RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 PTPRTO14522 1441 aa27.42■■□□□ 1.98
DDX41-217ENST00000515562 CEP170BQ9Y4F5 1589 aaPredicted RBP27.42■■□□□ 1.98
DDX41-217ENST00000515562 CAMSAP1Q5T5Y3 1602 aa27.41■■□□□ 1.98
DDX41-217ENST00000515562 EIF2AK4Q9P2K8 1649 aaKnown RBP27.41■■□□□ 1.98
DDX41-217ENST00000515562 RNF17Q9BXT8 1623 aaKnown RBP27.4■■□□□ 1.98
DDX41-217ENST00000515562 PTPN23Q9H3S7 1636 aa27.4■■□□□ 1.98
DDX41-217ENST00000515562 CROCC2H7BZ55 1655 aa27.39■■□□□ 1.97
DDX41-217ENST00000515562 PZPP20742 1482 aa27.38■■□□□ 1.97
DDX41-217ENST00000515562 SHANK2Q9UPX8 1470 aa27.38■■□□□ 1.97
DDX41-217ENST00000515562 CERKQ8TCT0 537 aa27.36■■□□□ 1.97
DDX41-217ENST00000515562 PLA2R1Q13018 1463 aa27.36■■□□□ 1.97
DDX41-217ENST00000515562 WASHC2CQ9Y4E1 1318 aa27.36■■□□□ 1.97
DDX41-217ENST00000515562 ZC3H13Q5T200 1668 aaKnown RBP27.35■■□□□ 1.97
DDX41-217ENST00000515562 FGD6Q6ZV73 1430 aa27.34■■□□□ 1.97
DDX41-217ENST00000515562 DUOX2Q9NRD8 1548 aa27.34■■□□□ 1.97
DDX41-217ENST00000515562 A2ML1A8K2U0 1454 aa27.32■■□□□ 1.96
DDX41-217ENST00000515562 TCOF1Q13428 1488 aaKnown RBP27.32■■□□□ 1.96
DDX41-217ENST00000515562 DNMT1P26358 1616 aaKnown RBP27.31■■□□□ 1.96
DDX41-217ENST00000515562 TNRQ92752 1358 aa27.3■■□□□ 1.96
DDX41-217ENST00000515562 ABCC5O15440 1437 aa27.3■■□□□ 1.96
DDX41-217ENST00000515562 ABCC3O15438 1527 aa27.29■■□□□ 1.96
DDX41-217ENST00000515562 DAPK1P53355 1430 aa27.28■■□□□ 1.96
DDX41-217ENST00000515562 MROH1Q8NDA8 1641 aa27.27■■□□□ 1.96
DDX41-217ENST00000515562 KIF15Q9NS87 1388 aa27.27■■□□□ 1.96
DDX41-217ENST00000515562 ERBINQ96RT1 1412 aa27.25■■□□□ 1.95
DDX41-217ENST00000515562 PKD2Q13563 968 aa27.25■■□□□ 1.95
DDX41-217ENST00000515562 FBXO31Q5XUX0 539 aaPredicted RBP27.24■■□□□ 1.95
DDX41-217ENST00000515562 NLRP1Q9C000 1473 aa27.23■■□□□ 1.95
DDX41-217ENST00000515562 NCKAP5LQ9HCH0 1330 aa27.22■■□□□ 1.95
DDX41-217ENST00000515562 PRDM15P57071 1507 aaPredicted RBP27.22■■□□□ 1.95
DDX41-217ENST00000515562 LTBP4Q8N2S1 1624 aa27.21■■□□□ 1.95
DDX41-217ENST00000515562 CEP152O94986 1710 aa27.2■■□□□ 1.94
DDX41-217ENST00000515562 SPATA31D1Q6ZQQ2 1576 aa27.19■■□□□ 1.94
DDX41-217ENST00000515562 POLR1AO95602 1720 aaPredicted RBP27.18■■□□□ 1.94
DDX41-217ENST00000515562 DEPDC5O75140 1603 aa27.16■■□□□ 1.94
DDX41-217ENST00000515562 RRP7BPQ9NSQ0 103 aa27.16■■□□□ 1.94
DDX41-217ENST00000515562 ANKRD30AQ9BXX3 1397 aa27.16■■□□□ 1.94
DDX41-217ENST00000515562 IQSEC2Q5JU85 1478 aa27.16■■□□□ 1.94
DDX41-217ENST00000515562 UGGT1Q9NYU2 1555 aa27.15■■□□□ 1.94
DDX41-217ENST00000515562 ERVK-7P63135 1459 aa27.15■■□□□ 1.94
DDX41-217ENST00000515562 ADGRL2O95490 1459 aa27.11■■□□□ 1.93
DDX41-217ENST00000515562 NEURL4Q96JN8 1562 aa27.1■■□□□ 1.93
DDX41-217ENST00000515562 ARHGAP31Q2M1Z3 1444 aa27.1■■□□□ 1.93
DDX41-217ENST00000515562 THEMISQ8N1K5 641 aaPredicted RBP27.09■■□□□ 1.93
DDX41-217ENST00000515562 KANK1Q14678 1352 aa27.08■■□□□ 1.93
DDX41-217ENST00000515562 FAM50AQ14320 339 aaKnown RBP27.07■■□□□ 1.92
DDX41-217ENST00000515562 CHIC2Q9UKJ5 165 aa27.07■■□□□ 1.92
DDX41-217ENST00000515562 ZNF335Q9H4Z2 1342 aaPredicted RBP27.07■■□□□ 1.92
DDX41-217ENST00000515562 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.07■■□□□ 1.92
DDX41-217ENST00000515562 ANKLE2Q86XL3 938 aa27.03■■□□□ 1.92
DDX41-217ENST00000515562 LMTK2Q8IWU2 1503 aa27.03■■□□□ 1.92
DDX41-217ENST00000515562 VWDEQ8N2E2 1590 aa27.03■■□□□ 1.92
DDX41-217ENST00000515562 MED14O60244 1454 aa27.01■■□□□ 1.91
DDX41-217ENST00000515562 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.01■■□□□ 1.913e-8■■□□□ 14.5
DDX41-217ENST00000515562 UBR1Q8IWV7 1749 aa27.01■■□□□ 1.91
DDX41-217ENST00000515562 CFAP65Q6ZU64 1925 aaKnown RBP27■■□□□ 1.91
DDX41-217ENST00000515562 IQGAP1P46940 1657 aa26.98■■□□□ 1.91
DDX41-217ENST00000515562 NPHP4O75161 1426 aaPredicted RBP26.98■■□□□ 1.91
DDX41-217ENST00000515562 ANKRD50Q9ULJ7 1429 aa26.97■■□□□ 1.91
DDX41-217ENST00000515562 EFCAB6Q5THR3 1501 aa26.96■■□□□ 1.91
DDX41-217ENST00000515562 CPS1P31327 1500 aa26.95■■□□□ 1.91
DDX41-217ENST00000515562 KDM5AP29375 1690 aaKnown RBP26.91■■□□□ 1.9
DDX41-217ENST00000515562 SLIT1O75093 1534 aa26.9■■□□□ 1.9
DDX41-217ENST00000515562 PIK3C2BO00750 1634 aa26.9■■□□□ 1.9
DDX41-217ENST00000515562 SCAF11Q99590 1463 aaKnown RBP26.89■■□□□ 1.9
DDX41-217ENST00000515562 ARHGAP23Q9P227 1491 aa26.89■■□□□ 1.9
DDX41-217ENST00000515562 ROCK1Q13464 1354 aa26.89■■□□□ 1.9
DDX41-217ENST00000515562 SYNMO15061 1565 aa26.87■■□□□ 1.89
DDX41-217ENST00000515562 RPRD2Q5VT52 1461 aaKnown RBP26.87■■□□□ 1.89
DDX41-217ENST00000515562 UNC13BO14795 1591 aa26.86■■□□□ 1.89
DDX41-217ENST00000515562 TET3O43151 1660 aa26.85■■□□□ 1.89
DDX41-217ENST00000515562 NOS1P29475 1434 aa26.85■■□□□ 1.89
DDX41-217ENST00000515562 UBAP1LF5GYI3 381 aa26.83■■□□□ 1.89
DDX41-217ENST00000515562 GCC2Q8IWJ2 1684 aa26.82■■□□□ 1.88
DDX41-217ENST00000515562 TMEM2Q9UHN6 1383 aa26.81■■□□□ 1.88
DDX41-217ENST00000515562 ADGRB3O60242 1522 aa26.8■■□□□ 1.88
DDX41-217ENST00000515562 STAG3Q9UJ98 1225 aa26.8■■□□□ 1.88
DDX41-217ENST00000515562 EID1Q9Y6B2 187 aa26.8■■□□□ 1.88
DDX41-217ENST00000515562 IDI1Q13907 227 aa26.78■■□□□ 1.88
DDX41-217ENST00000515562 TXNDC2Q86VQ3 553 aa26.78■■□□□ 1.88
DDX41-217ENST00000515562 LTKP29376 864 aa26.76■■□□□ 1.87
DDX41-217ENST00000515562 PPARGC1BQ86YN6 1023 aaKnown RBP26.76■■□□□ 1.87
DDX41-217ENST00000515562 SLC52A1Q9NWF4 448 aa26.76■■□□□ 1.87
DDX41-217ENST00000515562 IQGAP3Q86VI3 1631 aa26.76■■□□□ 1.87
DDX41-217ENST00000515562 STRCP1A6NGW2 1772 aa26.75■■□□□ 1.87
DDX41-217ENST00000515562 ITGAEP38570 1179 aa26.72■■□□□ 1.87
DDX41-217ENST00000515562 TOM1O60784 492 aa26.71■■□□□ 1.87
DDX41-217ENST00000515562 LRRC7Q96NW7 1537 aa26.7■■□□□ 1.87
DDX41-217ENST00000515562 E9PCH4 1651 aa26.7■■□□□ 1.87
DDX41-217ENST00000515562 RRBP1Q9P2E9 1410 aaKnown RBP26.7■■□□□ 1.86
DDX41-217ENST00000515562 NUP155O75694 1391 aa26.65■■□□□ 1.86
DDX41-217ENST00000515562 TMEM131LA2VDJ0 1609 aa26.64■■□□□ 1.85
DDX41-217ENST00000515562 SCAF1Q9H7N4 1312 aaKnown RBP26.64■■□□□ 1.85
DDX41-217ENST00000515562 MYO5BQ9ULV0 1848 aa26.62■■□□□ 1.85
DDX41-217ENST00000515562 DISP3Q9P2K9 1392 aa26.62■■□□□ 1.85
DDX41-217ENST00000515562 ALKQ9UM73 1620 aa26.61■■□□□ 1.85
DDX41-217ENST00000515562 PIP4K2BP78356 416 aa26.61■■□□□ 1.85
DDX41-217ENST00000515562 ZFYVE9O95405 1425 aa26.61■■□□□ 1.85
DDX41-217ENST00000515562 RIMS2Q9UQ26 1411 aa26.56■■□□□ 1.84
DDX41-217ENST00000515562 HDGFP51858 240 aaKnown RBP26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms