RNA–Protein interactions for RNA: ENST00000476994.1

SREBF1-211, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-211ENST00000476994 NISCHQ9Y2I1 1504 aa42.08■■■■■ 4.33
SREBF1-211ENST00000476994 CCDC180Q9P1Z9 1646 aa37.86■■■■□ 3.65
SREBF1-211ENST00000476994 ABCC9O60706 1549 aa37.69■■■■□ 3.62
SREBF1-211ENST00000476994 RB1CC1Q8TDY2 1594 aa36■■■■□ 3.35
SREBF1-211ENST00000476994 NACADO15069 1562 aa35.74■■■■□ 3.31
SREBF1-211ENST00000476994 DCAF8L2P0C7V8 631 aa35.57■■■■□ 3.28
SREBF1-211ENST00000476994 MYO15BQ96JP2 1530 aa35.22■■■■□ 3.23
SREBF1-211ENST00000476994 UNC13AQ9UPW8 1703 aa35.18■■■■□ 3.22
SREBF1-211ENST00000476994 DNAJC5BQ9UF47 199 aa35.15■■■■□ 3.22
SREBF1-211ENST00000476994 ZCCHC6Q5VYS8 1495 aaKnown RBP35.05■■■■□ 3.2
SREBF1-211ENST00000476994 PABPN1Q86U42 306 aaKnown RBP eCLIP35.05■■■■□ 3.2
SREBF1-211ENST00000476994 BICRAQ9NZM4 1560 aa34.8■■■■□ 3.16
SREBF1-211ENST00000476994 DCAF1Q9Y4B6 1507 aa34.79■■■■□ 3.16
SREBF1-211ENST00000476994 SHROOM4Q9ULL8 1493 aa34.47■■■■□ 3.11
SREBF1-211ENST00000476994 SCRIBQ14160 1630 aa34.43■■■■□ 3.1
SREBF1-211ENST00000476994 CC2D2AQ9P2K1 1620 aa34.08■■■■□ 3.05
SREBF1-211ENST00000476994 EIF4G1Q04637 1599 aaKnown RBP34.02■■■■□ 3.04
SREBF1-211ENST00000476994 CECR2Q9BXF3 1484 aa33.96■■■■□ 3.03
SREBF1-211ENST00000476994 NCAPD3P42695 1498 aa32.92■■■□□ 2.86
SREBF1-211ENST00000476994 SMARCA4P51532 1647 aa32.85■■■□□ 2.85
SREBF1-211ENST00000476994 SMARCA2P51531 1590 aa32.83■■■□□ 2.85
SREBF1-211ENST00000476994 ATAD2BQ9ULI0 1458 aa32.81■■■□□ 2.84
SREBF1-211ENST00000476994 HMGXB3Q12766 1538 aa32.73■■■□□ 2.83
SREBF1-211ENST00000476994 BAZ1AQ9NRL2 1556 aaPredicted RBP32.73■■■□□ 2.83
SREBF1-211ENST00000476994 ERCC6Q03468 1493 aa32.64■■■□□ 2.82
SREBF1-211ENST00000476994 BAZ1BQ9UIG0 1483 aaKnown RBP32.58■■■□□ 2.81
SREBF1-211ENST00000476994 CUX2O14529 1486 aa32.52■■■□□ 2.8
SREBF1-211ENST00000476994 PEG3Q9GZU2 1588 aa32.51■■■□□ 2.79
SREBF1-211ENST00000476994 MROH2BQ7Z745 1585 aa32.38■■■□□ 2.77
SREBF1-211ENST00000476994 DNAJC5Q9H3Z4 198 aa32.36■■■□□ 2.77
SREBF1-211ENST00000476994 NESP48681 1621 aa32.34■■■□□ 2.77
SREBF1-211ENST00000476994 LAMC3Q9Y6N6 1575 aa32.26■■■□□ 2.75
SREBF1-211ENST00000476994 RSF1Q96T23 1441 aaPredicted RBP32.13■■■□□ 2.73
SREBF1-211ENST00000476994 THOC2Q8NI27 1593 aaKnown RBP32.07■■■□□ 2.72
SREBF1-211ENST00000476994 PDS5BQ9NTI5 1447 aa32.06■■■□□ 2.72
SREBF1-211ENST00000476994 WIZO95785 1651 aa32.05■■■□□ 2.72
SREBF1-211ENST00000476994 KIF21AQ7Z4S6 1674 aa32.05■■■□□ 2.72
SREBF1-211ENST00000476994 CADPSQ9ULU8 1353 aa31.93■■■□□ 2.7
SREBF1-211ENST00000476994 MRC2Q9UBG0 1479 aa31.74■■■□□ 2.67
SREBF1-211ENST00000476994 TOP2AP11388 1531 aaKnown RBP31.68■■■□□ 2.66
SREBF1-211ENST00000476994 CEP164Q9UPV0 1460 aa31.66■■■□□ 2.66
SREBF1-211ENST00000476994 WDR62O43379 1518 aa31.65■■■□□ 2.66
SREBF1-211ENST00000476994 SUPT5HO00267 1087 aaKnown RBP31.65■■■□□ 2.66
SREBF1-211ENST00000476994 FANCD2Q9BXW9 1451 aa31.59■■■□□ 2.65
SREBF1-211ENST00000476994 CFTRP13569 1480 aa31.57■■■□□ 2.64
SREBF1-211ENST00000476994 PRDM2Q13029 1718 aa31.45■■■□□ 2.63
SREBF1-211ENST00000476994 URB2Q14146 1524 aaKnown RBP31.27■■■□□ 2.6
SREBF1-211ENST00000476994 CCDC88BA6NC98 1476 aa31.27■■■□□ 2.6
SREBF1-211ENST00000476994 OSCARQ8IYS5 282 aa31.04■■■□□ 2.56
SREBF1-211ENST00000476994 TRIM41Q8WV44 630 aa31.03■■■□□ 2.56
SREBF1-211ENST00000476994 ABCC8Q09428 1581 aa31.03■■■□□ 2.56
SREBF1-211ENST00000476994 IFT140Q96RY7 1462 aa31.01■■■□□ 2.55
SREBF1-211ENST00000476994 TOPBP1Q92547 1522 aa30.98■■■□□ 2.55
SREBF1-211ENST00000476994 DNMBPQ6XZF7 1577 aa30.92■■■□□ 2.54
SREBF1-211ENST00000476994 ZNF608Q9ULD9 1512 aaPredicted RBP30.87■■■□□ 2.53
SREBF1-211ENST00000476994 EIF4G3O43432 1585 aaKnown RBP30.79■■■□□ 2.52
SREBF1-211ENST00000476994 TARBP1Q13395 1621 aaKnown RBP30.7■■■□□ 2.51
SREBF1-211ENST00000476994 POLA1P09884 1462 aaPredicted RBP30.66■■■□□ 2.5
SREBF1-211ENST00000476994 RIMBP3CA6NJZ7 1639 aa30.62■■■□□ 2.49
SREBF1-211ENST00000476994 RIMBP3BA6NNM3 1639 aa30.62■■■□□ 2.49
SREBF1-211ENST00000476994 RIMBP3Q9UFD9 1639 aa30.62■■■□□ 2.49
SREBF1-211ENST00000476994 AQRO60306 1485 aaKnown RBP eCLIP30.61■■■□□ 2.498e-19■■□□□ 11.4
SREBF1-211ENST00000476994 CHD1O14646 1710 aa30.6■■■□□ 2.49
SREBF1-211ENST00000476994 SOGA1O94964 1423 aa30.55■■■□□ 2.48
SREBF1-211ENST00000476994 RAD54L2Q9Y4B4 1467 aa30.51■■■□□ 2.48
SREBF1-211ENST00000476994 ARHGEF11O15085 1522 aa30.51■■■□□ 2.47
SREBF1-211ENST00000476994 WDR97A6NE52 1622 aa30.51■■■□□ 2.47
SREBF1-211ENST00000476994 FBLN2P98095 1184 aa30.5■■■□□ 2.47
SREBF1-211ENST00000476994 FGD5Q6ZNL6 1462 aa30.49■■■□□ 2.47
SREBF1-211ENST00000476994 TDRD9Q8NDG6 1382 aaKnown RBP30.43■■■□□ 2.46
SREBF1-211ENST00000476994 CUX1P39880 1505 aa30.43■■■□□ 2.46
SREBF1-211ENST00000476994 SNAPC4Q5SXM2 1469 aa30.34■■■□□ 2.45
SREBF1-211ENST00000476994 MAGI1Q96QZ7 1491 aaPredicted RBP30.31■■■□□ 2.44
SREBF1-211ENST00000476994 GRIN2BQ13224 1484 aa30.3■■■□□ 2.44
SREBF1-211ENST00000476994 CYB5RLQ6IPT4 315 aa30.29■■■□□ 2.44
SREBF1-211ENST00000476994 CHMP7Q8WUX9 453 aaPredicted RBP30.28■■■□□ 2.44
SREBF1-211ENST00000476994 SYNJ1O43426 1573 aa30.25■■■□□ 2.43
SREBF1-211ENST00000476994 PBRM1Q86U86 1689 aa30.25■■■□□ 2.43
SREBF1-211ENST00000476994 WRNQ14191 1432 aaPredicted RBP eCLIP30.23■■■□□ 2.433e-9■■■■■ 32
SREBF1-211ENST00000476994 BIVM-ERCC5R4GMW8 1640 aa30.22■■■□□ 2.43
SREBF1-211ENST00000476994 SYNJ2O15056 1496 aa30.19■■■□□ 2.42
SREBF1-211ENST00000476994 GAPVD1Q14C86 1478 aa30.19■■■□□ 2.42
SREBF1-211ENST00000476994 TOP2BQ02880 1626 aa30.19■■■□□ 2.42
SREBF1-211ENST00000476994 ARAP1Q96P48 1450 aa30.17■■■□□ 2.42
SREBF1-211ENST00000476994 ABCA10Q8WWZ4 1543 aa30.16■■■□□ 2.42
SREBF1-211ENST00000476994 CLASP1Q7Z460 1538 aa30.15■■■□□ 2.42
SREBF1-211ENST00000476994 ABCA5Q8WWZ7 1642 aa30.12■■■□□ 2.41
SREBF1-211ENST00000476994 CHIC1Q5VXU3 224 aa30.04■■■□□ 2.4
SREBF1-211ENST00000476994 TRHP20396 242 aaPredicted RBP30.01■■■□□ 2.39
SREBF1-211ENST00000476994 GRIN2AQ12879 1464 aa29.89■■■□□ 2.38
SREBF1-211ENST00000476994 ADAMTS12P58397 1594 aa29.89■■■□□ 2.38
SREBF1-211ENST00000476994 ERICH3Q5RHP9 1530 aa29.81■■■□□ 2.36
SREBF1-211ENST00000476994 FHAD1B1AJZ9 1412 aa29.81■■■□□ 2.36
SREBF1-211ENST00000476994 NUP160Q12769 1436 aa29.75■■■□□ 2.35
SREBF1-211ENST00000476994 CEP170Q5SW79 1584 aa29.75■■■□□ 2.35
SREBF1-211ENST00000476994 SHROOM2Q13796 1616 aa29.65■■■□□ 2.34
SREBF1-211ENST00000476994 ERCC6L2Q5T890 1561 aa29.63■■■□□ 2.33
SREBF1-211ENST00000476994 RUSC2Q8N2Y8 1516 aa29.55■■■□□ 2.32
SREBF1-211ENST00000476994 KIF27Q86VH2 1401 aa29.51■■■□□ 2.31
SREBF1-211ENST00000476994 PRG4Q92954 1404 aaPredicted RBP29.49■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms