RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 NISCHQ9Y2I1 1504 aa29.14■■■□□ 2.25
USP3-220ENST00000561381 AEBP2Q6ZN18 517 aaPredicted RBP29.12■■■□□ 2.25
USP3-220ENST00000561381 CHIC1Q5VXU3 224 aa27.43■■□□□ 1.98
USP3-220ENST00000561381 ABCC9O60706 1549 aa26.13■■□□□ 1.77
USP3-220ENST00000561381 CCDC180Q9P1Z9 1646 aa26.06■■□□□ 1.76
USP3-220ENST00000561381 RB1CC1Q8TDY2 1594 aa24.81■■□□□ 1.56
USP3-220ENST00000561381 SENP3Q9H4L4 574 aaPredicted RBP24.69■■□□□ 1.54
USP3-220ENST00000561381 NACADO15069 1562 aa24.66■■□□□ 1.54
USP3-220ENST00000561381 DCAF8L2P0C7V8 631 aa24.63■■□□□ 1.53
USP3-220ENST00000561381 DNAJC5BQ9UF47 199 aa24.52■■□□□ 1.52
USP3-220ENST00000561381 PHF23Q9BUL5 403 aaPredicted RBP24.43■■□□□ 1.5
USP3-220ENST00000561381 PABPN1Q86U42 306 aaKnown RBP eCLIP24.37■■□□□ 1.49
USP3-220ENST00000561381 MYO15BQ96JP2 1530 aa24.31■■□□□ 1.48
USP3-220ENST00000561381 UNC13AQ9UPW8 1703 aa24.29■■□□□ 1.48
USP3-220ENST00000561381 ZCCHC6Q5VYS8 1495 aaKnown RBP24.16■■□□□ 1.46
USP3-220ENST00000561381 BICRAQ9NZM4 1560 aa24.14■■□□□ 1.45
USP3-220ENST00000561381 DCAF1Q9Y4B6 1507 aa24.03■■□□□ 1.44
USP3-220ENST00000561381 SCRIBQ14160 1630 aa23.84■■□□□ 1.41
USP3-220ENST00000561381 SHROOM4Q9ULL8 1493 aa23.73■■□□□ 1.39
USP3-220ENST00000561381 CC2D2AQ9P2K1 1620 aa23.57■■□□□ 1.36
USP3-220ENST00000561381 EIF4G1Q04637 1599 aaKnown RBP23.52■■□□□ 1.36
USP3-220ENST00000561381 CECR2Q9BXF3 1484 aa23.5■■□□□ 1.35
USP3-220ENST00000561381 FOXD1Q16676 465 aa23.17■■□□□ 1.3
USP3-220ENST00000561381 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
USP3-220ENST00000561381 ATAD2BQ9ULI0 1458 aa22.74■■□□□ 1.23
USP3-220ENST00000561381 SMARCA4P51532 1647 aa22.71■■□□□ 1.23
USP3-220ENST00000561381 SMARCA2P51531 1590 aa22.64■■□□□ 1.22
USP3-220ENST00000561381 HMGXB3Q12766 1538 aa22.6■■□□□ 1.21
USP3-220ENST00000561381 BAZ1AQ9NRL2 1556 aaPredicted RBP22.59■■□□□ 1.21
USP3-220ENST00000561381 ERCC6Q03468 1493 aa22.52■■□□□ 1.2
USP3-220ENST00000561381 BAZ1BQ9UIG0 1483 aaKnown RBP22.51■■□□□ 1.19
USP3-220ENST00000561381 MROH2BQ7Z745 1585 aa22.49■■□□□ 1.19
USP3-220ENST00000561381 PEG3Q9GZU2 1588 aa22.47■■□□□ 1.19
USP3-220ENST00000561381 NESP48681 1621 aa22.47■■□□□ 1.19
USP3-220ENST00000561381 CUX2O14529 1486 aa22.43■■□□□ 1.18
USP3-220ENST00000561381 DNAJC5Q9H3Z4 198 aa22.42■■□□□ 1.18
USP3-220ENST00000561381 LAMC3Q9Y6N6 1575 aa22.24■■□□□ 1.15
USP3-220ENST00000561381 WIZO95785 1651 aa22.21■■□□□ 1.15
USP3-220ENST00000561381 THOC2Q8NI27 1593 aaKnown RBP22.18■■□□□ 1.14
USP3-220ENST00000561381 KIF21AQ7Z4S6 1674 aa22.14■■□□□ 1.13
USP3-220ENST00000561381 PDS5BQ9NTI5 1447 aa22.12■■□□□ 1.13
USP3-220ENST00000561381 CADPSQ9ULU8 1353 aa22.11■■□□□ 1.13
USP3-220ENST00000561381 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
USP3-220ENST00000561381 PLPPR3Q6T4P5 718 aa21.94■■□□□ 1.1
USP3-220ENST00000561381 MRC2Q9UBG0 1479 aa21.94■■□□□ 1.1
USP3-220ENST00000561381 TOP2AP11388 1531 aaKnown RBP21.9■■□□□ 1.1
USP3-220ENST00000561381 WDR62O43379 1518 aa21.88■■□□□ 1.09
USP3-220ENST00000561381 CFTRP13569 1480 aa21.86■■□□□ 1.09
USP3-220ENST00000561381 FANCD2Q9BXW9 1451 aa21.86■■□□□ 1.09
USP3-220ENST00000561381 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
USP3-220ENST00000561381 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
USP3-220ENST00000561381 POTEDQ86YR6 584 aa21.69■■□□□ 1.06
USP3-220ENST00000561381 CCDC88BA6NC98 1476 aa21.69■■□□□ 1.06
USP3-220ENST00000561381 MSH5O43196 834 aa21.63■■□□□ 1.05
USP3-220ENST00000561381 PRDM2Q13029 1718 aa21.6■■□□□ 1.05
USP3-220ENST00000561381 PPP6R1Q9UPN7 881 aa21.55■■□□□ 1.04
USP3-220ENST00000561381 PIAS4Q8N2W9 510 aaPredicted RBP21.54■■□□□ 1.04
USP3-220ENST00000561381 TRIM41Q8WV44 630 aa21.49■■□□□ 1.03
USP3-220ENST00000561381 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
USP3-220ENST00000561381 OSCARQ8IYS5 282 aa21.45■■□□□ 1.02
USP3-220ENST00000561381 ZNF608Q9ULD9 1512 aaPredicted RBP21.44■■□□□ 1.02
USP3-220ENST00000561381 ADRA2BP18089 450 aa21.43■■□□□ 1.02
USP3-220ENST00000561381 IFT140Q96RY7 1462 aa21.42■■□□□ 1.02
USP3-220ENST00000561381 ABCC8Q09428 1581 aa21.36■■□□□ 1.01
USP3-220ENST00000561381 DNMBPQ6XZF7 1577 aa21.36■■□□□ 1.01
USP3-220ENST00000561381 EIF4G3O43432 1585 aaKnown RBP21.27■■□□□ 1
USP3-220ENST00000561381 TARBP1Q13395 1621 aaKnown RBP21.25■□□□□ 0.99
USP3-220ENST00000561381 AQRO60306 1485 aaKnown RBP eCLIP21.24■□□□□ 0.998e-7■■■■■ 28.7
USP3-220ENST00000561381 POLA1P09884 1462 aaPredicted RBP21.24■□□□□ 0.99
USP3-220ENST00000561381 RAD54L2Q9Y4B4 1467 aa21.2■□□□□ 0.98
USP3-220ENST00000561381 RIMBP3CA6NJZ7 1639 aa21.17■□□□□ 0.98
USP3-220ENST00000561381 RIMBP3BA6NNM3 1639 aa21.17■□□□□ 0.98
USP3-220ENST00000561381 RIMBP3Q9UFD9 1639 aa21.17■□□□□ 0.98
USP3-220ENST00000561381 SOGA1O94964 1423 aa21.14■□□□□ 0.98
USP3-220ENST00000561381 SUPT5HO00267 1087 aaKnown RBP21.13■□□□□ 0.97
USP3-220ENST00000561381 TDRD9Q8NDG6 1382 aaKnown RBP21.12■□□□□ 0.97
USP3-220ENST00000561381 CUX1P39880 1505 aa21.12■□□□□ 0.97
USP3-220ENST00000561381 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
USP3-220ENST00000561381 CHD1O14646 1710 aa21.12■□□□□ 0.97
USP3-220ENST00000561381 ARHGEF11O15085 1522 aa21.1■□□□□ 0.97
USP3-220ENST00000561381 FBLN2P98095 1184 aa21.09■□□□□ 0.97
USP3-220ENST00000561381 SNAPC4Q5SXM2 1469 aa21.01■□□□□ 0.95
USP3-220ENST00000561381 CYB5RLQ6IPT4 315 aa20.98■□□□□ 0.95
USP3-220ENST00000561381 WDR97A6NE52 1622 aa20.97■□□□□ 0.95
USP3-220ENST00000561381 GRIN2BQ13224 1484 aa20.94■□□□□ 0.94
USP3-220ENST00000561381 CHMP7Q8WUX9 453 aaPredicted RBP20.93■□□□□ 0.94
USP3-220ENST00000561381 MAGI1Q96QZ7 1491 aaPredicted RBP20.93■□□□□ 0.94
USP3-220ENST00000561381 ARAP1Q96P48 1450 aa20.92■□□□□ 0.94
USP3-220ENST00000561381 GAPVD1Q14C86 1478 aa20.88■□□□□ 0.93
USP3-220ENST00000561381 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
USP3-220ENST00000561381 ABCA10Q8WWZ4 1543 aa20.86■□□□□ 0.93
USP3-220ENST00000561381 SYNJ2O15056 1496 aa20.86■□□□□ 0.93
USP3-220ENST00000561381 PBRM1Q86U86 1689 aa20.85■□□□□ 0.93
USP3-220ENST00000561381 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
USP3-220ENST00000561381 ABCA5Q8WWZ7 1642 aa20.82■□□□□ 0.92
USP3-220ENST00000561381 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
USP3-220ENST00000561381 TOP2BQ02880 1626 aa20.75■□□□□ 0.91
USP3-220ENST00000561381 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
USP3-220ENST00000561381 TRHP20396 242 aaPredicted RBP20.72■□□□□ 0.91
USP3-220ENST00000561381 GRIN2AQ12879 1464 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms