2Q96PC5 1412 aa18.35■□□□□ 0.53
USP3-220ENST00000561381 RNF17Q9BXT8 1623 aaKnown RBP18.31■□□□□ 0.52
USP3-220ENST00000561381 IQSEC2Q5JU85 1478 aa18.31■□□□□ 0.52
USP3-220ENST00000561381 ABCC3O15438 1527 aa18.3■□□□□ 0.52
USP3-220ENST00000561381 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.29■□□□□ 0.52
USP3-220ENST00000561381 MROH1Q8NDA8 1641 aa18.28■□□□□ 0.52
USP3-220ENST00000561381 APLP2Q06481 763 aa18.28■□□□□ 0.52
USP3-220ENST00000561381 NEURL4Q96JN8 1562 aa18.28■□□□□ 0.52
USP3-220ENST00000561381 EIF2AK4Q9P2K8 1649 aaKnown RBP18.27■□□□□ 0.52
USP3-220ENST00000561381 ABCC5O15440 1437 aa18.27■□□□□ 0.52
USP3-220ENST00000561381 NLRP1Q9C000 1473 aa18.26■□□□□ 0.51
USP3-220ENST00000561381 PTPN23Q9H3S7 1636 aa18.26■□□□□ 0.51
USP3-220ENST00000561381 POLR1AO95602 1720 aaPredicted RBP18.26■□□□□ 0.51
USP3-220ENST00000561381 DUOX2Q9NRD8 1548 aa18.25■□□□□ 0.51
USP3-220ENST00000561381 THEMISQ8N1K5 641 aaPredicted RBP18.25■□□□□ 0.51
USP3-220ENST00000561381 RRP7BPQ9NSQ0 103 aa18.25■□□□□ 0.51
USP3-220ENST00000561381 KIF15Q9NS87 1388 aa18.25■□□□□ 0.51
USP3-220ENST00000561381 UGGT1Q9NYU2 1555 aa18.25■□□□□ 0.51
USP3-220ENST00000561381 UBAP1LF5GYI3 381 aa18.24■□□□□ 0.51
USP3-220ENST00000561381 ANKLE2Q86XL3 938 aa18.24■□□□□ 0.51
USP3-220ENST00000561381 ZC3H13Q5T200 1668 aaKnown RBP18.24■□□□□ 0.51
USP3-220ENST00000561381 CEP152O94986 1710 aa18.23■□□□□ 0.51
USP3-220ENST00000561381 CROCC2H7BZ55 1655 aa18.23■□□□□ 0.51
USP3-220ENST00000561381 SPATA31D1Q6ZQQ2 1576 aa18.23■□□□□ 0.51
USP3-220ENST00000561381 ERVK-7P63135 1459 aa18.23■□□□□ 0.51
USP3-220ENST00000561381 SHANK2Q9UPX8 1470 aa18.22■□□□□ 0.51
USP3-220ENST00000561381 CFAP65Q6ZU64 1925 aaKnown RBP18.22■□□□□ 0.51
USP3-220ENST00000561381 NPM3O75607 178 aaKnown RBP18.22■□□□□ 0.51
USP3-220ENST00000561381 DAPK1P53355 1430 aa18.22■□□□□ 0.51
USP3-220ENST00000561381 FGD6Q6ZV73 1430 aa18.22■□□□□ 0.51
USP3-220ENST00000561381 DISP3Q9P2K9 1392 aa18.2■□□□□ 0.5
USP3-220ENST00000561381 NPHP4O75161 1426 aaPredicted RBP18.19■□□□□ 0.5
USP3-220ENST00000561381 ERBINQ96RT1 1412 aa18.19■□□□□ 0.5
USP3-220ENST00000561381 CHIC2Q9UKJ5 165 aa18.19■□□□□ 0.5
USP3-220ENST00000561381 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.18■□□□□ 0.5
USP3-220ENST00000561381 PRDM15P57071 1507 aaPredicted RBP18.18■□□□□ 0.5
USP3-220ENST00000561381 DEPDC5O75140 1603 aa18.17■□□□□ 0.5
USP3-220ENST00000561381 MED14O60244 1454 aa18.17■□□□□ 0.5
USP3-220ENST00000561381 VWDEQ8N2E2 1590 aa18.17■□□□□ 0.5
USP3-220ENST00000561381 C1QBPQ07021 282 aaKnown RBP18.16■□□□□ 0.5
USP3-220ENST00000561381 ILDR2Q71H61 639 aa18.16■□□□□ 0.5
USP3-220ENST00000561381 CPS1P31327 1500 aa18.15■□□□□ 0.5
USP3-220ENST00000561381 ARHGAP31Q2M1Z3 1444 aa18.14■□□□□ 0.49
USP3-220ENST00000561381 IQGAP1P46940 1657 aa18.13■□□□□ 0.49
USP3-220ENST00000561381 UBR1Q8IWV7 1749 aa18.13■□□□□ 0.49
USP3-220ENST00000561381 ANKRD30AQ9BXX3 1397 aa18.13■□□□□ 0.49
USP3-220ENST00000561381 PIP4K2BP78356 416 aa18.11■□□□□ 0.49
USP3-220ENST00000561381 LTKP29376 864 aa18.1■□□□□ 0.49
USP3-220ENST00000561381 FAM50AQ14320 339 aaKnown RBP18.1■□□□□ 0.49
USP3-220ENST00000561381 KANK1Q14678 1352 aa18.09■□□□□ 0.49
USP3-220ENST00000561381 STRCP1A6NGW2 1772 aa18.09■□□□□ 0.49
USP3-220ENST00000561381 TOM1O60784 492 aa18.08■□□□□ 0.48
USP3-220ENST00000561381 SCAF11Q99590 1463 aaKnown RBP18.07■□□□□ 0.48
USP3-220ENST00000561381 ARHGAP23Q9P227 1491 aa18.07■□□□□ 0.48
USP3-220ENST00000561381 TXNDC2Q86VQ3 553 aa18.07■□□□□ 0.48
USP3-220ENST00000561381 ADGRL2O95490 1459 aa18.07■□□□□ 0.48
USP3-220ENST00000561381 PIK3C2BO00750 1634 aa18.06■□□□□ 0.48
USP3-220ENST00000561381 HSPA1LP34931 641 aa18.06■□□□□ 0.48
USP3-220ENST00000561381 SLIT1O75093 1534 aa18.06■□□□□ 0.48
USP3-220ENST00000561381 LMTK2Q8IWU2 1503 aa18.06■□□□□ 0.48
USP3-220ENST00000561381 IDI1Q13907 227 aa18.05■□□□□ 0.48
USP3-220ENST00000561381 ALKQ9UM73 1620 aa18.05■□□□□ 0.48
USP3-220ENST00000561381 LRRC7Q96NW7 1537 aa18.04■□□□□ 0.48
USP3-220ENST00000561381 STAG3Q9UJ98 1225 aa18.03■□□□□ 0.48
USP3-220ENST00000561381 TMEM2Q9UHN6 1383 aa18.03■□□□□ 0.48
USP3-220ENST00000561381 SYNMO15061 1565 aa18.02■□□□□ 0.48
USP3-220ENST00000561381 ANKRD50Q9ULJ7 1429 aa18.01■□□□□ 0.47
USP3-220ENST00000561381 EID1Q9Y6B2 187 aa18.01■□□□□ 0.47
USP3-220ENST00000561381 EFCAB6Q5THR3 1501 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms