RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 WASHC2CQ9Y4E1 1318 aa22.56■■□□□ 1.2
HMGCS1-203ENST00000507004 PLA2R1Q13018 1463 aa22.55■■□□□ 1.2
HMGCS1-203ENST00000507004 PKD2Q13563 968 aa22.54■■□□□ 1.2
HMGCS1-203ENST00000507004 ZNF142P52746 1687 aaPredicted RBP22.54■■□□□ 1.2
HMGCS1-203ENST00000507004 CAMSAP1Q5T5Y3 1602 aa22.53■■□□□ 1.2
HMGCS1-203ENST00000507004 MYO3AQ8NEV4 1616 aa22.53■■□□□ 1.2
HMGCS1-203ENST00000507004 PZPP20742 1482 aa22.53■■□□□ 1.2
HMGCS1-203ENST00000507004 CEP170BQ9Y4F5 1589 aaPredicted RBP22.52■■□□□ 1.2
HMGCS1-203ENST00000507004 EIF2AK4Q9P2K8 1649 aaKnown RBP22.5■■□□□ 1.19
HMGCS1-203ENST00000507004 A2ML1A8K2U0 1454 aa22.5■■□□□ 1.19
HMGCS1-203ENST00000507004 SHANK2Q9UPX8 1470 aa22.5■■□□□ 1.19
HMGCS1-203ENST00000507004 TNRQ92752 1358 aa22.49■■□□□ 1.19
HMGCS1-203ENST00000507004 DUOX2Q9NRD8 1548 aa22.47■■□□□ 1.19
HMGCS1-203ENST00000507004 RNF17Q9BXT8 1623 aaKnown RBP22.47■■□□□ 1.19
HMGCS1-203ENST00000507004 PTPN23Q9H3S7 1636 aa22.46■■□□□ 1.19
HMGCS1-203ENST00000507004 ZC3H13Q5T200 1668 aaKnown RBP22.46■■□□□ 1.19
HMGCS1-203ENST00000507004 FGD6Q6ZV73 1430 aa22.45■■□□□ 1.18
HMGCS1-203ENST00000507004 TCOF1Q13428 1488 aaKnown RBP22.45■■□□□ 1.18
HMGCS1-203ENST00000507004 IQSEC2Q5JU85 1478 aa22.44■■□□□ 1.18
HMGCS1-203ENST00000507004 NLRP1Q9C000 1473 aa22.44■■□□□ 1.18
HMGCS1-203ENST00000507004 ABCC5O15440 1437 aa22.42■■□□□ 1.18
HMGCS1-203ENST00000507004 ERBINQ96RT1 1412 aa22.42■■□□□ 1.18
HMGCS1-203ENST00000507004 KIF15Q9NS87 1388 aa22.41■■□□□ 1.18
HMGCS1-203ENST00000507004 NCKAP5LQ9HCH0 1330 aa22.41■■□□□ 1.18
HMGCS1-203ENST00000507004 FBXO31Q5XUX0 539 aaPredicted RBP22.41■■□□□ 1.18
HMGCS1-203ENST00000507004 DAPK1P53355 1430 aa22.4■■□□□ 1.18
HMGCS1-203ENST00000507004 DNMT1P26358 1616 aaKnown RBP22.4■■□□□ 1.18
HMGCS1-203ENST00000507004 THEMISQ8N1K5 641 aaPredicted RBP22.4■■□□□ 1.18
HMGCS1-203ENST00000507004 ABCC3O15438 1527 aa22.4■■□□□ 1.18
HMGCS1-203ENST00000507004 CROCC2H7BZ55 1655 aa22.39■■□□□ 1.17
HMGCS1-203ENST00000507004 ANKRD30AQ9BXX3 1397 aa22.38■■□□□ 1.17
HMGCS1-203ENST00000507004 LTBP4Q8N2S1 1624 aa22.38■■□□□ 1.17
HMGCS1-203ENST00000507004 ANKLE2Q86XL3 938 aa22.35■■□□□ 1.17
HMGCS1-203ENST00000507004 SPATA31D1Q6ZQQ2 1576 aa22.34■■□□□ 1.17
HMGCS1-203ENST00000507004 RRP7BPQ9NSQ0 103 aa22.34■■□□□ 1.17
HMGCS1-203ENST00000507004 KANK1Q14678 1352 aa22.34■■□□□ 1.17
HMGCS1-203ENST00000507004 ARHGAP31Q2M1Z3 1444 aa22.33■■□□□ 1.17
HMGCS1-203ENST00000507004 PRDM15P57071 1507 aaPredicted RBP22.33■■□□□ 1.17
HMGCS1-203ENST00000507004 MROH1Q8NDA8 1641 aa22.33■■□□□ 1.17
HMGCS1-203ENST00000507004 UGGT1Q9NYU2 1555 aa22.33■■□□□ 1.16
HMGCS1-203ENST00000507004 ERVK-7P63135 1459 aa22.31■■□□□ 1.16
HMGCS1-203ENST00000507004 POLR1AO95602 1720 aaPredicted RBP22.29■■□□□ 1.16
HMGCS1-203ENST00000507004 ZNF335Q9H4Z2 1342 aaPredicted RBP22.28■■□□□ 1.16
HMGCS1-203ENST00000507004 ADGRL2O95490 1459 aa22.28■■□□□ 1.16
HMGCS1-203ENST00000507004 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.27■■□□□ 1.164e-9■■□□□ 14.1
HMGCS1-203ENST00000507004 DEPDC5O75140 1603 aa22.27■■□□□ 1.16
HMGCS1-203ENST00000507004 MED14O60244 1454 aa22.26■■□□□ 1.15
HMGCS1-203ENST00000507004 CEP152O94986 1710 aa22.26■■□□□ 1.15
HMGCS1-203ENST00000507004 FAM50AQ14320 339 aaKnown RBP22.25■■□□□ 1.15
HMGCS1-203ENST00000507004 CHIC2Q9UKJ5 165 aa22.25■■□□□ 1.15
HMGCS1-203ENST00000507004 LMTK2Q8IWU2 1503 aa22.23■■□□□ 1.15
HMGCS1-203ENST00000507004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.23■■□□□ 1.153e-26■■■■■ 33.2
HMGCS1-203ENST00000507004 NEURL4Q96JN8 1562 aa22.23■■□□□ 1.15
HMGCS1-203ENST00000507004 NPHP4O75161 1426 aaPredicted RBP22.23■■□□□ 1.15
HMGCS1-203ENST00000507004 CPS1P31327 1500 aa22.22■■□□□ 1.15
HMGCS1-203ENST00000507004 VWDEQ8N2E2 1590 aa22.18■■□□□ 1.14
HMGCS1-203ENST00000507004 ANKRD50Q9ULJ7 1429 aa22.18■■□□□ 1.14
HMGCS1-203ENST00000507004 CFAP65Q6ZU64 1925 aaKnown RBP22.16■■□□□ 1.14
HMGCS1-203ENST00000507004 UBAP1LF5GYI3 381 aa22.15■■□□□ 1.14
HMGCS1-203ENST00000507004 EID1Q9Y6B2 187 aa22.15■■□□□ 1.14
HMGCS1-203ENST00000507004 UBR1Q8IWV7 1749 aa22.14■■□□□ 1.14
HMGCS1-203ENST00000507004 ROCK1Q13464 1354 aa22.14■■□□□ 1.14
HMGCS1-203ENST00000507004 STAG3Q9UJ98 1225 aa22.14■■□□□ 1.13
HMGCS1-203ENST00000507004 SLIT1O75093 1534 aa22.14■■□□□ 1.13
HMGCS1-203ENST00000507004 IQGAP1P46940 1657 aa22.14■■□□□ 1.13
HMGCS1-203ENST00000507004 RPRD2Q5VT52 1461 aaKnown RBP22.13■■□□□ 1.13
HMGCS1-203ENST00000507004 SCAF11Q99590 1463 aaKnown RBP22.13■■□□□ 1.13
HMGCS1-203ENST00000507004 ARHGAP23Q9P227 1491 aa22.13■■□□□ 1.13
HMGCS1-203ENST00000507004 KDM5AP29375 1690 aaKnown RBP22.12■■□□□ 1.13
HMGCS1-203ENST00000507004 SLC52A1Q9NWF4 448 aa22.12■■□□□ 1.13
HMGCS1-203ENST00000507004 EFCAB6Q5THR3 1501 aa22.11■■□□□ 1.13
HMGCS1-203ENST00000507004 TOM1O60784 492 aa22.11■■□□□ 1.13
HMGCS1-203ENST00000507004 TXNDC2Q86VQ3 553 aa22.1■■□□□ 1.13
HMGCS1-203ENST00000507004 NOS1P29475 1434 aa22.09■■□□□ 1.13
HMGCS1-203ENST00000507004 TMEM2Q9UHN6 1383 aa22.08■■□□□ 1.12
HMGCS1-203ENST00000507004 IDI1Q13907 227 aa22.06■■□□□ 1.12
HMGCS1-203ENST00000507004 PIK3C2BO00750 1634 aa22.06■■□□□ 1.12
HMGCS1-203ENST00000507004 LTKP29376 864 aa22.03■■□□□ 1.12
HMGCS1-203ENST00000507004 TET3O43151 1660 aa22.03■■□□□ 1.12
HMGCS1-203ENST00000507004 SYNMO15061 1565 aa22.03■■□□□ 1.12
HMGCS1-203ENST00000507004 HDGFP51858 240 aaKnown RBP22.02■■□□□ 1.12
HMGCS1-203ENST00000507004 UNC13BO14795 1591 aa22.02■■□□□ 1.12
HMGCS1-203ENST00000507004 ADGRB3O60242 1522 aa22■■□□□ 1.11
HMGCS1-203ENST00000507004 GCC2Q8IWJ2 1684 aa21.98■■□□□ 1.11
HMGCS1-203ENST00000507004 DISP3Q9P2K9 1392 aa21.98■■□□□ 1.11
HMGCS1-203ENST00000507004 LRRC7Q96NW7 1537 aa21.97■■□□□ 1.11
HMGCS1-203ENST00000507004 SCAF1Q9H7N4 1312 aaKnown RBP21.95■■□□□ 1.1
HMGCS1-203ENST00000507004 IQGAP3Q86VI3 1631 aa21.94■■□□□ 1.1
HMGCS1-203ENST00000507004 NUP155O75694 1391 aa21.93■■□□□ 1.1
HMGCS1-203ENST00000507004 ITGAEP38570 1179 aa21.93■■□□□ 1.1
HMGCS1-203ENST00000507004 PIP4K2BP78356 416 aa21.93■■□□□ 1.1
HMGCS1-203ENST00000507004 RRBP1Q9P2E9 1410 aaKnown RBP21.92■■□□□ 1.1
HMGCS1-203ENST00000507004 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.92■■□□□ 1.1
HMGCS1-203ENST00000507004 KCNA6P17658 529 aa21.91■■□□□ 1.1
HMGCS1-203ENST00000507004 STRCP1A6NGW2 1772 aa21.9■■□□□ 1.1
HMGCS1-203ENST00000507004 PPP1R15AO75807 674 aaPredicted RBP21.88■■□□□ 1.09
HMGCS1-203ENST00000507004 PPARGC1BQ86YN6 1023 aaKnown RBP21.88■■□□□ 1.09
HMGCS1-203ENST00000507004 PLEKHG1Q9ULL1 1385 aa21.87■■□□□ 1.09
HMGCS1-203ENST00000507004 BCANQ96GW7 911 aa21.87■■□□□ 1.09
HMGCS1-203ENST00000507004 ZFYVE9O95405 1425 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms