RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 KIF3BO15066 747 aa27.77■■■□□ 2.04
VIM-204ENST00000478746 MBD5Q9P267 1494 aa27.76■■■□□ 2.04
VIM-204ENST00000478746 TNRQ92752 1358 aa27.75■■■□□ 2.03
VIM-204ENST00000478746 ANKLE2Q86XL3 938 aa27.73■■■□□ 2.03
VIM-204ENST00000478746 CPS1P31327 1500 aa27.72■■■□□ 2.03
VIM-204ENST00000478746 SHANK2Q9UPX8 1470 aa27.71■■■□□ 2.03
VIM-204ENST00000478746 TIAM1Q13009 1591 aa27.71■■■□□ 2.03
VIM-204ENST00000478746 WASHC2CQ9Y4E1 1318 aa27.7■■■□□ 2.03
VIM-204ENST00000478746 THEMISQ8N1K5 641 aaPredicted RBP27.7■■■□□ 2.02
VIM-204ENST00000478746 POLR1AO95602 1720 aaPredicted RBP27.68■■■□□ 2.02
VIM-204ENST00000478746 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.67■■■□□ 2.02
VIM-204ENST00000478746 PZPP20742 1482 aa27.67■■■□□ 2.02
VIM-204ENST00000478746 NEURL4Q96JN8 1562 aa27.66■■■□□ 2.02
VIM-204ENST00000478746 RSPH4AQ5TD94 716 aa27.66■■■□□ 2.02
VIM-204ENST00000478746 MED1Q15648 1581 aaPredicted RBP27.65■■■□□ 2.02
VIM-204ENST00000478746 EHBP1L1Q8N3D4 1523 aa27.64■■■□□ 2.02
VIM-204ENST00000478746 CEP162Q5TB80 1403 aa27.64■■■□□ 2.02
VIM-204ENST00000478746 MIA2Q96PC5 1412 aa27.64■■■□□ 2.02
VIM-204ENST00000478746 KDM5DQ9BY66 1539 aa27.63■■■□□ 2.01
VIM-204ENST00000478746 CCDC141Q6ZP82 1450 aa27.61■■■□□ 2.01
VIM-204ENST00000478746 FAM135AQ9P2D6 1515 aa27.61■■■□□ 2.01
VIM-204ENST00000478746 NLRP1Q9C000 1473 aa27.59■■■□□ 2.01
VIM-204ENST00000478746 NPHP4O75161 1426 aaPredicted RBP27.58■■■□□ 2.01
VIM-204ENST00000478746 VWDEQ8N2E2 1590 aa27.57■■■□□ 2
VIM-204ENST00000478746 UGGT1Q9NYU2 1555 aa27.57■■■□□ 2
VIM-204ENST00000478746 TSPY4P0CV99 314 aa27.57■■■□□ 2
VIM-204ENST00000478746 TSPY10P0CW01 314 aa27.57■■■□□ 2
VIM-204ENST00000478746 PHF23Q9BUL5 403 aaPredicted RBP27.57■■■□□ 2
VIM-204ENST00000478746 MED14O60244 1454 aa27.56■■■□□ 2
VIM-204ENST00000478746 CAMSAP2Q08AD1 1489 aa27.54■■■□□ 2
VIM-204ENST00000478746 DEPDC5O75140 1603 aa27.52■■■□□ 2
VIM-204ENST00000478746 NCOA2Q15596 1464 aa27.51■■■□□ 2
VIM-204ENST00000478746 SENP3Q9H4L4 574 aaPredicted RBP27.49■■□□□ 1.99
VIM-204ENST00000478746 ALKQ9UM73 1620 aa27.47■■□□□ 1.99
VIM-204ENST00000478746 IQGAP1P46940 1657 aa27.46■■□□□ 1.99
VIM-204ENST00000478746 ARHGEF5Q12774 1597 aa27.44■■□□□ 1.98
VIM-204ENST00000478746 LRRC7Q96NW7 1537 aa27.43■■□□□ 1.98
VIM-204ENST00000478746 STRCP1A6NGW2 1772 aa27.4■■□□□ 1.98
VIM-204ENST00000478746 ABCC3O15438 1527 aa27.39■■□□□ 1.98
VIM-204ENST00000478746 RNF17Q9BXT8 1623 aaKnown RBP27.38■■□□□ 1.97
VIM-204ENST00000478746 ERVK-7P63135 1459 aa27.37■■□□□ 1.97
VIM-204ENST00000478746 CFAP65Q6ZU64 1925 aaKnown RBP27.35■■□□□ 1.97
VIM-204ENST00000478746 ZC3H13Q5T200 1668 aaKnown RBP27.35■■□□□ 1.97
VIM-204ENST00000478746 TXNDC2Q86VQ3 553 aa27.33■■□□□ 1.97
VIM-204ENST00000478746 SYNMO15061 1565 aa27.33■■□□□ 1.97
VIM-204ENST00000478746 LTKP29376 864 aa27.32■■□□□ 1.96
VIM-204ENST00000478746 MAST1Q9Y2H9 1570 aa27.31■■□□□ 1.96
VIM-204ENST00000478746 SCAF11Q99590 1463 aaKnown RBP27.3■■□□□ 1.96
VIM-204ENST00000478746 EIF2AK4Q9P2K8 1649 aaKnown RBP27.29■■□□□ 1.96
VIM-204ENST00000478746 UBR1Q8IWV7 1749 aa27.28■■□□□ 1.96
VIM-204ENST00000478746 EID1Q9Y6B2 187 aa27.28■■□□□ 1.96
VIM-204ENST00000478746 RGS17Q9UGC6 210 aaPredicted RBP27.27■■□□□ 1.96
VIM-204ENST00000478746 LRRC9Q6ZRR7 1453 aa27.25■■□□□ 1.95
VIM-204ENST00000478746 CEP152O94986 1710 aa27.25■■□□□ 1.95
VIM-204ENST00000478746 MROH1Q8NDA8 1641 aa27.25■■□□□ 1.95
VIM-204ENST00000478746 ARHGAP23Q9P227 1491 aa27.23■■□□□ 1.95
VIM-204ENST00000478746 SLIT1O75093 1534 aa27.22■■□□□ 1.95
VIM-204ENST00000478746 DUOX2Q9NRD8 1548 aa27.21■■□□□ 1.95
VIM-204ENST00000478746 ARHGAP31Q2M1Z3 1444 aa27.19■■□□□ 1.94
VIM-204ENST00000478746 MYOM3Q5VTT5 1437 aa27.19■■□□□ 1.94
VIM-204ENST00000478746 KANK4Q5T7N3 995 aaPredicted RBP27.19■■□□□ 1.94
VIM-204ENST00000478746 STAG3Q9UJ98 1225 aa27.19■■□□□ 1.94
VIM-204ENST00000478746 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.18■■□□□ 1.94
VIM-204ENST00000478746 FAM135BQ49AJ0 1406 aa27.17■■□□□ 1.94
VIM-204ENST00000478746 XIRP1Q702N8 1843 aaKnown RBP27.17■■□□□ 1.94
VIM-204ENST00000478746 RRP7BPQ9NSQ0 103 aa27.16■■□□□ 1.94
VIM-204ENST00000478746 VPS8Q8N3P4 1428 aa27.15■■□□□ 1.94
VIM-204ENST00000478746 KIF15Q9NS87 1388 aa27.14■■□□□ 1.94
VIM-204ENST00000478746 TMEM2Q9UHN6 1383 aa27.14■■□□□ 1.94
VIM-204ENST00000478746 KCNA6P17658 529 aa27.12■■□□□ 1.93
VIM-204ENST00000478746 TMEM94Q12767 1356 aa27.11■■□□□ 1.93
VIM-204ENST00000478746 PROSER2Q86WR7 435 aaPredicted RBP27.11■■□□□ 1.93
VIM-204ENST00000478746 POTEAQ6S8J7 498 aa27.1■■□□□ 1.93
VIM-204ENST00000478746 PRDM15P57071 1507 aaPredicted RBP27.1■■□□□ 1.93
VIM-204ENST00000478746 KANK1Q14678 1352 aa27.09■■□□□ 1.93
VIM-204ENST00000478746 PIK3C2BO00750 1634 aa27.09■■□□□ 1.93
VIM-204ENST00000478746 ERBINQ96RT1 1412 aa27.09■■□□□ 1.93
VIM-204ENST00000478746 IDI1Q13907 227 aa27.09■■□□□ 1.93
VIM-204ENST00000478746 SLC26A8Q96RN1 970 aa27.08■■□□□ 1.93
VIM-204ENST00000478746 MAP3K1Q13233 1512 aa27.07■■□□□ 1.92
VIM-204ENST00000478746 RBM33Q96EV2 1170 aaKnown RBP27.06■■□□□ 1.92
VIM-204ENST00000478746 ABCC5O15440 1437 aa27.06■■□□□ 1.92
VIM-204ENST00000478746 LOC105371045A0A1W2PR82 267 aa27.03■■□□□ 1.92
VIM-204ENST00000478746 EFCAB6Q5THR3 1501 aa27.03■■□□□ 1.92
VIM-204ENST00000478746 BCANQ96GW7 911 aa27.01■■□□□ 1.91
VIM-204ENST00000478746 ROBO1Q9Y6N7 1651 aa27■■□□□ 1.91
VIM-204ENST00000478746 TET3O43151 1660 aa26.99■■□□□ 1.91
VIM-204ENST00000478746 KDM5AP29375 1690 aaKnown RBP26.99■■□□□ 1.91
VIM-204ENST00000478746 CHIC2Q9UKJ5 165 aa26.98■■□□□ 1.91
VIM-204ENST00000478746 CROCC2H7BZ55 1655 aa26.97■■□□□ 1.91
VIM-204ENST00000478746 SLAIN2Q9P270 581 aa26.96■■□□□ 1.91
VIM-204ENST00000478746 DAPK1P53355 1430 aa26.96■■□□□ 1.91
VIM-204ENST00000478746 PTPN23Q9H3S7 1636 aa26.95■■□□□ 1.91
VIM-204ENST00000478746 SLC52A1Q9NWF4 448 aa26.95■■□□□ 1.9
VIM-204ENST00000478746 MSH6P52701 1360 aa26.95■■□□□ 1.9
VIM-204ENST00000478746 LMTK2Q8IWU2 1503 aa26.95■■□□□ 1.9
VIM-204ENST00000478746 ANKRD30AQ9BXX3 1397 aa26.94■■□□□ 1.9
VIM-204ENST00000478746 APLP2Q06481 763 aa26.93■■□□□ 1.9
VIM-204ENST00000478746 NKTRP30414 1462 aaKnown RBP26.92■■□□□ 1.9
VIM-204ENST00000478746 NOS1P29475 1434 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms