RNA–Protein interactions for RNA: ENST00000476994.1

SREBF1-211, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-211ENST00000476994 RTEL1-TNFRSF6BF6WH68 1400 aa26.87■■□□□ 1.89
SREBF1-211ENST00000476994 PPP6R1Q9UPN7 881 aa26.86■■□□□ 1.89
SREBF1-211ENST00000476994 SHANK2Q9UPX8 1470 aa26.86■■□□□ 1.89
SREBF1-211ENST00000476994 PTPRTO14522 1441 aa26.84■■□□□ 1.89
SREBF1-211ENST00000476994 TRIM26Q12899 539 aaPredicted RBP26.84■■□□□ 1.89
SREBF1-211ENST00000476994 RSPH4AQ5TD94 716 aa26.84■■□□□ 1.89
SREBF1-211ENST00000476994 CAMSAP1Q5T5Y3 1602 aa26.79■■□□□ 1.88
SREBF1-211ENST00000476994 NCOA1Q15788 1441 aa26.79■■□□□ 1.88
SREBF1-211ENST00000476994 MYO3AQ8NEV4 1616 aa26.79■■□□□ 1.88
SREBF1-211ENST00000476994 ZNF142P52746 1687 aaPredicted RBP26.79■■□□□ 1.88
SREBF1-211ENST00000476994 ADGRL2O95490 1459 aa26.78■■□□□ 1.88
SREBF1-211ENST00000476994 DHX29Q7Z478 1369 aaKnown RBP26.77■■□□□ 1.88
SREBF1-211ENST00000476994 TSPY4P0CV99 314 aa26.74■■□□□ 1.87
SREBF1-211ENST00000476994 TSPY10P0CW01 314 aa26.74■■□□□ 1.87
SREBF1-211ENST00000476994 CEP170BQ9Y4F5 1589 aaPredicted RBP26.73■■□□□ 1.87
SREBF1-211ENST00000476994 FAM135AQ9P2D6 1515 aa26.71■■□□□ 1.87
SREBF1-211ENST00000476994 GCC2Q8IWJ2 1684 aa26.71■■□□□ 1.87
SREBF1-211ENST00000476994 KIF3BO15066 747 aa26.71■■□□□ 1.87
SREBF1-211ENST00000476994 ITGAEP38570 1179 aa26.7■■□□□ 1.86
SREBF1-211ENST00000476994 ROCK1Q13464 1354 aa26.7■■□□□ 1.86
SREBF1-211ENST00000476994 PLA2R1Q13018 1463 aa26.68■■□□□ 1.86
SREBF1-211ENST00000476994 KDM5DQ9BY66 1539 aa26.67■■□□□ 1.86
SREBF1-211ENST00000476994 PKD2Q13563 968 aa26.67■■□□□ 1.86
SREBF1-211ENST00000476994 WASHC2CQ9Y4E1 1318 aa26.65■■□□□ 1.86
SREBF1-211ENST00000476994 CHIC2Q9UKJ5 165 aa26.64■■□□□ 1.86
SREBF1-211ENST00000476994 NCKAP5LQ9HCH0 1330 aa26.64■■□□□ 1.85
SREBF1-211ENST00000476994 A2ML1A8K2U0 1454 aa26.62■■□□□ 1.85
SREBF1-211ENST00000476994 IQSEC2Q5JU85 1478 aa26.62■■□□□ 1.85
SREBF1-211ENST00000476994 LTBP4Q8N2S1 1624 aa26.62■■□□□ 1.85
SREBF1-211ENST00000476994 HFM1A2PYH4 1435 aa26.62■■□□□ 1.85
SREBF1-211ENST00000476994 ANKRD30AQ9BXX3 1397 aa26.61■■□□□ 1.85
SREBF1-211ENST00000476994 NAIPQ13075 1403 aa26.61■■□□□ 1.85
SREBF1-211ENST00000476994 PZPP20742 1482 aa26.59■■□□□ 1.85
SREBF1-211ENST00000476994 TNRQ92752 1358 aa26.58■■□□□ 1.85
SREBF1-211ENST00000476994 KIF15Q9NS87 1388 aa26.58■■□□□ 1.84
SREBF1-211ENST00000476994 POLR1AO95602 1720 aaPredicted RBP26.57■■□□□ 1.84
SREBF1-211ENST00000476994 DUOX2Q9NRD8 1548 aa26.57■■□□□ 1.84
SREBF1-211ENST00000476994 PCGF6Q9BYE7 350 aa26.56■■□□□ 1.84
SREBF1-211ENST00000476994 EIF2AK4Q9P2K8 1649 aaKnown RBP26.56■■□□□ 1.84
SREBF1-211ENST00000476994 ZC3H13Q5T200 1668 aaKnown RBP26.56■■□□□ 1.84
SREBF1-211ENST00000476994 RRP7BPQ9NSQ0 103 aa26.55■■□□□ 1.84
SREBF1-211ENST00000476994 RNF17Q9BXT8 1623 aaKnown RBP26.54■■□□□ 1.84
SREBF1-211ENST00000476994 FBXO31Q5XUX0 539 aaPredicted RBP26.52■■□□□ 1.84
SREBF1-211ENST00000476994 ZNF335Q9H4Z2 1342 aaPredicted RBP26.5■■□□□ 1.83
SREBF1-211ENST00000476994 NLRP1Q9C000 1473 aa26.49■■□□□ 1.83
SREBF1-211ENST00000476994 ERBINQ96RT1 1412 aa26.49■■□□□ 1.83
SREBF1-211ENST00000476994 SETD5Q9C0A6 1442 aa26.49■■□□□ 1.83
SREBF1-211ENST00000476994 ANKRD50Q9ULJ7 1429 aa26.48■■□□□ 1.83
SREBF1-211ENST00000476994 THEMISQ8N1K5 641 aaPredicted RBP26.48■■□□□ 1.83
SREBF1-211ENST00000476994 DEPDC5O75140 1603 aa26.47■■□□□ 1.83
SREBF1-211ENST00000476994 UGGT1Q9NYU2 1555 aa26.46■■□□□ 1.83
SREBF1-211ENST00000476994 CFAP65Q6ZU64 1925 aaKnown RBP26.45■■□□□ 1.83
SREBF1-211ENST00000476994 ABCC3O15438 1527 aa26.44■■□□□ 1.82
SREBF1-211ENST00000476994 ANKLE2Q86XL3 938 aa26.44■■□□□ 1.82
SREBF1-211ENST00000476994 UNC13BO14795 1591 aa26.44■■□□□ 1.82
SREBF1-211ENST00000476994 MROH1Q8NDA8 1641 aa26.43■■□□□ 1.82
SREBF1-211ENST00000476994 CEP152O94986 1710 aa26.43■■□□□ 1.82
SREBF1-211ENST00000476994 RAB3GAP2Q9H2M9 1393 aa26.43■■□□□ 1.82
SREBF1-211ENST00000476994 UBAP1LF5GYI3 381 aa26.41■■□□□ 1.82
SREBF1-211ENST00000476994 SPATA31D1Q6ZQQ2 1576 aa26.39■■□□□ 1.82
SREBF1-211ENST00000476994 NEURL4Q96JN8 1562 aa26.39■■□□□ 1.82
SREBF1-211ENST00000476994 DISP3Q9P2K9 1392 aa26.38■■□□□ 1.81
SREBF1-211ENST00000476994 CPS1P31327 1500 aa26.36■■□□□ 1.81
SREBF1-211ENST00000476994 PRDM15P57071 1507 aaPredicted RBP26.36■■□□□ 1.81
SREBF1-211ENST00000476994 ERVK-7P63135 1459 aa26.35■■□□□ 1.81
SREBF1-211ENST00000476994 VWDEQ8N2E2 1590 aa26.34■■□□□ 1.81
SREBF1-211ENST00000476994 HRCP23327 699 aa26.34■■□□□ 1.81
SREBF1-211ENST00000476994 IQGAP1P46940 1657 aa26.33■■□□□ 1.81
SREBF1-211ENST00000476994 IQGAP3Q86VI3 1631 aa26.32■■□□□ 1.8
SREBF1-211ENST00000476994 NPHP4O75161 1426 aaPredicted RBP26.31■■□□□ 1.8
SREBF1-211ENST00000476994 KANK1Q14678 1352 aa26.31■■□□□ 1.8
SREBF1-211ENST00000476994 MED14O60244 1454 aa26.3■■□□□ 1.8
SREBF1-211ENST00000476994 UBR1Q8IWV7 1749 aa26.28■■□□□ 1.8
SREBF1-211ENST00000476994 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.27■■□□□ 1.8
SREBF1-211ENST00000476994 TOM1O60784 492 aa26.26■■□□□ 1.79
SREBF1-211ENST00000476994 ARHGAP31Q2M1Z3 1444 aa26.25■■□□□ 1.79
SREBF1-211ENST00000476994 SCAF1Q9H7N4 1312 aaKnown RBP26.25■■□□□ 1.79
SREBF1-211ENST00000476994 LMTK2Q8IWU2 1503 aa26.21■■□□□ 1.79
SREBF1-211ENST00000476994 TET3O43151 1660 aa26.21■■□□□ 1.79
SREBF1-211ENST00000476994 ACIN1Q9UKV3 1341 aaKnown RBP26.2■■□□□ 1.79
SREBF1-211ENST00000476994 STAG3Q9UJ98 1225 aa26.19■■□□□ 1.78
SREBF1-211ENST00000476994 NUP155O75694 1391 aa26.19■■□□□ 1.78
SREBF1-211ENST00000476994 PIP4K2BP78356 416 aa26.18■■□□□ 1.78
SREBF1-211ENST00000476994 SCAF11Q99590 1463 aaKnown RBP26.17■■□□□ 1.78
SREBF1-211ENST00000476994 EID1Q9Y6B2 187 aa26.17■■□□□ 1.78
SREBF1-211ENST00000476994 SYNMO15061 1565 aa26.16■■□□□ 1.78
SREBF1-211ENST00000476994 E9PCH4 1651 aa26.15■■□□□ 1.78
SREBF1-211ENST00000476994 PIK3C2BO00750 1634 aa26.15■■□□□ 1.78
SREBF1-211ENST00000476994 SLIT1O75093 1534 aa26.14■■□□□ 1.78
SREBF1-211ENST00000476994 EFCAB6Q5THR3 1501 aa26.14■■□□□ 1.78
SREBF1-211ENST00000476994 TXNDC2Q86VQ3 553 aa26.14■■□□□ 1.78
SREBF1-211ENST00000476994 KDM5AP29375 1690 aaKnown RBP26.14■■□□□ 1.78
SREBF1-211ENST00000476994 DHX57Q6P158 1386 aaKnown RBP26.13■■□□□ 1.77
SREBF1-211ENST00000476994 TRIM52Q96A61 297 aa26.13■■□□□ 1.77
SREBF1-211ENST00000476994 STRCP1A6NGW2 1772 aa26.12■■□□□ 1.77
SREBF1-211ENST00000476994 ARHGAP23Q9P227 1491 aa26.11■■□□□ 1.77
SREBF1-211ENST00000476994 ILDR2Q71H61 639 aa26.1■■□□□ 1.77
SREBF1-211ENST00000476994 HSPA1LP34931 641 aa26.07■■□□□ 1.76
SREBF1-211ENST00000476994 MPHOSPH9Q99550 1183 aa26.07■■□□□ 1.76
SREBF1-211ENST00000476994 LRRC7Q96NW7 1537 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms