RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 POLR1AO95602 1720 aaPredicted RBP25.3■■□□□ 1.64
LMNA-223ENST00000515459 KIF3BO15066 747 aa25.3■■□□□ 1.64
LMNA-223ENST00000515459 FAM135AQ9P2D6 1515 aa25.3■■□□□ 1.64
LMNA-223ENST00000515459 KDM5DQ9BY66 1539 aa25.29■■□□□ 1.64
LMNA-223ENST00000515459 CAMSAP2Q08AD1 1489 aa25.28■■□□□ 1.64
LMNA-223ENST00000515459 RSPH4AQ5TD94 716 aa25.28■■□□□ 1.64
LMNA-223ENST00000515459 TNRQ92752 1358 aa25.28■■□□□ 1.64
LMNA-223ENST00000515459 PZPP20742 1482 aa25.28■■□□□ 1.64
LMNA-223ENST00000515459 FBXO31Q5XUX0 539 aaPredicted RBP25.27■■□□□ 1.64
LMNA-223ENST00000515459 NCOA2Q15596 1464 aa25.27■■□□□ 1.64
LMNA-223ENST00000515459 NEURL4Q96JN8 1562 aa25.24■■□□□ 1.63
LMNA-223ENST00000515459 WASHC2CQ9Y4E1 1318 aa25.24■■□□□ 1.63
LMNA-223ENST00000515459 CPS1P31327 1500 aa25.22■■□□□ 1.63
LMNA-223ENST00000515459 ARHGEF5Q12774 1597 aa25.21■■□□□ 1.63
LMNA-223ENST00000515459 NLRP1Q9C000 1473 aa25.18■■□□□ 1.62
LMNA-223ENST00000515459 SHANK2Q9UPX8 1470 aa25.18■■□□□ 1.62
LMNA-223ENST00000515459 ANKLE2Q86XL3 938 aa25.18■■□□□ 1.62
LMNA-223ENST00000515459 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.18■■□□□ 1.62
LMNA-223ENST00000515459 TSPY4P0CV99 314 aa25.17■■□□□ 1.62
LMNA-223ENST00000515459 TSPY10P0CW01 314 aa25.17■■□□□ 1.62
LMNA-223ENST00000515459 THEMISQ8N1K5 641 aaPredicted RBP25.17■■□□□ 1.62
LMNA-223ENST00000515459 MIA2Q96PC5 1412 aa25.17■■□□□ 1.62
LMNA-223ENST00000515459 UGGT1Q9NYU2 1555 aa25.16■■□□□ 1.62
LMNA-223ENST00000515459 SCAF1Q9H7N4 1312 aaKnown RBP25.15■■□□□ 1.62
LMNA-223ENST00000515459 TOM1O60784 492 aa25.15■■□□□ 1.62
LMNA-223ENST00000515459 DEPDC5O75140 1603 aa25.13■■□□□ 1.61
LMNA-223ENST00000515459 PIP4K2BP78356 416 aa25.13■■□□□ 1.61
LMNA-223ENST00000515459 RNF17Q9BXT8 1623 aaKnown RBP25.12■■□□□ 1.61
LMNA-223ENST00000515459 ZC3H13Q5T200 1668 aaKnown RBP25.11■■□□□ 1.61
LMNA-223ENST00000515459 VWDEQ8N2E2 1590 aa25.11■■□□□ 1.61
LMNA-223ENST00000515459 MED14O60244 1454 aa25.11■■□□□ 1.61
LMNA-223ENST00000515459 HSPA1LP34931 641 aa25.11■■□□□ 1.61
LMNA-223ENST00000515459 NPHP4O75161 1426 aaPredicted RBP25.1■■□□□ 1.61
LMNA-223ENST00000515459 MAST1Q9Y2H9 1570 aa25.09■■□□□ 1.61
LMNA-223ENST00000515459 IQGAP1P46940 1657 aa25.08■■□□□ 1.61
LMNA-223ENST00000515459 LRRC9Q6ZRR7 1453 aa25.08■■□□□ 1.6
LMNA-223ENST00000515459 ABCC3O15438 1527 aa25.07■■□□□ 1.6
LMNA-223ENST00000515459 EIF2AK4Q9P2K8 1649 aaKnown RBP25.07■■□□□ 1.6
LMNA-223ENST00000515459 MED1Q15648 1581 aaPredicted RBP25.05■■□□□ 1.6
LMNA-223ENST00000515459 VPS8Q8N3P4 1428 aa25.03■■□□□ 1.6
LMNA-223ENST00000515459 ERVK-7P63135 1459 aa25.01■■□□□ 1.59
LMNA-223ENST00000515459 MROH1Q8NDA8 1641 aa25■■□□□ 1.59
LMNA-223ENST00000515459 CEP152O94986 1710 aa25■■□□□ 1.59
LMNA-223ENST00000515459 STRCP1A6NGW2 1772 aa24.99■■□□□ 1.59
LMNA-223ENST00000515459 ALKQ9UM73 1620 aa24.99■■□□□ 1.59
LMNA-223ENST00000515459 CFAP65Q6ZU64 1925 aaKnown RBP24.98■■□□□ 1.59
LMNA-223ENST00000515459 UBR1Q8IWV7 1749 aa24.97■■□□□ 1.59
LMNA-223ENST00000515459 MYOM3Q5VTT5 1437 aa24.96■■□□□ 1.59
LMNA-223ENST00000515459 SYNMO15061 1565 aa24.96■■□□□ 1.59
LMNA-223ENST00000515459 MAP3K1Q13233 1512 aa24.96■■□□□ 1.59
LMNA-223ENST00000515459 LRRC7Q96NW7 1537 aa24.95■■□□□ 1.58
LMNA-223ENST00000515459 DUOX2Q9NRD8 1548 aa24.95■■□□□ 1.58
LMNA-223ENST00000515459 KANK4Q5T7N3 995 aaPredicted RBP24.94■■□□□ 1.58
LMNA-223ENST00000515459 SCAF11Q99590 1463 aaKnown RBP24.9■■□□□ 1.58
LMNA-223ENST00000515459 PRDM15P57071 1507 aaPredicted RBP24.88■■□□□ 1.57
LMNA-223ENST00000515459 PHF23Q9BUL5 403 aaPredicted RBP24.88■■□□□ 1.57
LMNA-223ENST00000515459 LOC105371045A0A1W2PR82 267 aa24.87■■□□□ 1.57
LMNA-223ENST00000515459 CROCC2H7BZ55 1655 aa24.87■■□□□ 1.57
LMNA-223ENST00000515459 ARHGAP31Q2M1Z3 1444 aa24.86■■□□□ 1.57
LMNA-223ENST00000515459 SLIT1O75093 1534 aa24.86■■□□□ 1.57
LMNA-223ENST00000515459 ARHGAP23Q9P227 1491 aa24.86■■□□□ 1.57
LMNA-223ENST00000515459 KIF15Q9NS87 1388 aa24.86■■□□□ 1.57
LMNA-223ENST00000515459 ERBINQ96RT1 1412 aa24.86■■□□□ 1.57
LMNA-223ENST00000515459 TXNDC2Q86VQ3 553 aa24.85■■□□□ 1.57
LMNA-223ENST00000515459 LTKP29376 864 aa24.84■■□□□ 1.57
LMNA-223ENST00000515459 SENP3Q9H4L4 574 aaPredicted RBP24.83■■□□□ 1.57
LMNA-223ENST00000515459 ABCC5O15440 1437 aa24.81■■□□□ 1.56
LMNA-223ENST00000515459 RRP7BPQ9NSQ0 103 aa24.81■■□□□ 1.56
LMNA-223ENST00000515459 EID1Q9Y6B2 187 aa24.81■■□□□ 1.56
LMNA-223ENST00000515459 PTPN23Q9H3S7 1636 aa24.81■■□□□ 1.56
LMNA-223ENST00000515459 PIK3C2BO00750 1634 aa24.8■■□□□ 1.56
LMNA-223ENST00000515459 XIRP1Q702N8 1843 aaKnown RBP24.79■■□□□ 1.56
LMNA-223ENST00000515459 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.79■■□□□ 1.562e-8■■■□□ 16.9
LMNA-223ENST00000515459 KANK1Q14678 1352 aa24.78■■□□□ 1.56
LMNA-223ENST00000515459 DAPK1P53355 1430 aa24.76■■□□□ 1.55
LMNA-223ENST00000515459 KDM5AP29375 1690 aaKnown RBP24.75■■□□□ 1.55
LMNA-223ENST00000515459 STAG3Q9UJ98 1225 aa24.75■■□□□ 1.55
LMNA-223ENST00000515459 TMEM2Q9UHN6 1383 aa24.75■■□□□ 1.55
LMNA-223ENST00000515459 APLP2Q06481 763 aa24.74■■□□□ 1.55
LMNA-223ENST00000515459 EFCAB6Q5THR3 1501 aa24.72■■□□□ 1.55
LMNA-223ENST00000515459 LMTK2Q8IWU2 1503 aa24.71■■□□□ 1.55
LMNA-223ENST00000515459 FGD6Q6ZV73 1430 aa24.69■■□□□ 1.54
LMNA-223ENST00000515459 ANKRD30AQ9BXX3 1397 aa24.69■■□□□ 1.54
LMNA-223ENST00000515459 IDI1Q13907 227 aa24.68■■□□□ 1.54
LMNA-223ENST00000515459 CHIC2Q9UKJ5 165 aa24.66■■□□□ 1.54
LMNA-223ENST00000515459 FAM135BQ49AJ0 1406 aa24.66■■□□□ 1.54
LMNA-223ENST00000515459 TMEM94Q12767 1356 aa24.66■■□□□ 1.54
LMNA-223ENST00000515459 KCNA6P17658 529 aa24.64■■□□□ 1.54
LMNA-223ENST00000515459 TET3O43151 1660 aa24.64■■□□□ 1.53
LMNA-223ENST00000515459 NOS1P29475 1434 aa24.62■■□□□ 1.53
LMNA-223ENST00000515459 ADGRB3O60242 1522 aa24.62■■□□□ 1.53
LMNA-223ENST00000515459 SLC26A8Q96RN1 970 aa24.62■■□□□ 1.53
LMNA-223ENST00000515459 RGS17Q9UGC6 210 aaPredicted RBP24.62■■□□□ 1.53
LMNA-223ENST00000515459 PROSER2Q86WR7 435 aaPredicted RBP24.6■■□□□ 1.53
LMNA-223ENST00000515459 ROBO1Q9Y6N7 1651 aa24.59■■□□□ 1.53
LMNA-223ENST00000515459 SLC52A1Q9NWF4 448 aa24.59■■□□□ 1.53
LMNA-223ENST00000515459 NWD1Q149M9 1564 aa24.58■■□□□ 1.52
LMNA-223ENST00000515459 NKTRP30414 1462 aaKnown RBP24.58■■□□□ 1.52
LMNA-223ENST00000515459 ADGRL2O95490 1459 aa24.57■■□□□ 1.52
LMNA-223ENST00000515459 RBM33Q96EV2 1170 aaKnown RBP24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms