RNA–Protein interactions for RNA: ENST00000462553.2

CDC42BPA-210, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 430 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-210ENST00000462553 RTEL1-TNFRSF6BF6WH68 1400 aa12.81□□□□□ -0.36
CDC42BPA-210ENST00000462553 CAMSAP2Q08AD1 1489 aa12.81□□□□□ -0.36
CDC42BPA-210ENST00000462553 FAM135AQ9P2D6 1515 aa12.8□□□□□ -0.36
CDC42BPA-210ENST00000462553 HOXD11P31277 338 aaPredicted RBP12.8□□□□□ -0.36
CDC42BPA-210ENST00000462553 NEURL4Q96JN8 1562 aa12.8□□□□□ -0.36
CDC42BPA-210ENST00000462553 NCOA2Q15596 1464 aa12.79□□□□□ -0.36
CDC42BPA-210ENST00000462553 CCDC141Q6ZP82 1450 aa12.79□□□□□ -0.36
CDC42BPA-210ENST00000462553 ARHGEF5Q12774 1597 aa12.79□□□□□ -0.36
CDC42BPA-210ENST00000462553 PPP4R3CPQ6ZMV5 832 aa12.79□□□□□ -0.36
CDC42BPA-210ENST00000462553 A2ML1A8K2U0 1454 aa12.78□□□□□ -0.36
CDC42BPA-210ENST00000462553 KDM5DQ9BY66 1539 aa12.78□□□□□ -0.36
CDC42BPA-210ENST00000462553 RNF39Q9H2S5 420 aa12.78□□□□□ -0.36
CDC42BPA-210ENST00000462553 NCKAP5LQ9HCH0 1330 aa12.77□□□□□ -0.37
CDC42BPA-210ENST00000462553 DHX29Q7Z478 1369 aaKnown RBP12.77□□□□□ -0.37
CDC42BPA-210ENST00000462553 RNF17Q9BXT8 1623 aaKnown RBP12.77□□□□□ -0.37
CDC42BPA-210ENST00000462553 GGT6Q6P531 493 aa12.76□□□□□ -0.37
CDC42BPA-210ENST00000462553 ZNF335Q9H4Z2 1342 aaPredicted RBP12.76□□□□□ -0.37
CDC42BPA-210ENST00000462553 PZPP20742 1482 aa12.76□□□□□ -0.37
CDC42BPA-210ENST00000462553 DISP3Q9P2K9 1392 aa12.75□□□□□ -0.37
CDC42BPA-210ENST00000462553 ZC3H13Q5T200 1668 aaKnown RBP12.74□□□□□ -0.37
CDC42BPA-210ENST00000462553 MAST1Q9Y2H9 1570 aa12.74□□□□□ -0.37
CDC42BPA-210ENST00000462553 ILDR2Q71H61 639 aa12.74□□□□□ -0.37
CDC42BPA-210ENST00000462553 MROH1Q8NDA8 1641 aa12.73□□□□□ -0.37
CDC42BPA-210ENST00000462553 PKD2Q13563 968 aa12.73□□□□□ -0.37
CDC42BPA-210ENST00000462553 EIF2AK4Q9P2K8 1649 aaKnown RBP12.73□□□□□ -0.37
CDC42BPA-210ENST00000462553 CEP152O94986 1710 aa12.72□□□□□ -0.37
CDC42BPA-210ENST00000462553 LOC105371045A0A1W2PR82 267 aa12.72□□□□□ -0.37
CDC42BPA-210ENST00000462553 DEPDC5O75140 1603 aa12.71□□□□□ -0.37
CDC42BPA-210ENST00000462553 VWDEQ8N2E2 1590 aa12.71□□□□□ -0.37
CDC42BPA-210ENST00000462553 LRRC9Q6ZRR7 1453 aa12.71□□□□□ -0.38
CDC42BPA-210ENST00000462553 TNRQ92752 1358 aa12.7□□□□□ -0.38
CDC42BPA-210ENST00000462553 ABCC3O15438 1527 aa12.7□□□□□ -0.38
CDC42BPA-210ENST00000462553 STRCP1A6NGW2 1772 aa12.7□□□□□ -0.38
CDC42BPA-210ENST00000462553 CFAP65Q6ZU64 1925 aaKnown RBP12.7□□□□□ -0.38
CDC42BPA-210ENST00000462553 CROCC2H7BZ55 1655 aa12.7□□□□□ -0.38
CDC42BPA-210ENST00000462553 VPS8Q8N3P4 1428 aa12.7□□□□□ -0.38
CDC42BPA-210ENST00000462553 IQGAP1P46940 1657 aa12.69□□□□□ -0.38
CDC42BPA-210ENST00000462553 ALKQ9UM73 1620 aa12.69□□□□□ -0.38
CDC42BPA-210ENST00000462553 NLRP1Q9C000 1473 aa12.68□□□□□ -0.38
CDC42BPA-210ENST00000462553 KIF3BO15066 747 aa12.68□□□□□ -0.38
CDC42BPA-210ENST00000462553 FBXO31Q5XUX0 539 aaPredicted RBP12.68□□□□□ -0.38
CDC42BPA-210ENST00000462553 CNKSR2Q8WXI2 1034 aa12.68□□□□□ -0.38
CDC42BPA-210ENST00000462553 UGGT1Q9NYU2 1555 aa12.68□□□□□ -0.38
CDC42BPA-210ENST00000462553 CPS1P31327 1500 aa12.67□□□□□ -0.38
CDC42BPA-210ENST00000462553 UBR1Q8IWV7 1749 aa12.67□□□□□ -0.38
CDC42BPA-210ENST00000462553 MAP3K1Q13233 1512 aa12.67□□□□□ -0.38
CDC42BPA-210ENST00000462553 MED14O60244 1454 aa12.66□□□□□ -0.38
CDC42BPA-210ENST00000462553 MIA2Q96PC5 1412 aa12.66□□□□□ -0.38
CDC42BPA-210ENST00000462553 SHANK2Q9UPX8 1470 aa12.65□□□□□ -0.38
CDC42BPA-210ENST00000462553 UBAP1LF5GYI3 381 aa12.65□□□□□ -0.38
CDC42BPA-210ENST00000462553 ERVK-7P63135 1459 aa12.65□□□□□ -0.38
CDC42BPA-210ENST00000462553 PRDM15P57071 1507 aaPredicted RBP12.64□□□□□ -0.39
CDC42BPA-210ENST00000462553 SOCS7O14512 581 aa12.64□□□□□ -0.39
CDC42BPA-210ENST00000462553 C1QBPQ07021 282 aaKnown RBP12.64□□□□□ -0.39
CDC42BPA-210ENST00000462553 RSPH4AQ5TD94 716 aa12.64□□□□□ -0.39
CDC42BPA-210ENST00000462553 RNF216Q9NWF9 866 aaPredicted RBP12.64□□□□□ -0.39
CDC42BPA-210ENST00000462553 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.64□□□□□ -0.39
CDC42BPA-210ENST00000462553 WASHC2CQ9Y4E1 1318 aa12.63□□□□□ -0.39
CDC42BPA-210ENST00000462553 MYOM3Q5VTT5 1437 aa12.63□□□□□ -0.39
CDC42BPA-210ENST00000462553 SYNMO15061 1565 aa12.63□□□□□ -0.39
CDC42BPA-210ENST00000462553 MED1Q15648 1581 aaPredicted RBP12.62□□□□□ -0.39
CDC42BPA-210ENST00000462553 XIRP1Q702N8 1843 aaKnown RBP12.62□□□□□ -0.39
CDC42BPA-210ENST00000462553 NPHP4O75161 1426 aaPredicted RBP12.62□□□□□ -0.39
CDC42BPA-210ENST00000462553 DUOX2Q9NRD8 1548 aa12.61□□□□□ -0.39
CDC42BPA-210ENST00000462553 PTPN23Q9H3S7 1636 aa12.6□□□□□ -0.39
CDC42BPA-210ENST00000462553 KANK4Q5T7N3 995 aaPredicted RBP12.6□□□□□ -0.39
CDC42BPA-210ENST00000462553 TSPY4P0CV99 314 aa12.58□□□□□ -0.4
CDC42BPA-210ENST00000462553 TSPY10P0CW01 314 aa12.58□□□□□ -0.4
CDC42BPA-210ENST00000462553 PIK3C2BO00750 1634 aa12.58□□□□□ -0.4
CDC42BPA-210ENST00000462553 SLIT1O75093 1534 aa12.57□□□□□ -0.4
CDC42BPA-210ENST00000462553 LRRC7Q96NW7 1537 aa12.57□□□□□ -0.4
CDC42BPA-210ENST00000462553 ANKLE2Q86XL3 938 aa12.57□□□□□ -0.4
CDC42BPA-210ENST00000462553 ARHGAP23Q9P227 1491 aa12.57□□□□□ -0.4
CDC42BPA-210ENST00000462553 HSPA1LP34931 641 aa12.56□□□□□ -0.4
CDC42BPA-210ENST00000462553 THEMISQ8N1K5 641 aaPredicted RBP12.56□□□□□ -0.4
CDC42BPA-210ENST00000462553 KDM5AP29375 1690 aaKnown RBP12.56□□□□□ -0.4
CDC42BPA-210ENST00000462553 ABCC5O15440 1437 aa12.55□□□□□ -0.4
CDC42BPA-210ENST00000462553 ARHGAP31Q2M1Z3 1444 aa12.55□□□□□ -0.4
CDC42BPA-210ENST00000462553 ERBINQ96RT1 1412 aa12.55□□□□□ -0.4
CDC42BPA-210ENST00000462553 SCAF11Q99590 1463 aaKnown RBP12.55□□□□□ -0.4
CDC42BPA-210ENST00000462553 KIF15Q9NS87 1388 aa12.55□□□□□ -0.4
CDC42BPA-210ENST00000462553 PIP4K2BP78356 416 aa12.53□□□□□ -0.4
CDC42BPA-210ENST00000462553 DAPK1P53355 1430 aa12.53□□□□□ -0.4
CDC42BPA-210ENST00000462553 LMTK2Q8IWU2 1503 aa12.52□□□□□ -0.4
CDC42BPA-210ENST00000462553 TOM1O60784 492 aa12.52□□□□□ -0.41
CDC42BPA-210ENST00000462553 MYO5BQ9ULV0 1848 aa12.51□□□□□ -0.41
CDC42BPA-210ENST00000462553 FGD6Q6ZV73 1430 aa12.51□□□□□ -0.41
CDC42BPA-210ENST00000462553 EFCAB6Q5THR3 1501 aa12.5□□□□□ -0.41
CDC42BPA-210ENST00000462553 LTKP29376 864 aa12.48□□□□□ -0.41
CDC42BPA-210ENST00000462553 ADGRB3O60242 1522 aa12.47□□□□□ -0.41
CDC42BPA-210ENST00000462553 TET3O43151 1660 aa12.47□□□□□ -0.41
CDC42BPA-210ENST00000462553 NWD1Q149M9 1564 aa12.47□□□□□ -0.41
CDC42BPA-210ENST00000462553 ADGRL2O95490 1459 aa12.46□□□□□ -0.41
CDC42BPA-210ENST00000462553 RRP7BPQ9NSQ0 103 aa12.46□□□□□ -0.41
CDC42BPA-210ENST00000462553 NOS1P29475 1434 aa12.45□□□□□ -0.42
CDC42BPA-210ENST00000462553 TMEM2Q9UHN6 1383 aa12.45□□□□□ -0.42
CDC42BPA-210ENST00000462553 GCC2Q8IWJ2 1684 aa12.45□□□□□ -0.42
CDC42BPA-210ENST00000462553 ANKRD30AQ9BXX3 1397 aa12.43□□□□□ -0.42
CDC42BPA-210ENST00000462553 ROBO1Q9Y6N7 1651 aa12.42□□□□□ -0.42
CDC42BPA-210ENST00000462553 TXNDC2Q86VQ3 553 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms