RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 NPATQ14207 1427 aa14.13□□□□□ -0.15
HDAC3-211ENST00000491581 CROCC2H7BZ55 1655 aa14.12□□□□□ -0.15
HDAC3-211ENST00000491581 MYOM3Q5VTT5 1437 aa14.12□□□□□ -0.15
HDAC3-211ENST00000491581 LTBP4Q8N2S1 1624 aa14.12□□□□□ -0.15
HDAC3-211ENST00000491581 MROH1Q8NDA8 1641 aa14.12□□□□□ -0.15
HDAC3-211ENST00000491581 CFAP65Q6ZU64 1925 aaKnown RBP14.11□□□□□ -0.15
HDAC3-211ENST00000491581 MAST1Q9Y2H9 1570 aa14.11□□□□□ -0.15
HDAC3-211ENST00000491581 DNMT1P26358 1616 aaKnown RBP14.11□□□□□ -0.15
HDAC3-211ENST00000491581 MAP3K1Q13233 1512 aa14.1□□□□□ -0.15
HDAC3-211ENST00000491581 PTPN23Q9H3S7 1636 aa14.1□□□□□ -0.15
HDAC3-211ENST00000491581 KDM5DQ9BY66 1539 aa14.1□□□□□ -0.15
HDAC3-211ENST00000491581 ADRA2BP18089 450 aa14.09□□□□□ -0.15
HDAC3-211ENST00000491581 RNF17Q9BXT8 1623 aaKnown RBP14.08□□□□□ -0.15
HDAC3-211ENST00000491581 PTPRTO14522 1441 aa14.08□□□□□ -0.15
HDAC3-211ENST00000491581 ZNF335Q9H4Z2 1342 aaPredicted RBP14.07□□□□□ -0.16
HDAC3-211ENST00000491581 POLR1AO95602 1720 aaPredicted RBP14.06□□□□□ -0.16
HDAC3-211ENST00000491581 ABCC5O15440 1437 aa14.06□□□□□ -0.16
HDAC3-211ENST00000491581 ABCC3O15438 1527 aa14.05□□□□□ -0.16
HDAC3-211ENST00000491581 NEURL4Q96JN8 1562 aa14.05□□□□□ -0.16
HDAC3-211ENST00000491581 TSPY4P0CV99 314 aa14.05□□□□□ -0.16
HDAC3-211ENST00000491581 TSPY10P0CW01 314 aa14.05□□□□□ -0.16
HDAC3-211ENST00000491581 WASHC2CQ9Y4E1 1318 aa14.05□□□□□ -0.16
HDAC3-211ENST00000491581 A2ML1A8K2U0 1454 aa14.05□□□□□ -0.16
HDAC3-211ENST00000491581 PZPP20742 1482 aa14.05□□□□□ -0.16
HDAC3-211ENST00000491581 TNRQ92752 1358 aa14.04□□□□□ -0.16
HDAC3-211ENST00000491581 MIA2Q96PC5 1412 aa14.04□□□□□ -0.16
HDAC3-211ENST00000491581 TCOF1Q13428 1488 aaKnown RBP14.04□□□□□ -0.16
HDAC3-211ENST00000491581 EIF2AK4Q9P2K8 1649 aaKnown RBP14.04□□□□□ -0.16
HDAC3-211ENST00000491581 RRP7BPQ9NSQ0 103 aa14.03□□□□□ -0.16
HDAC3-211ENST00000491581 CHIC2Q9UKJ5 165 aa14.03□□□□□ -0.16
HDAC3-211ENST00000491581 DMRT2Q9Y5R5 561 aa14.03□□□□□ -0.16
HDAC3-211ENST00000491581 PPARGC1BQ86YN6 1023 aaKnown RBP14.02□□□□□ -0.17
HDAC3-211ENST00000491581 PLA2R1Q13018 1463 aa14.01□□□□□ -0.17
HDAC3-211ENST00000491581 DAPK1P53355 1430 aa14.01□□□□□ -0.17
HDAC3-211ENST00000491581 FGD6Q6ZV73 1430 aa14.01□□□□□ -0.17
HDAC3-211ENST00000491581 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.01□□□□□ -0.17
HDAC3-211ENST00000491581 RSPH4AQ5TD94 716 aa14.01□□□□□ -0.17
HDAC3-211ENST00000491581 ZC3H13Q5T200 1668 aaKnown RBP14.01□□□□□ -0.17
HDAC3-211ENST00000491581 DUOX2Q9NRD8 1548 aa14□□□□□ -0.17
HDAC3-211ENST00000491581 KIF15Q9NS87 1388 aa13.99□□□□□ -0.17
HDAC3-211ENST00000491581 STRCP1A6NGW2 1772 aa13.99□□□□□ -0.17
HDAC3-211ENST00000491581 SPATA31D1Q6ZQQ2 1576 aa13.98□□□□□ -0.17
HDAC3-211ENST00000491581 UGGT1Q9NYU2 1555 aa13.98□□□□□ -0.17
HDAC3-211ENST00000491581 APLP2Q06481 763 aa13.98□□□□□ -0.17
HDAC3-211ENST00000491581 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.98□□□□□ -0.17
HDAC3-211ENST00000491581 ERVK-7P63135 1459 aa13.98□□□□□ -0.17
HDAC3-211ENST00000491581 UBR1Q8IWV7 1749 aa13.98□□□□□ -0.17
HDAC3-211ENST00000491581 DEPDC5O75140 1603 aa13.97□□□□□ -0.17
HDAC3-211ENST00000491581 PRDM15P57071 1507 aaPredicted RBP13.96□□□□□ -0.17
HDAC3-211ENST00000491581 SHANK2Q9UPX8 1470 aa13.96□□□□□ -0.17
HDAC3-211ENST00000491581 FAM135AQ9P2D6 1515 aa13.95□□□□□ -0.18
HDAC3-211ENST00000491581 PKD2Q13563 968 aa13.94□□□□□ -0.18
HDAC3-211ENST00000491581 FAM50AQ14320 339 aaKnown RBP13.94□□□□□ -0.18
HDAC3-211ENST00000491581 VWDEQ8N2E2 1590 aa13.94□□□□□ -0.18
HDAC3-211ENST00000491581 PIK3C2BO00750 1634 aa13.93□□□□□ -0.18
HDAC3-211ENST00000491581 IQGAP1P46940 1657 aa13.93□□□□□ -0.18
HDAC3-211ENST00000491581 NLRP1Q9C000 1473 aa13.93□□□□□ -0.18
HDAC3-211ENST00000491581 ERBINQ96RT1 1412 aa13.91□□□□□ -0.18
HDAC3-211ENST00000491581 SYNMO15061 1565 aa13.9□□□□□ -0.18
HDAC3-211ENST00000491581 NPHP4O75161 1426 aaPredicted RBP13.9□□□□□ -0.19
HDAC3-211ENST00000491581 UBAP1LF5GYI3 381 aa13.89□□□□□ -0.19
HDAC3-211ENST00000491581 MYO5BQ9ULV0 1848 aa13.89□□□□□ -0.19
HDAC3-211ENST00000491581 ALKQ9UM73 1620 aa13.89□□□□□ -0.19
HDAC3-211ENST00000491581 ILDR2Q71H61 639 aa13.88□□□□□ -0.19
HDAC3-211ENST00000491581 LTKP29376 864 aa13.87□□□□□ -0.19
HDAC3-211ENST00000491581 ANKLE2Q86XL3 938 aa13.87□□□□□ -0.19
HDAC3-211ENST00000491581 THEMISQ8N1K5 641 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-211ENST00000491581 MED14O60244 1454 aa13.87□□□□□ -0.19
HDAC3-211ENST00000491581 IQSEC2Q5JU85 1478 aa13.87□□□□□ -0.19
HDAC3-211ENST00000491581 ANKRD30AQ9BXX3 1397 aa13.86□□□□□ -0.19
HDAC3-211ENST00000491581 XIRP1Q702N8 1843 aaKnown RBP13.86□□□□□ -0.19
HDAC3-211ENST00000491581 ITGAEP38570 1179 aa13.86□□□□□ -0.19
HDAC3-211ENST00000491581 ADGRL2O95490 1459 aa13.86□□□□□ -0.19
HDAC3-211ENST00000491581 EFCAB6Q5THR3 1501 aa13.85□□□□□ -0.19
HDAC3-211ENST00000491581 PIP4K2BP78356 416 aa13.85□□□□□ -0.19
HDAC3-211ENST00000491581 SCAF1Q9H7N4 1312 aaKnown RBP13.85□□□□□ -0.19
HDAC3-211ENST00000491581 DISP3Q9P2K9 1392 aa13.84□□□□□ -0.19
HDAC3-211ENST00000491581 ARHGAP31Q2M1Z3 1444 aa13.83□□□□□ -0.2
HDAC3-211ENST00000491581 ARHGAP23Q9P227 1491 aa13.83□□□□□ -0.2
HDAC3-211ENST00000491581 LMTK2Q8IWU2 1503 aa13.83□□□□□ -0.2
HDAC3-211ENST00000491581 GCC2Q8IWJ2 1684 aa13.82□□□□□ -0.2
HDAC3-211ENST00000491581 SCAF11Q99590 1463 aaKnown RBP13.82□□□□□ -0.2
HDAC3-211ENST00000491581 CPS1P31327 1500 aa13.82□□□□□ -0.2
HDAC3-211ENST00000491581 IDI1Q13907 227 aa13.82□□□□□ -0.2
HDAC3-211ENST00000491581 E9PCH4 1651 aa13.82□□□□□ -0.2
HDAC3-211ENST00000491581 ANKRD50Q9ULJ7 1429 aa13.81□□□□□ -0.2
HDAC3-211ENST00000491581 SLIT1O75093 1534 aa13.81□□□□□ -0.2
HDAC3-211ENST00000491581 LRRC7Q96NW7 1537 aa13.81□□□□□ -0.2
HDAC3-211ENST00000491581 TXNDC2Q86VQ3 553 aa13.81□□□□□ -0.2
HDAC3-211ENST00000491581 RBM33Q96EV2 1170 aaKnown RBP13.81□□□□□ -0.2
HDAC3-211ENST00000491581 KANK1Q14678 1352 aa13.81□□□□□ -0.2
HDAC3-211ENST00000491581 UNC13BO14795 1591 aa13.8□□□□□ -0.2
HDAC3-211ENST00000491581 TET3O43151 1660 aa13.79□□□□□ -0.2
HDAC3-211ENST00000491581 HSPA1LP34931 641 aa13.79□□□□□ -0.2
HDAC3-211ENST00000491581 NOS1P29475 1434 aa13.79□□□□□ -0.2
HDAC3-211ENST00000491581 ADGRB3O60242 1522 aa13.78□□□□□ -0.2
HDAC3-211ENST00000491581 SLC26A8Q96RN1 970 aa13.77□□□□□ -0.21
HDAC3-211ENST00000491581 TMEM2Q9UHN6 1383 aa13.77□□□□□ -0.21
HDAC3-211ENST00000491581 STAG3Q9UJ98 1225 aa13.76□□□□□ -0.21
HDAC3-211ENST00000491581 KDM5AP29375 1690 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms