RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 VPS8Q8N3P4 1428 aa17.97■□□□□ 0.47
CLSTN3-206ENST00000535668 DNMT1P26358 1616 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-206ENST00000535668 LRRC9Q6ZRR7 1453 aa17.95■□□□□ 0.46
CLSTN3-206ENST00000535668 MAST1Q9Y2H9 1570 aa17.95■□□□□ 0.46
CLSTN3-206ENST00000535668 MIA2Q96PC5 1412 aa17.94■□□□□ 0.46
CLSTN3-206ENST00000535668 NCKAP5LQ9HCH0 1330 aa17.94■□□□□ 0.46
CLSTN3-206ENST00000535668 NLRP1Q9C000 1473 aa17.93■□□□□ 0.46
CLSTN3-206ENST00000535668 KIF3BO15066 747 aa17.92■□□□□ 0.46
CLSTN3-206ENST00000535668 TNRQ92752 1358 aa17.91■□□□□ 0.46
CLSTN3-206ENST00000535668 RNF17Q9BXT8 1623 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-206ENST00000535668 MED14O60244 1454 aa17.91■□□□□ 0.46
CLSTN3-206ENST00000535668 TSPY4P0CV99 314 aa17.91■□□□□ 0.46
CLSTN3-206ENST00000535668 TSPY10P0CW01 314 aa17.91■□□□□ 0.46
CLSTN3-206ENST00000535668 ZNF335Q9H4Z2 1342 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-206ENST00000535668 WASHC2CQ9Y4E1 1318 aa17.89■□□□□ 0.45
CLSTN3-206ENST00000535668 EIF2AK4Q9P2K8 1649 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-206ENST00000535668 NEURL4Q96JN8 1562 aa17.87■□□□□ 0.45
CLSTN3-206ENST00000535668 THEMISQ8N1K5 641 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-206ENST00000535668 DEPDC5O75140 1603 aa17.87■□□□□ 0.45
CLSTN3-206ENST00000535668 FBXO31Q5XUX0 539 aaPredicted RBP17.86■□□□□ 0.45
CLSTN3-206ENST00000535668 MYOM3Q5VTT5 1437 aa17.86■□□□□ 0.45
CLSTN3-206ENST00000535668 CPS1P31327 1500 aa17.86■□□□□ 0.45
CLSTN3-206ENST00000535668 SPATA31D1Q6ZQQ2 1576 aa17.86■□□□□ 0.45
CLSTN3-206ENST00000535668 ZC3H13Q5T200 1668 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-206ENST00000535668 ABCC3O15438 1527 aa17.84■□□□□ 0.45
CLSTN3-206ENST00000535668 POLR1AO95602 1720 aaPredicted RBP17.84■□□□□ 0.45
CLSTN3-206ENST00000535668 ARHGAP31Q2M1Z3 1444 aa17.83■□□□□ 0.45
CLSTN3-206ENST00000535668 ANKLE2Q86XL3 938 aa17.83■□□□□ 0.44
CLSTN3-206ENST00000535668 MROH1Q8NDA8 1641 aa17.82■□□□□ 0.44
CLSTN3-206ENST00000535668 SHANK2Q9UPX8 1470 aa17.82■□□□□ 0.44
CLSTN3-206ENST00000535668 DISP3Q9P2K9 1392 aa17.81■□□□□ 0.44
CLSTN3-206ENST00000535668 KANK4Q5T7N3 995 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-206ENST00000535668 UGGT1Q9NYU2 1555 aa17.81■□□□□ 0.44
CLSTN3-206ENST00000535668 DUOX2Q9NRD8 1548 aa17.8■□□□□ 0.44
CLSTN3-206ENST00000535668 VWDEQ8N2E2 1590 aa17.79■□□□□ 0.44
CLSTN3-206ENST00000535668 SOCS7O14512 581 aa17.79■□□□□ 0.44
CLSTN3-206ENST00000535668 ERVK-7P63135 1459 aa17.78■□□□□ 0.44
CLSTN3-206ENST00000535668 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLSTN3-206ENST00000535668 UBAP1LF5GYI3 381 aa17.77■□□□□ 0.44
CLSTN3-206ENST00000535668 ILDR2Q71H61 639 aa17.77■□□□□ 0.44
CLSTN3-206ENST00000535668 ERBINQ96RT1 1412 aa17.77■□□□□ 0.44
CLSTN3-206ENST00000535668 PRDM15P57071 1507 aaPredicted RBP17.77■□□□□ 0.43
CLSTN3-206ENST00000535668 NPHP4O75161 1426 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-206ENST00000535668 ARHGAP23Q9P227 1491 aa17.75■□□□□ 0.43
CLSTN3-206ENST00000535668 ABCC5O15440 1437 aa17.74■□□□□ 0.43
CLSTN3-206ENST00000535668 LOC105371045A0A1W2PR82 267 aa17.74■□□□□ 0.43
CLSTN3-206ENST00000535668 SLIT1O75093 1534 aa17.72■□□□□ 0.43
CLSTN3-206ENST00000535668 TOM1O60784 492 aa17.72■□□□□ 0.43
CLSTN3-206ENST00000535668 KIF15Q9NS87 1388 aa17.71■□□□□ 0.43
CLSTN3-206ENST00000535668 LMTK2Q8IWU2 1503 aa17.71■□□□□ 0.43
CLSTN3-206ENST00000535668 IQGAP1P46940 1657 aa17.71■□□□□ 0.42
CLSTN3-206ENST00000535668 ALKQ9UM73 1620 aa17.7■□□□□ 0.42
CLSTN3-206ENST00000535668 KDM5AP29375 1690 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-206ENST00000535668 CROCC2H7BZ55 1655 aa17.69■□□□□ 0.42
CLSTN3-206ENST00000535668 UBR1Q8IWV7 1749 aa17.69■□□□□ 0.42
CLSTN3-206ENST00000535668 DAPK1P53355 1430 aa17.67■□□□□ 0.42
CLSTN3-206ENST00000535668 FGD6Q6ZV73 1430 aa17.67■□□□□ 0.42
CLSTN3-206ENST00000535668 PTPN23Q9H3S7 1636 aa17.67■□□□□ 0.42
CLSTN3-206ENST00000535668 SYNMO15061 1565 aa17.66■□□□□ 0.42
CLSTN3-206ENST00000535668 SCAF11Q99590 1463 aaKnown RBP17.66■□□□□ 0.42
CLSTN3-206ENST00000535668 LRRC7Q96NW7 1537 aa17.66■□□□□ 0.42
CLSTN3-206ENST00000535668 ADGRL2O95490 1459 aa17.64■□□□□ 0.41
CLSTN3-206ENST00000535668 CEP152O94986 1710 aa17.64■□□□□ 0.41
CLSTN3-206ENST00000535668 STRCP1A6NGW2 1772 aa17.62■□□□□ 0.41
CLSTN3-206ENST00000535668 LTKP29376 864 aa17.62■□□□□ 0.41
CLSTN3-206ENST00000535668 HSPA1LP34931 641 aa17.62■□□□□ 0.41
CLSTN3-206ENST00000535668 ANKRD30AQ9BXX3 1397 aa17.62■□□□□ 0.41
CLSTN3-206ENST00000535668 TMEM2Q9UHN6 1383 aa17.62■□□□□ 0.41
CLSTN3-206ENST00000535668 NOS1P29475 1434 aa17.62■□□□□ 0.41
CLSTN3-206ENST00000535668 KANK1Q14678 1352 aa17.6■□□□□ 0.41
CLSTN3-206ENST00000535668 APLP2Q06481 763 aa17.59■□□□□ 0.41
CLSTN3-206ENST00000535668 RRP7BPQ9NSQ0 103 aa17.59■□□□□ 0.41
CLSTN3-206ENST00000535668 RPRD2Q5VT52 1461 aaKnown RBP17.58■□□□□ 0.41
CLSTN3-206ENST00000535668 TXNDC2Q86VQ3 553 aa17.57■□□□□ 0.4
CLSTN3-206ENST00000535668 SLC52A1Q9NWF4 448 aa17.57■□□□□ 0.4
CLSTN3-206ENST00000535668 TET3O43151 1660 aa17.56■□□□□ 0.4
CLSTN3-206ENST00000535668 EID1Q9Y6B2 187 aa17.56■□□□□ 0.4
CLSTN3-206ENST00000535668 EFCAB6Q5THR3 1501 aa17.56■□□□□ 0.4
CLSTN3-206ENST00000535668 CFAP65Q6ZU64 1925 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-206ENST00000535668 PIK3C2BO00750 1634 aa17.55■□□□□ 0.4
CLSTN3-206ENST00000535668 MED1Q15648 1581 aaPredicted RBP17.55■□□□□ 0.4
CLSTN3-206ENST00000535668 IDI1Q13907 227 aa17.55■□□□□ 0.4
CLSTN3-206ENST00000535668 FAM135BQ49AJ0 1406 aa17.53■□□□□ 0.4
CLSTN3-206ENST00000535668 PIP4K2BP78356 416 aa17.52■□□□□ 0.4
CLSTN3-206ENST00000535668 KCNA6P17658 529 aa17.51■□□□□ 0.39
CLSTN3-206ENST00000535668 ANKRD50Q9ULJ7 1429 aa17.5■□□□□ 0.39
CLSTN3-206ENST00000535668 XIRP1Q702N8 1843 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-206ENST00000535668 ADGRB3O60242 1522 aa17.49■□□□□ 0.39
CLSTN3-206ENST00000535668 ROCK1Q13464 1354 aa17.48■□□□□ 0.39
CLSTN3-206ENST00000535668 NKTRP30414 1462 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-206ENST00000535668 ZFYVE9O95405 1425 aa17.47■□□□□ 0.39
CLSTN3-206ENST00000535668 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLSTN3-206ENST00000535668 NWD1Q149M9 1564 aa17.47■□□□□ 0.39
CLSTN3-206ENST00000535668 NCOA3Q9Y6Q9 1424 aa17.46■□□□□ 0.39
CLSTN3-206ENST00000535668 SCAF1Q9H7N4 1312 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-206ENST00000535668 CHIC2Q9UKJ5 165 aa17.44■□□□□ 0.38
CLSTN3-206ENST00000535668 TMEM94Q12767 1356 aa17.43■□□□□ 0.38
CLSTN3-206ENST00000535668 PLEKHG1Q9ULL1 1385 aa17.43■□□□□ 0.38
CLSTN3-206ENST00000535668 UNC13BO14795 1591 aa17.43■□□□□ 0.38
CLSTN3-206ENST00000535668 HDGFP51858 240 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms