RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 FBXO31Q5XUX0 539 aaPredicted RBP18.88■□□□□ 0.61
CKAP4-202ENST00000552828 TNRQ92752 1358 aa18.88■□□□□ 0.61
CKAP4-202ENST00000552828 PZPP20742 1482 aa18.88■□□□□ 0.61
CKAP4-202ENST00000552828 ARHGEF5Q12774 1597 aa18.88■□□□□ 0.61
CKAP4-202ENST00000552828 DNMT1P26358 1616 aaKnown RBP18.88■□□□□ 0.61
CKAP4-202ENST00000552828 KDM5DQ9BY66 1539 aa18.87■□□□□ 0.61
CKAP4-202ENST00000552828 WASHC2CQ9Y4E1 1318 aa18.87■□□□□ 0.61
CKAP4-202ENST00000552828 TSPY4P0CV99 314 aa18.86■□□□□ 0.61
CKAP4-202ENST00000552828 TSPY10P0CW01 314 aa18.86■□□□□ 0.61
CKAP4-202ENST00000552828 ILDR2Q71H61 639 aa18.86■□□□□ 0.61
CKAP4-202ENST00000552828 LRRC9Q6ZRR7 1453 aa18.84■□□□□ 0.61
CKAP4-202ENST00000552828 VPS8Q8N3P4 1428 aa18.84■□□□□ 0.61
CKAP4-202ENST00000552828 MIA2Q96PC5 1412 aa18.83■□□□□ 0.61
CKAP4-202ENST00000552828 UBAP1LF5GYI3 381 aa18.83■□□□□ 0.6
CKAP4-202ENST00000552828 NLRP1Q9C000 1473 aa18.8■□□□□ 0.6
CKAP4-202ENST00000552828 THEMISQ8N1K5 641 aaPredicted RBP18.8■□□□□ 0.6
CKAP4-202ENST00000552828 MAP3K1Q13233 1512 aa18.79■□□□□ 0.6
CKAP4-202ENST00000552828 SOCS7O14512 581 aa18.79■□□□□ 0.6
CKAP4-202ENST00000552828 ANKLE2Q86XL3 938 aa18.79■□□□□ 0.6
CKAP4-202ENST00000552828 NEURL4Q96JN8 1562 aa18.79■□□□□ 0.6
CKAP4-202ENST00000552828 SPATA31D1Q6ZQQ2 1576 aa18.78■□□□□ 0.6
CKAP4-202ENST00000552828 MAST1Q9Y2H9 1570 aa18.78■□□□□ 0.6
CKAP4-202ENST00000552828 LOC105371045A0A1W2PR82 267 aa18.78■□□□□ 0.6
CKAP4-202ENST00000552828 KANK4Q5T7N3 995 aaPredicted RBP18.78■□□□□ 0.6
CKAP4-202ENST00000552828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.77■□□□□ 0.6
CKAP4-202ENST00000552828 RNF17Q9BXT8 1623 aaKnown RBP18.76■□□□□ 0.59
CKAP4-202ENST00000552828 MED14O60244 1454 aa18.76■□□□□ 0.59
CKAP4-202ENST00000552828 SHANK2Q9UPX8 1470 aa18.76■□□□□ 0.59
CKAP4-202ENST00000552828 CPS1P31327 1500 aa18.75■□□□□ 0.59
CKAP4-202ENST00000552828 MYOM3Q5VTT5 1437 aa18.74■□□□□ 0.59
CKAP4-202ENST00000552828 ABCC3O15438 1527 aa18.74■□□□□ 0.59
CKAP4-202ENST00000552828 UGGT1Q9NYU2 1555 aa18.74■□□□□ 0.59
CKAP4-202ENST00000552828 POLR1AO95602 1720 aaPredicted RBP18.74■□□□□ 0.59
CKAP4-202ENST00000552828 DEPDC5O75140 1603 aa18.71■□□□□ 0.59
CKAP4-202ENST00000552828 EIF2AK4Q9P2K8 1649 aaKnown RBP18.71■□□□□ 0.59
CKAP4-202ENST00000552828 NPHP4O75161 1426 aaPredicted RBP18.71■□□□□ 0.59
CKAP4-202ENST00000552828 VWDEQ8N2E2 1590 aa18.71■□□□□ 0.59
CKAP4-202ENST00000552828 ZC3H13Q5T200 1668 aaKnown RBP18.7■□□□□ 0.58
CKAP4-202ENST00000552828 TOM1O60784 492 aa18.7■□□□□ 0.58
CKAP4-202ENST00000552828 MROH1Q8NDA8 1641 aa18.69■□□□□ 0.58
CKAP4-202ENST00000552828 ERVK-7P63135 1459 aa18.69■□□□□ 0.58
CKAP4-202ENST00000552828 DUOX2Q9NRD8 1548 aa18.68■□□□□ 0.58
CKAP4-202ENST00000552828 HSPA1LP34931 641 aa18.65■□□□□ 0.58
CKAP4-202ENST00000552828 ABCC5O15440 1437 aa18.65■□□□□ 0.58
CKAP4-202ENST00000552828 ARHGAP31Q2M1Z3 1444 aa18.65■□□□□ 0.58
CKAP4-202ENST00000552828 PIP4K2BP78356 416 aa18.64■□□□□ 0.57
CKAP4-202ENST00000552828 KIF15Q9NS87 1388 aa18.64■□□□□ 0.57
CKAP4-202ENST00000552828 ERBINQ96RT1 1412 aa18.63■□□□□ 0.57
CKAP4-202ENST00000552828 IQGAP1P46940 1657 aa18.62■□□□□ 0.57
CKAP4-202ENST00000552828 PRDM15P57071 1507 aaPredicted RBP18.61■□□□□ 0.57
CKAP4-202ENST00000552828 SCAF1Q9H7N4 1312 aaKnown RBP18.61■□□□□ 0.57
CKAP4-202ENST00000552828 ALKQ9UM73 1620 aa18.6■□□□□ 0.57
CKAP4-202ENST00000552828 RRP7BPQ9NSQ0 103 aa18.6■□□□□ 0.57
CKAP4-202ENST00000552828 ARHGAP23Q9P227 1491 aa18.59■□□□□ 0.57
CKAP4-202ENST00000552828 LRRC7Q96NW7 1537 aa18.59■□□□□ 0.57
CKAP4-202ENST00000552828 LTKP29376 864 aa18.58■□□□□ 0.56
CKAP4-202ENST00000552828 SLIT1O75093 1534 aa18.58■□□□□ 0.56
CKAP4-202ENST00000552828 SCAF11Q99590 1463 aaKnown RBP18.58■□□□□ 0.56
CKAP4-202ENST00000552828 DAPK1P53355 1430 aa18.57■□□□□ 0.56
CKAP4-202ENST00000552828 CEP152O94986 1710 aa18.57■□□□□ 0.56
CKAP4-202ENST00000552828 UBR1Q8IWV7 1749 aa18.57■□□□□ 0.56
CKAP4-202ENST00000552828 PTPN23Q9H3S7 1636 aa18.57■□□□□ 0.56
CKAP4-202ENST00000552828 APLP2Q06481 763 aa18.57■□□□□ 0.56
CKAP4-202ENST00000552828 TXNDC2Q86VQ3 553 aa18.56■□□□□ 0.56
CKAP4-202ENST00000552828 FGD6Q6ZV73 1430 aa18.56■□□□□ 0.56
CKAP4-202ENST00000552828 CROCC2H7BZ55 1655 aa18.55■□□□□ 0.56
CKAP4-202ENST00000552828 STRCP1A6NGW2 1772 aa18.55■□□□□ 0.56
CKAP4-202ENST00000552828 SYNMO15061 1565 aa18.53■□□□□ 0.56
CKAP4-202ENST00000552828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.56
CKAP4-202ENST00000552828 LMTK2Q8IWU2 1503 aa18.53■□□□□ 0.56
CKAP4-202ENST00000552828 KANK1Q14678 1352 aa18.53■□□□□ 0.56
CKAP4-202ENST00000552828 ANKRD30AQ9BXX3 1397 aa18.53■□□□□ 0.56
CKAP4-202ENST00000552828 MED1Q15648 1581 aaPredicted RBP18.52■□□□□ 0.56
CKAP4-202ENST00000552828 EID1Q9Y6B2 187 aa18.52■□□□□ 0.56
CKAP4-202ENST00000552828 TMEM2Q9UHN6 1383 aa18.52■□□□□ 0.55
CKAP4-202ENST00000552828 IDI1Q13907 227 aa18.49■□□□□ 0.55
CKAP4-202ENST00000552828 CHIC2Q9UKJ5 165 aa18.49■□□□□ 0.55
CKAP4-202ENST00000552828 CFAP65Q6ZU64 1925 aaKnown RBP18.48■□□□□ 0.55
CKAP4-202ENST00000552828 PIK3C2BO00750 1634 aa18.47■□□□□ 0.55
CKAP4-202ENST00000552828 KDM5AP29375 1690 aaKnown RBP18.47■□□□□ 0.55
CKAP4-202ENST00000552828 NOS1P29475 1434 aa18.46■□□□□ 0.55
CKAP4-202ENST00000552828 ADGRL2O95490 1459 aa18.46■□□□□ 0.54
CKAP4-202ENST00000552828 EFCAB6Q5THR3 1501 aa18.45■□□□□ 0.54
CKAP4-202ENST00000552828 STAG3Q9UJ98 1225 aa18.45■□□□□ 0.54
CKAP4-202ENST00000552828 SLC52A1Q9NWF4 448 aa18.43■□□□□ 0.54
CKAP4-202ENST00000552828 KCNA6P17658 529 aa18.42■□□□□ 0.54
CKAP4-202ENST00000552828 TET3O43151 1660 aa18.41■□□□□ 0.54
CKAP4-202ENST00000552828 FAM135BQ49AJ0 1406 aa18.4■□□□□ 0.54
CKAP4-202ENST00000552828 RPRD2Q5VT52 1461 aaKnown RBP18.39■□□□□ 0.54
CKAP4-202ENST00000552828 PHF23Q9BUL5 403 aaPredicted RBP18.39■□□□□ 0.53
CKAP4-202ENST00000552828 TMEM94Q12767 1356 aa18.39■□□□□ 0.53
CKAP4-202ENST00000552828 ANKRD50Q9ULJ7 1429 aa18.39■□□□□ 0.53
CKAP4-202ENST00000552828 XIRP1Q702N8 1843 aaKnown RBP18.38■□□□□ 0.53
CKAP4-202ENST00000552828 SLC26A8Q96RN1 970 aa18.38■□□□□ 0.53
CKAP4-202ENST00000552828 ADGRB3O60242 1522 aa18.38■□□□□ 0.53
CKAP4-202ENST00000552828 FAM50AQ14320 339 aaKnown RBP18.37■□□□□ 0.53
CKAP4-202ENST00000552828 SENP3Q9H4L4 574 aaPredicted RBP18.36■□□□□ 0.53
CKAP4-202ENST00000552828 PROSER2Q86WR7 435 aaPredicted RBP18.34■□□□□ 0.53
CKAP4-202ENST00000552828 ZFYVE9O95405 1425 aa18.33■□□□□ 0.53
CKAP4-202ENST00000552828 NKTRP30414 1462 aaKnown RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms