RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 NISCHQ9Y2I1 1504 aa22.36■■□□□ 1.17
HDAC3-211ENST00000491581 ABCC9O60706 1549 aa20.05■□□□□ 0.8
HDAC3-211ENST00000491581 CCDC180Q9P1Z9 1646 aa20■□□□□ 0.79
HDAC3-211ENST00000491581 AEBP2Q6ZN18 517 aaPredicted RBP19.44■□□□□ 0.7
HDAC3-211ENST00000491581 RB1CC1Q8TDY2 1594 aa18.98■□□□□ 0.63
HDAC3-211ENST00000491581 DCAF8L2P0C7V8 631 aa18.92■□□□□ 0.62
HDAC3-211ENST00000491581 NACADO15069 1562 aa18.83■□□□□ 0.6
HDAC3-211ENST00000491581 UNC13AQ9UPW8 1703 aa18.78■□□□□ 0.6
HDAC3-211ENST00000491581 DNAJC5BQ9UF47 199 aa18.78■□□□□ 0.6
HDAC3-211ENST00000491581 PABPN1Q86U42 306 aaKnown RBP eCLIP18.69■□□□□ 0.58
HDAC3-211ENST00000491581 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
HDAC3-211ENST00000491581 ZCCHC6Q5VYS8 1495 aaKnown RBP18.56■□□□□ 0.56
HDAC3-211ENST00000491581 MYO15BQ96JP2 1530 aa18.5■□□□□ 0.55
HDAC3-211ENST00000491581 SCRIBQ14160 1630 aa18.39■□□□□ 0.53
HDAC3-211ENST00000491581 DCAF1Q9Y4B6 1507 aa18.35■□□□□ 0.53
HDAC3-211ENST00000491581 CHIC1Q5VXU3 224 aa18.14■□□□□ 0.49
HDAC3-211ENST00000491581 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
HDAC3-211ENST00000491581 EIF4G1Q04637 1599 aaKnown RBP18.04■□□□□ 0.48
HDAC3-211ENST00000491581 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
HDAC3-211ENST00000491581 CECR2Q9BXF3 1484 aa17.96■□□□□ 0.47
HDAC3-211ENST00000491581 SMARCA4P51532 1647 aa17.47■□□□□ 0.39
HDAC3-211ENST00000491581 ATAD2BQ9ULI0 1458 aa17.42■□□□□ 0.38
HDAC3-211ENST00000491581 NCAPD3P42695 1498 aa17.39■□□□□ 0.37
HDAC3-211ENST00000491581 MROH2BQ7Z745 1585 aa17.33■□□□□ 0.37
HDAC3-211ENST00000491581 BAZ1AQ9NRL2 1556 aaPredicted RBP17.31■□□□□ 0.36
HDAC3-211ENST00000491581 NESP48681 1621 aa17.3■□□□□ 0.36
HDAC3-211ENST00000491581 SMARCA2P51531 1590 aa17.3■□□□□ 0.36
HDAC3-211ENST00000491581 HMGXB3Q12766 1538 aa17.28■□□□□ 0.36
HDAC3-211ENST00000491581 BAZ1BQ9UIG0 1483 aaKnown RBP17.24■□□□□ 0.35
HDAC3-211ENST00000491581 PEG3Q9GZU2 1588 aa17.2■□□□□ 0.34
HDAC3-211ENST00000491581 ERCC6Q03468 1493 aa17.19■□□□□ 0.34
HDAC3-211ENST00000491581 WIZO95785 1651 aa17.18■□□□□ 0.34
HDAC3-211ENST00000491581 KIF21AQ7Z4S6 1674 aa17.09■□□□□ 0.33
HDAC3-211ENST00000491581 CUX2O14529 1486 aa17.05■□□□□ 0.32
HDAC3-211ENST00000491581 THOC2Q8NI27 1593 aaKnown RBP17.04■□□□□ 0.32
HDAC3-211ENST00000491581 LAMC3Q9Y6N6 1575 aa17.01■□□□□ 0.31
HDAC3-211ENST00000491581 DNAJC5Q9H3Z4 198 aa16.99■□□□□ 0.31
HDAC3-211ENST00000491581 RSF1Q96T23 1441 aaPredicted RBP16.94■□□□□ 0.3
HDAC3-211ENST00000491581 CADPSQ9ULU8 1353 aa16.88■□□□□ 0.29
HDAC3-211ENST00000491581 PDS5BQ9NTI5 1447 aa16.84■□□□□ 0.29
HDAC3-211ENST00000491581 TOP2AP11388 1531 aaKnown RBP16.83■□□□□ 0.28
HDAC3-211ENST00000491581 MRC2Q9UBG0 1479 aa16.78■□□□□ 0.28
HDAC3-211ENST00000491581 WDR62O43379 1518 aa16.75■□□□□ 0.27
HDAC3-211ENST00000491581 FANCD2Q9BXW9 1451 aa16.74■□□□□ 0.27
HDAC3-211ENST00000491581 CEP164Q9UPV0 1460 aa16.73■□□□□ 0.27
HDAC3-211ENST00000491581 CFTRP13569 1480 aa16.72■□□□□ 0.27
HDAC3-211ENST00000491581 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
HDAC3-211ENST00000491581 URB2Q14146 1524 aaKnown RBP16.66■□□□□ 0.26
HDAC3-211ENST00000491581 PRDM2Q13029 1718 aa16.66■□□□□ 0.26
HDAC3-211ENST00000491581 SENP3Q9H4L4 574 aaPredicted RBP16.66■□□□□ 0.26
HDAC3-211ENST00000491581 ZNF608Q9ULD9 1512 aaPredicted RBP16.48■□□□□ 0.23
HDAC3-211ENST00000491581 TOPBP1Q92547 1522 aa16.46■□□□□ 0.23
HDAC3-211ENST00000491581 TRIM41Q8WV44 630 aa16.42■□□□□ 0.22
HDAC3-211ENST00000491581 DNMBPQ6XZF7 1577 aa16.38■□□□□ 0.21
HDAC3-211ENST00000491581 EIF4G3O43432 1585 aaKnown RBP16.37■□□□□ 0.21
HDAC3-211ENST00000491581 PHF23Q9BUL5 403 aaPredicted RBP16.35■□□□□ 0.21
HDAC3-211ENST00000491581 IFT140Q96RY7 1462 aa16.35■□□□□ 0.21
HDAC3-211ENST00000491581 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
HDAC3-211ENST00000491581 SUPT5HO00267 1087 aaKnown RBP16.33■□□□□ 0.2
HDAC3-211ENST00000491581 RAD54L2Q9Y4B4 1467 aa16.31■□□□□ 0.2
HDAC3-211ENST00000491581 AQRO60306 1485 aaKnown RBP eCLIP16.3■□□□□ 0.2
HDAC3-211ENST00000491581 POLA1P09884 1462 aaPredicted RBP16.3■□□□□ 0.2
HDAC3-211ENST00000491581 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
HDAC3-211ENST00000491581 CHD1O14646 1710 aa16.29■□□□□ 0.2
HDAC3-211ENST00000491581 CUX1P39880 1505 aa16.26■□□□□ 0.19
HDAC3-211ENST00000491581 ABCC8Q09428 1581 aa16.26■□□□□ 0.19
HDAC3-211ENST00000491581 RIMBP3CA6NJZ7 1639 aa16.24■□□□□ 0.19
HDAC3-211ENST00000491581 RIMBP3BA6NNM3 1639 aa16.24■□□□□ 0.19
HDAC3-211ENST00000491581 RIMBP3Q9UFD9 1639 aa16.24■□□□□ 0.19
HDAC3-211ENST00000491581 FGD5Q6ZNL6 1462 aa16.23■□□□□ 0.19
HDAC3-211ENST00000491581 TDRD9Q8NDG6 1382 aaKnown RBP16.21■□□□□ 0.19
HDAC3-211ENST00000491581 SOGA1O94964 1423 aa16.19■□□□□ 0.18
HDAC3-211ENST00000491581 WDR97A6NE52 1622 aa16.16■□□□□ 0.18
HDAC3-211ENST00000491581 FBLN2P98095 1184 aa16.15■□□□□ 0.18
HDAC3-211ENST00000491581 ARHGEF11O15085 1522 aa16.14■□□□□ 0.18
HDAC3-211ENST00000491581 SNAPC4Q5SXM2 1469 aa16.12■□□□□ 0.17
HDAC3-211ENST00000491581 PBRM1Q86U86 1689 aa16.1■□□□□ 0.17
HDAC3-211ENST00000491581 SYNJ1O43426 1573 aa16.05■□□□□ 0.16
HDAC3-211ENST00000491581 ARAP1Q96P48 1450 aa16.03■□□□□ 0.16
HDAC3-211ENST00000491581 ABCA5Q8WWZ7 1642 aa16.02■□□□□ 0.16
HDAC3-211ENST00000491581 CYB5RLQ6IPT4 315 aa16.02■□□□□ 0.16
HDAC3-211ENST00000491581 CLASP1Q7Z460 1538 aa16■□□□□ 0.15
HDAC3-211ENST00000491581 GRIN2BQ13224 1484 aa16■□□□□ 0.15
HDAC3-211ENST00000491581 BIVM-ERCC5R4GMW8 1640 aa16■□□□□ 0.15
HDAC3-211ENST00000491581 GAPVD1Q14C86 1478 aa15.99■□□□□ 0.15
HDAC3-211ENST00000491581 ABCA10Q8WWZ4 1543 aa15.97■□□□□ 0.15
HDAC3-211ENST00000491581 TOP2BQ02880 1626 aa15.97■□□□□ 0.15
HDAC3-211ENST00000491581 MAGI1Q96QZ7 1491 aaPredicted RBP15.97■□□□□ 0.15
HDAC3-211ENST00000491581 CHMP7Q8WUX9 453 aaPredicted RBP15.96■□□□□ 0.15
HDAC3-211ENST00000491581 SYNJ2O15056 1496 aa15.95■□□□□ 0.14
HDAC3-211ENST00000491581 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.14
HDAC3-211ENST00000491581 ERCC6L2Q5T890 1561 aa15.91■□□□□ 0.14
HDAC3-211ENST00000491581 ADAMTS12P58397 1594 aa15.89■□□□□ 0.13
HDAC3-211ENST00000491581 CEP170Q5SW79 1584 aa15.87■□□□□ 0.13
HDAC3-211ENST00000491581 GRIN2AQ12879 1464 aa15.84■□□□□ 0.13
HDAC3-211ENST00000491581 TRHP20396 242 aaPredicted RBP15.8■□□□□ 0.12
HDAC3-211ENST00000491581 NUP160Q12769 1436 aa15.76■□□□□ 0.11
HDAC3-211ENST00000491581 ERICH3Q5RHP9 1530 aa15.75■□□□□ 0.11
HDAC3-211ENST00000491581 FHAD1B1AJZ9 1412 aa15.75■□□□□ 0.11
HDAC3-211ENST00000491581 SHROOM2Q13796 1616 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms