RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NISCHQ9Y2I1 1504 aa43.6■■■■■ 4.57
VIM-204ENST00000478746 ABCC9O60706 1549 aa39.86■■■■□ 3.97
VIM-204ENST00000478746 CCDC180Q9P1Z9 1646 aa39.26■■■■□ 3.88
VIM-204ENST00000478746 DNAJC5BQ9UF47 199 aa37.89■■■■□ 3.66
VIM-204ENST00000478746 RB1CC1Q8TDY2 1594 aa37.68■■■■□ 3.62
VIM-204ENST00000478746 NACADO15069 1562 aa37.3■■■■□ 3.56
VIM-204ENST00000478746 DCAF8L2P0C7V8 631 aa37.2■■■■□ 3.55
VIM-204ENST00000478746 PABPN1Q86U42 306 aaKnown RBP eCLIP37.1■■■■□ 3.53
VIM-204ENST00000478746 UNC13AQ9UPW8 1703 aa36.77■■■■□ 3.48
VIM-204ENST00000478746 MYO15BQ96JP2 1530 aa36.6■■■■□ 3.45
VIM-204ENST00000478746 BICRAQ9NZM4 1560 aa36.57■■■■□ 3.45
VIM-204ENST00000478746 SHROOM4Q9ULL8 1493 aa36.01■■■■□ 3.36
VIM-204ENST00000478746 ZCCHC6Q5VYS8 1495 aaKnown RBP35.99■■■■□ 3.35
VIM-204ENST00000478746 DCAF1Q9Y4B6 1507 aa35.95■■■■□ 3.35
VIM-204ENST00000478746 CECR2Q9BXF3 1484 aa35.95■■■■□ 3.35
VIM-204ENST00000478746 CC2D2AQ9P2K1 1620 aa35.94■■■■□ 3.34
VIM-204ENST00000478746 SCRIBQ14160 1630 aa35.79■■■■□ 3.32
VIM-204ENST00000478746 EIF4G1Q04637 1599 aaKnown RBP35.73■■■■□ 3.31
VIM-204ENST00000478746 DNAJC5Q9H3Z4 198 aa35.18■■■■□ 3.22
VIM-204ENST00000478746 CUX2O14529 1486 aa34.52■■■■□ 3.12
VIM-204ENST00000478746 NCAPD3P42695 1498 aa34.47■■■■□ 3.11
VIM-204ENST00000478746 ERCC6Q03468 1493 aa34.46■■■■□ 3.11
VIM-204ENST00000478746 ATAD2BQ9ULI0 1458 aa34.28■■■■□ 3.08
VIM-204ENST00000478746 SMARCA2P51531 1590 aa34.15■■■■□ 3.06
VIM-204ENST00000478746 HMGXB3Q12766 1538 aa34.1■■■■□ 3.05
VIM-204ENST00000478746 NESP48681 1621 aa34.08■■■■□ 3.05
VIM-204ENST00000478746 SMARCA4P51532 1647 aa34.08■■■■□ 3.05
VIM-204ENST00000478746 BAZ1BQ9UIG0 1483 aaKnown RBP33.93■■■■□ 3.02
VIM-204ENST00000478746 BAZ1AQ9NRL2 1556 aaPredicted RBP33.86■■■■□ 3.01
VIM-204ENST00000478746 THOC2Q8NI27 1593 aaKnown RBP33.76■■■□□ 2.99
VIM-204ENST00000478746 PEG3Q9GZU2 1588 aa33.74■■■□□ 2.99
VIM-204ENST00000478746 LAMC3Q9Y6N6 1575 aa33.74■■■□□ 2.99
VIM-204ENST00000478746 PDS5BQ9NTI5 1447 aa33.63■■■□□ 2.97
VIM-204ENST00000478746 MROH2BQ7Z745 1585 aa33.59■■■□□ 2.97
VIM-204ENST00000478746 KIF21AQ7Z4S6 1674 aa33.57■■■□□ 2.96
VIM-204ENST00000478746 TRIM41Q8WV44 630 aa33.45■■■□□ 2.95
VIM-204ENST00000478746 CADPSQ9ULU8 1353 aa33.43■■■□□ 2.94
VIM-204ENST00000478746 MRC2Q9UBG0 1479 aa33.31■■■□□ 2.92
VIM-204ENST00000478746 WDR62O43379 1518 aa33.21■■■□□ 2.91
VIM-204ENST00000478746 WIZO95785 1651 aa33.15■■■□□ 2.9
VIM-204ENST00000478746 CEP164Q9UPV0 1460 aa33.09■■■□□ 2.89
VIM-204ENST00000478746 FANCD2Q9BXW9 1451 aa33.02■■■□□ 2.88
VIM-204ENST00000478746 OSCARQ8IYS5 282 aa32.99■■■□□ 2.87
VIM-204ENST00000478746 CFTRP13569 1480 aa32.91■■■□□ 2.86
VIM-204ENST00000478746 URB2Q14146 1524 aaKnown RBP32.76■■■□□ 2.83
VIM-204ENST00000478746 RSF1Q96T23 1441 aaPredicted RBP32.74■■■□□ 2.83
VIM-204ENST00000478746 TOP2AP11388 1531 aaKnown RBP32.67■■■□□ 2.82
VIM-204ENST00000478746 RIMBP3CA6NJZ7 1639 aa32.48■■■□□ 2.79
VIM-204ENST00000478746 RIMBP3BA6NNM3 1639 aa32.48■■■□□ 2.79
VIM-204ENST00000478746 RIMBP3Q9UFD9 1639 aa32.48■■■□□ 2.79
VIM-204ENST00000478746 IFT140Q96RY7 1462 aa32.46■■■□□ 2.79
VIM-204ENST00000478746 PRDM2Q13029 1718 aa32.45■■■□□ 2.78
VIM-204ENST00000478746 ZNF608Q9ULD9 1512 aaPredicted RBP32.45■■■□□ 2.78
VIM-204ENST00000478746 CCDC88BA6NC98 1476 aa32.37■■■□□ 2.77
VIM-204ENST00000478746 ARHGEF11O15085 1522 aa32.34■■■□□ 2.77
VIM-204ENST00000478746 TOPBP1Q92547 1522 aa32.32■■■□□ 2.76
VIM-204ENST00000478746 CYB5RLQ6IPT4 315 aa32.26■■■□□ 2.75
VIM-204ENST00000478746 ABCC8Q09428 1581 aa32.26■■■□□ 2.75
VIM-204ENST00000478746 EIF4G3O43432 1585 aaKnown RBP32.19■■■□□ 2.74
VIM-204ENST00000478746 AQRO60306 1485 aaKnown RBP eCLIP32.14■■■□□ 2.74
VIM-204ENST00000478746 DNMBPQ6XZF7 1577 aa32.14■■■□□ 2.74
VIM-204ENST00000478746 FBLN2P98095 1184 aa32.11■■■□□ 2.73
VIM-204ENST00000478746 TRHP20396 242 aaPredicted RBP32.08■■■□□ 2.73
VIM-204ENST00000478746 CHD1O14646 1710 aa32.06■■■□□ 2.72
VIM-204ENST00000478746 TARBP1Q13395 1621 aaKnown RBP32.04■■■□□ 2.72
VIM-204ENST00000478746 ARAP1Q96P48 1450 aa31.98■■■□□ 2.71
VIM-204ENST00000478746 POLA1P09884 1462 aaPredicted RBP31.96■■■□□ 2.71
VIM-204ENST00000478746 RAD54L2Q9Y4B4 1467 aa31.89■■■□□ 2.7
VIM-204ENST00000478746 TDRD9Q8NDG6 1382 aaKnown RBP31.88■■■□□ 2.69
VIM-204ENST00000478746 SOGA1O94964 1423 aa31.87■■■□□ 2.69
VIM-204ENST00000478746 CHMP7Q8WUX9 453 aaPredicted RBP31.78■■■□□ 2.68
VIM-204ENST00000478746 SNAPC4Q5SXM2 1469 aa31.74■■■□□ 2.67
VIM-204ENST00000478746 FGD5Q6ZNL6 1462 aa31.69■■■□□ 2.66
VIM-204ENST00000478746 CLASP1Q7Z460 1538 aa31.68■■■□□ 2.66
VIM-204ENST00000478746 WDR97A6NE52 1622 aa31.67■■■□□ 2.66
VIM-204ENST00000478746 SYNJ1O43426 1573 aa31.64■■■□□ 2.66
VIM-204ENST00000478746 MAGI1Q96QZ7 1491 aaPredicted RBP31.64■■■□□ 2.66
VIM-204ENST00000478746 GRIN2BQ13224 1484 aa31.61■■■□□ 2.65
VIM-204ENST00000478746 CUX1P39880 1505 aa31.58■■■□□ 2.65
VIM-204ENST00000478746 SYNJ2O15056 1496 aa31.55■■■□□ 2.64
VIM-204ENST00000478746 AEBP2Q6ZN18 517 aaPredicted RBP31.53■■■□□ 2.64
VIM-204ENST00000478746 GAPVD1Q14C86 1478 aa31.45■■■□□ 2.62
VIM-204ENST00000478746 PBRM1Q86U86 1689 aa31.38■■■□□ 2.61
VIM-204ENST00000478746 ABCA10Q8WWZ4 1543 aa31.3■■■□□ 2.6
VIM-204ENST00000478746 ABCA5Q8WWZ7 1642 aa31.24■■■□□ 2.59
VIM-204ENST00000478746 GRIN2AQ12879 1464 aa31.19■■■□□ 2.58
VIM-204ENST00000478746 ERCC6L2Q5T890 1561 aa31.17■■■□□ 2.58
VIM-204ENST00000478746 WRNQ14191 1432 aaPredicted RBP eCLIP31.13■■■□□ 2.57
VIM-204ENST00000478746 CEP170Q5SW79 1584 aa31.09■■■□□ 2.57
VIM-204ENST00000478746 NUP160Q12769 1436 aa31.09■■■□□ 2.57
VIM-204ENST00000478746 ADAMTS12P58397 1594 aa31.05■■■□□ 2.56
VIM-204ENST00000478746 SUPT5HO00267 1087 aaKnown RBP31.03■■■□□ 2.56
VIM-204ENST00000478746 FHAD1B1AJZ9 1412 aa31.02■■■□□ 2.56
VIM-204ENST00000478746 SHROOM2Q13796 1616 aa30.97■■■□□ 2.55
VIM-204ENST00000478746 TOP2BQ02880 1626 aa30.92■■■□□ 2.54
VIM-204ENST00000478746 BIVM-ERCC5R4GMW8 1640 aa30.91■■■□□ 2.54
VIM-204ENST00000478746 JPH4Q96JJ6 628 aa30.9■■■□□ 2.54
VIM-204ENST00000478746 ERICH3Q5RHP9 1530 aa30.89■■■□□ 2.54
VIM-204ENST00000478746 PRG4Q92954 1404 aaPredicted RBP30.89■■■□□ 2.53
VIM-204ENST00000478746 KIF13AQ9H1H9 1805 aa30.84■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms