RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 KDM5DQ9BY66 1539 aa38.68■■■■□ 3.78
PTCH1-210ENST00000468211 NCKAP5LQ9HCH0 1330 aa38.66■■■■□ 3.78
PTCH1-210ENST00000468211 MIA2Q96PC5 1412 aa38.65■■■■□ 3.78
PTCH1-210ENST00000468211 LTBP4Q8N2S1 1624 aa38.65■■■■□ 3.78
PTCH1-210ENST00000468211 FBXO31Q5XUX0 539 aaPredicted RBP38.63■■■■□ 3.77
PTCH1-210ENST00000468211 FAM135AQ9P2D6 1515 aa38.63■■■■□ 3.77
PTCH1-210ENST00000468211 PLA2R1Q13018 1463 aa38.6■■■■□ 3.77
PTCH1-210ENST00000468211 PZPP20742 1482 aa38.6■■■■□ 3.77
PTCH1-210ENST00000468211 DNMT1P26358 1616 aaKnown RBP38.59■■■■□ 3.77
PTCH1-210ENST00000468211 WASHC2CQ9Y4E1 1318 aa38.59■■■■□ 3.77
PTCH1-210ENST00000468211 A2ML1A8K2U0 1454 aa38.58■■■■□ 3.77
PTCH1-210ENST00000468211 RNF17Q9BXT8 1623 aaKnown RBP38.57■■■■□ 3.77
PTCH1-210ENST00000468211 TCOF1Q13428 1488 aaKnown RBP38.57■■■■□ 3.76
PTCH1-210ENST00000468211 TNRQ92752 1358 aa38.55■■■■□ 3.76
PTCH1-210ENST00000468211 PKD2Q13563 968 aa38.51■■■■□ 3.76
PTCH1-210ENST00000468211 EIF2AK4Q9P2K8 1649 aaKnown RBP38.51■■■■□ 3.76
PTCH1-210ENST00000468211 PTPN23Q9H3S7 1636 aa38.49■■■■□ 3.75
PTCH1-210ENST00000468211 APLP2Q06481 763 aa38.49■■■■□ 3.75
PTCH1-210ENST00000468211 CROCC2H7BZ55 1655 aa38.49■■■■□ 3.75
PTCH1-210ENST00000468211 MROH1Q8NDA8 1641 aa38.49■■■■□ 3.75
PTCH1-210ENST00000468211 ABCC3O15438 1527 aa38.47■■■■□ 3.75
PTCH1-210ENST00000468211 ZNF335Q9H4Z2 1342 aaPredicted RBP38.45■■■■□ 3.75
PTCH1-210ENST00000468211 ZC3H13Q5T200 1668 aaKnown RBP38.44■■■■□ 3.74
PTCH1-210ENST00000468211 ABCC5O15440 1437 aa38.44■■■■□ 3.74
PTCH1-210ENST00000468211 POLR1AO95602 1720 aaPredicted RBP38.43■■■■□ 3.74
PTCH1-210ENST00000468211 CEP152O94986 1710 aa38.42■■■■□ 3.74
PTCH1-210ENST00000468211 DUOX2Q9NRD8 1548 aa38.42■■■■□ 3.74
PTCH1-210ENST00000468211 IQSEC2Q5JU85 1478 aa38.38■■■■□ 3.73
PTCH1-210ENST00000468211 SHANK2Q9UPX8 1470 aa38.38■■■■□ 3.73
PTCH1-210ENST00000468211 NEURL4Q96JN8 1562 aa38.38■■■■□ 3.73
PTCH1-210ENST00000468211 CFAP65Q6ZU64 1925 aaKnown RBP38.38■■■■□ 3.73
PTCH1-210ENST00000468211 FGD6Q6ZV73 1430 aa38.38■■■■□ 3.73
PTCH1-210ENST00000468211 NLRP1Q9C000 1473 aa38.35■■■■□ 3.73
PTCH1-210ENST00000468211 KIF15Q9NS87 1388 aa38.35■■■■□ 3.73
PTCH1-210ENST00000468211 DAPK1P53355 1430 aa38.35■■■■□ 3.73
PTCH1-210ENST00000468211 SPATA31D1Q6ZQQ2 1576 aa38.34■■■■□ 3.73
PTCH1-210ENST00000468211 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.32■■■■□ 3.73
PTCH1-210ENST00000468211 RRP7BPQ9NSQ0 103 aa38.32■■■■□ 3.72
PTCH1-210ENST00000468211 UGGT1Q9NYU2 1555 aa38.31■■■■□ 3.72
PTCH1-210ENST00000468211 ERVK-7P63135 1459 aa38.29■■■■□ 3.72
PTCH1-210ENST00000468211 PRDM15P57071 1507 aaPredicted RBP38.27■■■■□ 3.72
PTCH1-210ENST00000468211 THEMISQ8N1K5 641 aaPredicted RBP38.26■■■■□ 3.72
PTCH1-210ENST00000468211 ERBINQ96RT1 1412 aa38.26■■■■□ 3.72
PTCH1-210ENST00000468211 ANKLE2Q86XL3 938 aa38.22■■■■□ 3.71
PTCH1-210ENST00000468211 DEPDC5O75140 1603 aa38.22■■■■□ 3.71
PTCH1-210ENST00000468211 CHIC2Q9UKJ5 165 aa38.21■■■■□ 3.71
PTCH1-210ENST00000468211 MED14O60244 1454 aa38.15■■■■□ 3.7
PTCH1-210ENST00000468211 UBR1Q8IWV7 1749 aa38.15■■■■□ 3.7
PTCH1-210ENST00000468211 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.15■■■■□ 3.7
PTCH1-210ENST00000468211 ANKRD30AQ9BXX3 1397 aa38.14■■■■□ 3.7
PTCH1-210ENST00000468211 NPHP4O75161 1426 aaPredicted RBP38.13■■■■□ 3.7
PTCH1-210ENST00000468211 ARHGAP31Q2M1Z3 1444 aa38.13■■■■□ 3.7
PTCH1-210ENST00000468211 VWDEQ8N2E2 1590 aa38.13■■■■□ 3.69
PTCH1-210ENST00000468211 UBAP1LF5GYI3 381 aa38.12■■■■□ 3.69
PTCH1-210ENST00000468211 IQGAP1P46940 1657 aa38.11■■■■□ 3.69
PTCH1-210ENST00000468211 CPS1P31327 1500 aa38.07■■■■□ 3.68
PTCH1-210ENST00000468211 ADGRL2O95490 1459 aa38.05■■■■□ 3.68
PTCH1-210ENST00000468211 FAM50AQ14320 339 aaKnown RBP38.05■■■■□ 3.68
PTCH1-210ENST00000468211 KANK1Q14678 1352 aa38.03■■■■□ 3.68
PTCH1-210ENST00000468211 STRCP1A6NGW2 1772 aa38.02■■■■□ 3.68
PTCH1-210ENST00000468211 LMTK2Q8IWU2 1503 aa38.02■■■■□ 3.68
PTCH1-210ENST00000468211 PIK3C2BO00750 1634 aa38■■■■□ 3.67
PTCH1-210ENST00000468211 ARHGAP23Q9P227 1491 aa37.96■■■■□ 3.67
PTCH1-210ENST00000468211 DISP3Q9P2K9 1392 aa37.96■■■■□ 3.67
PTCH1-210ENST00000468211 SLIT1O75093 1534 aa37.95■■■■□ 3.67
PTCH1-210ENST00000468211 LTKP29376 864 aa37.94■■■■□ 3.66
PTCH1-210ENST00000468211 SCAF11Q99590 1463 aaKnown RBP37.94■■■■□ 3.66
PTCH1-210ENST00000468211 SYNMO15061 1565 aa37.92■■■■□ 3.66
PTCH1-210ENST00000468211 EFCAB6Q5THR3 1501 aa37.92■■■■□ 3.66
PTCH1-210ENST00000468211 ANKRD50Q9ULJ7 1429 aa37.89■■■■□ 3.66
PTCH1-210ENST00000468211 TXNDC2Q86VQ3 553 aa37.88■■■■□ 3.65
PTCH1-210ENST00000468211 IDI1Q13907 227 aa37.85■■■■□ 3.65
PTCH1-210ENST00000468211 ALKQ9UM73 1620 aa37.85■■■■□ 3.65
PTCH1-210ENST00000468211 NOS1P29475 1434 aa37.85■■■■□ 3.65
PTCH1-210ENST00000468211 KDM5AP29375 1690 aaKnown RBP37.85■■■■□ 3.65
PTCH1-210ENST00000468211 LRRC7Q96NW7 1537 aa37.83■■■■□ 3.65
PTCH1-210ENST00000468211 PIP4K2BP78356 416 aa37.83■■■■□ 3.65
PTCH1-210ENST00000468211 TMEM2Q9UHN6 1383 aa37.82■■■■□ 3.65
PTCH1-210ENST00000468211 ILDR2Q71H61 639 aa37.82■■■■□ 3.64
PTCH1-210ENST00000468211 SCAF1Q9H7N4 1312 aaKnown RBP37.82■■■■□ 3.64
PTCH1-210ENST00000468211 TOM1O60784 492 aa37.81■■■■□ 3.64
PTCH1-210ENST00000468211 STAG3Q9UJ98 1225 aa37.79■■■■□ 3.64
PTCH1-210ENST00000468211 PPARGC1BQ86YN6 1023 aaKnown RBP37.77■■■■□ 3.64
PTCH1-210ENST00000468211 EID1Q9Y6B2 187 aa37.77■■■■□ 3.64
PTCH1-210ENST00000468211 TET3O43151 1660 aa37.76■■■■□ 3.64
PTCH1-210ENST00000468211 HSPA1LP34931 641 aa37.75■■■■□ 3.63
PTCH1-210ENST00000468211 UNC13BO14795 1591 aa37.75■■■■□ 3.63
PTCH1-210ENST00000468211 ADGRB3O60242 1522 aa37.73■■■■□ 3.63
PTCH1-210ENST00000468211 XIRP1Q702N8 1843 aaKnown RBP37.72■■■■□ 3.63
PTCH1-210ENST00000468211 GCC2Q8IWJ2 1684 aa37.72■■■■□ 3.63
PTCH1-210ENST00000468211 RPRD2Q5VT52 1461 aaKnown RBP37.71■■■■□ 3.63
PTCH1-210ENST00000468211 MYO5BQ9ULV0 1848 aa37.71■■■■□ 3.63
PTCH1-210ENST00000468211 ROCK1Q13464 1354 aa37.68■■■■□ 3.62
PTCH1-210ENST00000468211 SLC52A1Q9NWF4 448 aa37.66■■■■□ 3.62
PTCH1-210ENST00000468211 E9PCH4 1651 aa37.64■■■■□ 3.62
PTCH1-210ENST00000468211 ITGAEP38570 1179 aa37.63■■■■□ 3.61
PTCH1-210ENST00000468211 IQGAP3Q86VI3 1631 aa37.6■■■■□ 3.61
PTCH1-210ENST00000468211 SLC26A8Q96RN1 970 aa37.58■■■■□ 3.61
PTCH1-210ENST00000468211 TMEM131LA2VDJ0 1609 aa37.58■■■■□ 3.61
PTCH1-210ENST00000468211 ZFYVE9O95405 1425 aa37.54■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms