RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 NISCHQ9Y2I1 1504 aa41.05■■■■■ 4.16
DDX56-210ENST00000479440 ABCC9O60706 1549 aa37.44■■■■□ 3.58
DDX56-210ENST00000479440 CCDC180Q9P1Z9 1646 aa37.11■■■■□ 3.53
DDX56-210ENST00000479440 RB1CC1Q8TDY2 1594 aa35.53■■■■□ 3.28
DDX56-210ENST00000479440 DNAJC5BQ9UF47 199 aa35.36■■■■□ 3.25
DDX56-210ENST00000479440 NACADO15069 1562 aa35.17■■■■□ 3.22
DDX56-210ENST00000479440 DCAF8L2P0C7V8 631 aa34.71■■■■□ 3.15
DDX56-210ENST00000479440 PABPN1Q86U42 306 aaKnown RBP eCLIP34.71■■■■□ 3.151e-6■■□□□ 13.9
DDX56-210ENST00000479440 UNC13AQ9UPW8 1703 aa34.64■■■■□ 3.14
DDX56-210ENST00000479440 MYO15BQ96JP2 1530 aa34.55■■■■□ 3.12
DDX56-210ENST00000479440 BICRAQ9NZM4 1560 aa34.43■■■■□ 3.1
DDX56-210ENST00000479440 SHROOM4Q9ULL8 1493 aa34.08■■■■□ 3.05
DDX56-210ENST00000479440 ZCCHC6Q5VYS8 1495 aaKnown RBP33.97■■■■□ 3.03
DDX56-210ENST00000479440 DCAF1Q9Y4B6 1507 aa33.94■■■■□ 3.02
DDX56-210ENST00000479440 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3.01
DDX56-210ENST00000479440 CECR2Q9BXF3 1484 aa33.81■■■■□ 3
DDX56-210ENST00000479440 SCRIBQ14160 1630 aa33.74■■■□□ 2.99
DDX56-210ENST00000479440 EIF4G1Q04637 1599 aaKnown RBP33.67■■■□□ 2.98
DDX56-210ENST00000479440 DNAJC5Q9H3Z4 198 aa32.89■■■□□ 2.86
DDX56-210ENST00000479440 CUX2O14529 1486 aa32.55■■■□□ 2.8
DDX56-210ENST00000479440 ERCC6Q03468 1493 aa32.43■■■□□ 2.78
DDX56-210ENST00000479440 NCAPD3P42695 1498 aa32.42■■■□□ 2.78
DDX56-210ENST00000479440 ATAD2BQ9ULI0 1458 aa32.25■■■□□ 2.75
DDX56-210ENST00000479440 HMGXB3Q12766 1538 aa32.21■■■□□ 2.75
DDX56-210ENST00000479440 SMARCA2P51531 1590 aa32.21■■■□□ 2.75
DDX56-210ENST00000479440 SMARCA4P51532 1647 aa32.15■■■□□ 2.74
DDX56-210ENST00000479440 NESP48681 1621 aa32■■■□□ 2.71
DDX56-210ENST00000479440 BAZ1BQ9UIG0 1483 aaKnown RBP31.97■■■□□ 2.71
DDX56-210ENST00000479440 BAZ1AQ9NRL2 1556 aaPredicted RBP31.94■■■□□ 2.7
DDX56-210ENST00000479440 THOC2Q8NI27 1593 aaKnown RBP31.87■■■□□ 2.69
DDX56-210ENST00000479440 PEG3Q9GZU2 1588 aa31.85■■■□□ 2.69
DDX56-210ENST00000479440 LAMC3Q9Y6N6 1575 aa31.82■■■□□ 2.68
DDX56-210ENST00000479440 KIF21AQ7Z4S6 1674 aa31.64■■■□□ 2.65
DDX56-210ENST00000479440 PDS5BQ9NTI5 1447 aa31.63■■■□□ 2.65
DDX56-210ENST00000479440 MROH2BQ7Z745 1585 aa31.59■■■□□ 2.65
DDX56-210ENST00000479440 CADPSQ9ULU8 1353 aa31.41■■■□□ 2.62
DDX56-210ENST00000479440 MRC2Q9UBG0 1479 aa31.4■■■□□ 2.62
DDX56-210ENST00000479440 WDR62O43379 1518 aa31.34■■■□□ 2.61
DDX56-210ENST00000479440 TRIM41Q8WV44 630 aa31.27■■■□□ 2.6
DDX56-210ENST00000479440 CEP164Q9UPV0 1460 aa31.2■■■□□ 2.58
DDX56-210ENST00000479440 WIZO95785 1651 aa31.19■■■□□ 2.58
DDX56-210ENST00000479440 FANCD2Q9BXW9 1451 aa31.08■■■□□ 2.57
DDX56-210ENST00000479440 CFTRP13569 1480 aa30.97■■■□□ 2.55
DDX56-210ENST00000479440 OSCARQ8IYS5 282 aa30.87■■■□□ 2.53
DDX56-210ENST00000479440 TOP2AP11388 1531 aaKnown RBP30.85■■■□□ 2.53
DDX56-210ENST00000479440 URB2Q14146 1524 aaKnown RBP30.83■■■□□ 2.53
DDX56-210ENST00000479440 RSF1Q96T23 1441 aaPredicted RBP30.77■■■□□ 2.52
DDX56-210ENST00000479440 PRDM2Q13029 1718 aa30.67■■■□□ 2.5
DDX56-210ENST00000479440 RIMBP3CA6NJZ7 1639 aa30.58■■■□□ 2.49
DDX56-210ENST00000479440 RIMBP3BA6NNM3 1639 aa30.58■■■□□ 2.49
DDX56-210ENST00000479440 RIMBP3Q9UFD9 1639 aa30.58■■■□□ 2.49
DDX56-210ENST00000479440 IFT140Q96RY7 1462 aa30.58■■■□□ 2.49
DDX56-210ENST00000479440 ZNF608Q9ULD9 1512 aaPredicted RBP30.49■■■□□ 2.47
DDX56-210ENST00000479440 ARHGEF11O15085 1522 aa30.45■■■□□ 2.47
DDX56-210ENST00000479440 TOPBP1Q92547 1522 aa30.43■■■□□ 2.46
DDX56-210ENST00000479440 CCDC88BA6NC98 1476 aa30.41■■■□□ 2.46
DDX56-210ENST00000479440 EIF4G3O43432 1585 aaKnown RBP30.39■■■□□ 2.46
DDX56-210ENST00000479440 ABCC8Q09428 1581 aa30.38■■■□□ 2.45
DDX56-210ENST00000479440 DNMBPQ6XZF7 1577 aa30.32■■■□□ 2.45
DDX56-210ENST00000479440 CHD1O14646 1710 aa30.21■■■□□ 2.43
DDX56-210ENST00000479440 TARBP1Q13395 1621 aaKnown RBP30.19■■■□□ 2.42
DDX56-210ENST00000479440 CYB5RLQ6IPT4 315 aa30.15■■■□□ 2.42
DDX56-210ENST00000479440 AQRO60306 1485 aaKnown RBP eCLIP30.14■■■□□ 2.422e-8■■■■□ 20.7
DDX56-210ENST00000479440 ARAP1Q96P48 1450 aa30.11■■■□□ 2.41
DDX56-210ENST00000479440 POLA1P09884 1462 aaPredicted RBP30.1■■■□□ 2.41
DDX56-210ENST00000479440 FBLN2P98095 1184 aa30.03■■■□□ 2.4
DDX56-210ENST00000479440 TRHP20396 242 aaPredicted RBP30■■■□□ 2.39
DDX56-210ENST00000479440 WDR97A6NE52 1622 aa29.97■■■□□ 2.39
DDX56-210ENST00000479440 RAD54L2Q9Y4B4 1467 aa29.94■■■□□ 2.38
DDX56-210ENST00000479440 SOGA1O94964 1423 aa29.91■■■□□ 2.38
DDX56-210ENST00000479440 SNAPC4Q5SXM2 1469 aa29.91■■■□□ 2.38
DDX56-210ENST00000479440 CLASP1Q7Z460 1538 aa29.88■■■□□ 2.37
DDX56-210ENST00000479440 TDRD9Q8NDG6 1382 aaKnown RBP29.88■■■□□ 2.37
DDX56-210ENST00000479440 SYNJ1O43426 1573 aa29.86■■■□□ 2.37
DDX56-210ENST00000479440 FGD5Q6ZNL6 1462 aa29.84■■■□□ 2.37
DDX56-210ENST00000479440 MAGI1Q96QZ7 1491 aaPredicted RBP29.84■■■□□ 2.37
DDX56-210ENST00000479440 GRIN2BQ13224 1484 aa29.77■■■□□ 2.36
DDX56-210ENST00000479440 CHMP7Q8WUX9 453 aaPredicted RBP29.76■■■□□ 2.35
DDX56-210ENST00000479440 CUX1P39880 1505 aa29.73■■■□□ 2.35
DDX56-210ENST00000479440 SYNJ2O15056 1496 aa29.73■■■□□ 2.35
DDX56-210ENST00000479440 PBRM1Q86U86 1689 aa29.63■■■□□ 2.33
DDX56-210ENST00000479440 GAPVD1Q14C86 1478 aa29.58■■■□□ 2.33
DDX56-210ENST00000479440 ABCA5Q8WWZ7 1642 aa29.51■■■□□ 2.31
DDX56-210ENST00000479440 ABCA10Q8WWZ4 1543 aa29.5■■■□□ 2.31
DDX56-210ENST00000479440 AEBP2Q6ZN18 517 aaPredicted RBP29.49■■■□□ 2.31
DDX56-210ENST00000479440 GRIN2AQ12879 1464 aa29.38■■■□□ 2.29
DDX56-210ENST00000479440 ADAMTS12P58397 1594 aa29.34■■■□□ 2.29
DDX56-210ENST00000479440 ERCC6L2Q5T890 1561 aa29.3■■■□□ 2.28
DDX56-210ENST00000479440 NUP160Q12769 1436 aa29.29■■■□□ 2.28
DDX56-210ENST00000479440 WRNQ14191 1432 aaPredicted RBP eCLIP29.28■■■□□ 2.28
DDX56-210ENST00000479440 CEP170Q5SW79 1584 aa29.28■■■□□ 2.28
DDX56-210ENST00000479440 SHROOM2Q13796 1616 aa29.22■■■□□ 2.27
DDX56-210ENST00000479440 FHAD1B1AJZ9 1412 aa29.2■■■□□ 2.27
DDX56-210ENST00000479440 BIVM-ERCC5R4GMW8 1640 aa29.19■■■□□ 2.26
DDX56-210ENST00000479440 TOP2BQ02880 1626 aa29.16■■■□□ 2.26
DDX56-210ENST00000479440 ERICH3Q5RHP9 1530 aa29.14■■■□□ 2.25
DDX56-210ENST00000479440 KIF13AQ9H1H9 1805 aa29.03■■■□□ 2.24
DDX56-210ENST00000479440 PRG4Q92954 1404 aaPredicted RBP29.02■■■□□ 2.24
DDX56-210ENST00000479440 SUPT5HO00267 1087 aaKnown RBP29■■■□□ 2.23
DDX56-210ENST00000479440 RUSC2Q8N2Y8 1516 aa28.94■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms