RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 TNRQ92752 1358 aa26.08■■□□□ 1.77
DDX56-210ENST00000479440 NEURL4Q96JN8 1562 aa26.08■■□□□ 1.77
DDX56-210ENST00000479440 DHX29Q7Z478 1369 aaKnown RBP26.07■■□□□ 1.76
DDX56-210ENST00000479440 PZPP20742 1482 aa26.07■■□□□ 1.76
DDX56-210ENST00000479440 MED1Q15648 1581 aaPredicted RBP26.07■■□□□ 1.76
DDX56-210ENST00000479440 SCAF1Q9H7N4 1312 aaKnown RBP26.06■■□□□ 1.76
DDX56-210ENST00000479440 ZNF644Q9H582 1327 aaPredicted RBP26.05■■□□□ 1.76
DDX56-210ENST00000479440 CEP162Q5TB80 1403 aa26.05■■□□□ 1.76
DDX56-210ENST00000479440 SHANK2Q9UPX8 1470 aa26.04■■□□□ 1.76
DDX56-210ENST00000479440 TOM1O60784 492 aa26.04■■□□□ 1.76
DDX56-210ENST00000479440 CCDC141Q6ZP82 1450 aa26.04■■□□□ 1.76
DDX56-210ENST00000479440 NLRP1Q9C000 1473 aa26■■□□□ 1.75
DDX56-210ENST00000479440 PIP4K2BP78356 416 aa26■■□□□ 1.75
DDX56-210ENST00000479440 KIF3BO15066 747 aa25.99■■□□□ 1.75
DDX56-210ENST00000479440 HSPA1LP34931 641 aa25.99■■□□□ 1.75
DDX56-210ENST00000479440 CAMSAP2Q08AD1 1489 aa25.98■■□□□ 1.75
DDX56-210ENST00000479440 VWDEQ8N2E2 1590 aa25.97■■□□□ 1.75
DDX56-210ENST00000479440 DEPDC5O75140 1603 aa25.96■■□□□ 1.75
DDX56-210ENST00000479440 UGGT1Q9NYU2 1555 aa25.96■■□□□ 1.75
DDX56-210ENST00000479440 FBXO31Q5XUX0 539 aaPredicted RBP25.96■■□□□ 1.75
DDX56-210ENST00000479440 ANKLE2Q86XL3 938 aa25.96■■□□□ 1.75
DDX56-210ENST00000479440 WASHC2CQ9Y4E1 1318 aa25.95■■□□□ 1.75
DDX56-210ENST00000479440 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.95■■□□□ 1.74
DDX56-210ENST00000479440 MED14O60244 1454 aa25.93■■□□□ 1.74
DDX56-210ENST00000479440 RSPH4AQ5TD94 716 aa25.93■■□□□ 1.74
DDX56-210ENST00000479440 THEMISQ8N1K5 641 aaPredicted RBP25.93■■□□□ 1.74
DDX56-210ENST00000479440 NPHP4O75161 1426 aaPredicted RBP25.93■■□□□ 1.74
DDX56-210ENST00000479440 MIA2Q96PC5 1412 aa25.93■■□□□ 1.74
DDX56-210ENST00000479440 NCOA2Q15596 1464 aa25.9■■□□□ 1.74
DDX56-210ENST00000479440 ARHGEF5Q12774 1597 aa25.9■■□□□ 1.74
DDX56-210ENST00000479440 IQGAP1P46940 1657 aa25.9■■□□□ 1.74
DDX56-210ENST00000479440 ZC3H13Q5T200 1668 aaKnown RBP25.88■■□□□ 1.73
DDX56-210ENST00000479440 SYNMO15061 1565 aa25.88■■□□□ 1.73
DDX56-210ENST00000479440 RNF17Q9BXT8 1623 aaKnown RBP25.86■■□□□ 1.73
DDX56-210ENST00000479440 PHF23Q9BUL5 403 aaPredicted RBP25.86■■□□□ 1.73
DDX56-210ENST00000479440 ALKQ9UM73 1620 aa25.85■■□□□ 1.73
DDX56-210ENST00000479440 ABCC3O15438 1527 aa25.82■■□□□ 1.72
DDX56-210ENST00000479440 TSPY4P0CV99 314 aa25.81■■□□□ 1.72
DDX56-210ENST00000479440 TSPY10P0CW01 314 aa25.81■■□□□ 1.72
DDX56-210ENST00000479440 EIF2AK4Q9P2K8 1649 aaKnown RBP25.81■■□□□ 1.72
DDX56-210ENST00000479440 MAST1Q9Y2H9 1570 aa25.79■■□□□ 1.72
DDX56-210ENST00000479440 ERVK-7P63135 1459 aa25.79■■□□□ 1.72
DDX56-210ENST00000479440 LRRC7Q96NW7 1537 aa25.78■■□□□ 1.72
DDX56-210ENST00000479440 STRCP1A6NGW2 1772 aa25.74■■□□□ 1.71
DDX56-210ENST00000479440 MROH1Q8NDA8 1641 aa25.71■■□□□ 1.71
DDX56-210ENST00000479440 SCAF11Q99590 1463 aaKnown RBP25.71■■□□□ 1.71
DDX56-210ENST00000479440 UBR1Q8IWV7 1749 aa25.71■■□□□ 1.71
DDX56-210ENST00000479440 CEP152O94986 1710 aa25.68■■□□□ 1.7
DDX56-210ENST00000479440 LRRC9Q6ZRR7 1453 aa25.66■■□□□ 1.7
DDX56-210ENST00000479440 SENP3Q9H4L4 574 aaPredicted RBP25.66■■□□□ 1.7
DDX56-210ENST00000479440 SLIT1O75093 1534 aa25.65■■□□□ 1.7
DDX56-210ENST00000479440 DUOX2Q9NRD8 1548 aa25.64■■□□□ 1.7
DDX56-210ENST00000479440 ARHGAP23Q9P227 1491 aa25.64■■□□□ 1.69
DDX56-210ENST00000479440 PRDM15P57071 1507 aaPredicted RBP25.63■■□□□ 1.69
DDX56-210ENST00000479440 ARHGAP31Q2M1Z3 1444 aa25.6■■□□□ 1.69
DDX56-210ENST00000479440 VPS8Q8N3P4 1428 aa25.59■■□□□ 1.69
DDX56-210ENST00000479440 MYOM3Q5VTT5 1437 aa25.58■■□□□ 1.69
DDX56-210ENST00000479440 ERBINQ96RT1 1412 aa25.56■■□□□ 1.68
DDX56-210ENST00000479440 TXNDC2Q86VQ3 553 aa25.56■■□□□ 1.68
DDX56-210ENST00000479440 EID1Q9Y6B2 187 aa25.56■■□□□ 1.68
DDX56-210ENST00000479440 LTKP29376 864 aa25.54■■□□□ 1.68
DDX56-210ENST00000479440 KIF15Q9NS87 1388 aa25.54■■□□□ 1.68
DDX56-210ENST00000479440 XIRP1Q702N8 1843 aaKnown RBP25.53■■□□□ 1.68
DDX56-210ENST00000479440 MAP3K1Q13233 1512 aa25.53■■□□□ 1.68
DDX56-210ENST00000479440 PIK3C2BO00750 1634 aa25.52■■□□□ 1.68
DDX56-210ENST00000479440 CROCC2H7BZ55 1655 aa25.52■■□□□ 1.68
DDX56-210ENST00000479440 FAM135BQ49AJ0 1406 aa25.51■■□□□ 1.67
DDX56-210ENST00000479440 KDM5AP29375 1690 aaKnown RBP25.5■■□□□ 1.67
DDX56-210ENST00000479440 TMEM2Q9UHN6 1383 aa25.5■■□□□ 1.67
DDX56-210ENST00000479440 CFAP65Q6ZU64 1925 aaKnown RBP25.49■■□□□ 1.67
DDX56-210ENST00000479440 EFCAB6Q5THR3 1501 aa25.47■■□□□ 1.67
DDX56-210ENST00000479440 KANK1Q14678 1352 aa25.47■■□□□ 1.67
DDX56-210ENST00000479440 RGS17Q9UGC6 210 aaPredicted RBP25.47■■□□□ 1.67
DDX56-210ENST00000479440 STAG3Q9UJ98 1225 aa25.47■■□□□ 1.67
DDX56-210ENST00000479440 TMEM94Q12767 1356 aa25.44■■□□□ 1.66
DDX56-210ENST00000479440 LMTK2Q8IWU2 1503 aa25.42■■□□□ 1.66
DDX56-210ENST00000479440 ROBO1Q9Y6N7 1651 aa25.42■■□□□ 1.66
DDX56-210ENST00000479440 KANK4Q5T7N3 995 aaPredicted RBP25.42■■□□□ 1.66
DDX56-210ENST00000479440 ABCC5O15440 1437 aa25.42■■□□□ 1.66
DDX56-210ENST00000479440 NKTRP30414 1462 aaKnown RBP25.41■■□□□ 1.66
DDX56-210ENST00000479440 PTPN23Q9H3S7 1636 aa25.41■■□□□ 1.66
DDX56-210ENST00000479440 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.4■■□□□ 1.664e-8■□□□□ 10.5
DDX56-210ENST00000479440 RRP7BPQ9NSQ0 103 aa25.4■■□□□ 1.66
DDX56-210ENST00000479440 NWD1Q149M9 1564 aa25.39■■□□□ 1.66
DDX56-210ENST00000479440 ADGRB3O60242 1522 aa25.39■■□□□ 1.66
DDX56-210ENST00000479440 KCNA6P17658 529 aa25.39■■□□□ 1.66
DDX56-210ENST00000479440 DAPK1P53355 1430 aa25.38■■□□□ 1.65
DDX56-210ENST00000479440 TET3O43151 1660 aa25.37■■□□□ 1.65
DDX56-210ENST00000479440 PROSER2Q86WR7 435 aaPredicted RBP25.34■■□□□ 1.65
DDX56-210ENST00000479440 MSH6P52701 1360 aa25.33■■□□□ 1.65
DDX56-210ENST00000479440 IDI1Q13907 227 aa25.33■■□□□ 1.65
DDX56-210ENST00000479440 POTEAQ6S8J7 498 aa25.33■■□□□ 1.65
DDX56-210ENST00000479440 ANKRD30AQ9BXX3 1397 aa25.32■■□□□ 1.64
DDX56-210ENST00000479440 NOS1P29475 1434 aa25.32■■□□□ 1.64
DDX56-210ENST00000479440 SLC26A8Q96RN1 970 aa25.32■■□□□ 1.64
DDX56-210ENST00000479440 PHLPP1O60346 1717 aa25.29■■□□□ 1.64
DDX56-210ENST00000479440 FGD6Q6ZV73 1430 aa25.29■■□□□ 1.64
DDX56-210ENST00000479440 RBM33Q96EV2 1170 aaKnown RBP25.26■■□□□ 1.63
DDX56-210ENST00000479440 JCADQ9P266 1359 aa25.26■■□□□ 1.63
DDX56-210ENST00000479440 BCANQ96GW7 911 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms