RNA–Protein interactions for RNA: ENST00000462553.2

CDC42BPA-210, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 430 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-210ENST00000462553 NISCHQ9Y2I1 1504 aa20.22■□□□□ 0.83
CDC42BPA-210ENST00000462553 AEBP2Q6ZN18 517 aaPredicted RBP19.76■□□□□ 0.75
CDC42BPA-210ENST00000462553 CHIC1Q5VXU3 224 aa18.66■□□□□ 0.58
CDC42BPA-210ENST00000462553 CCDC180Q9P1Z9 1646 aa18.27■□□□□ 0.51
CDC42BPA-210ENST00000462553 ABCC9O60706 1549 aa18.23■□□□□ 0.51
CDC42BPA-210ENST00000462553 RB1CC1Q8TDY2 1594 aa17.35■□□□□ 0.37
CDC42BPA-210ENST00000462553 NACADO15069 1562 aa17.2■□□□□ 0.34
CDC42BPA-210ENST00000462553 DNAJC5BQ9UF47 199 aa17.15■□□□□ 0.34
CDC42BPA-210ENST00000462553 UNC13AQ9UPW8 1703 aa17.12■□□□□ 0.33
CDC42BPA-210ENST00000462553 SENP3Q9H4L4 574 aaPredicted RBP17.08■□□□□ 0.32
CDC42BPA-210ENST00000462553 MYO15BQ96JP2 1530 aa16.96■□□□□ 0.31
CDC42BPA-210ENST00000462553 BICRAQ9NZM4 1560 aa16.92■□□□□ 0.3
CDC42BPA-210ENST00000462553 DCAF8L2P0C7V8 631 aa16.88■□□□□ 0.29
CDC42BPA-210ENST00000462553 PABPN1Q86U42 306 aaKnown RBP eCLIP16.88■□□□□ 0.29
CDC42BPA-210ENST00000462553 ZCCHC6Q5VYS8 1495 aaKnown RBP16.77■□□□□ 0.28
CDC42BPA-210ENST00000462553 PHF23Q9BUL5 403 aaPredicted RBP16.74■□□□□ 0.27
CDC42BPA-210ENST00000462553 DCAF1Q9Y4B6 1507 aa16.72■□□□□ 0.27
CDC42BPA-210ENST00000462553 SHROOM4Q9ULL8 1493 aa16.63■□□□□ 0.25
CDC42BPA-210ENST00000462553 SCRIBQ14160 1630 aa16.59■□□□□ 0.25
CDC42BPA-210ENST00000462553 CC2D2AQ9P2K1 1620 aa16.53■□□□□ 0.24
CDC42BPA-210ENST00000462553 EIF4G1Q04637 1599 aaKnown RBP16.47■□□□□ 0.23
CDC42BPA-210ENST00000462553 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
CDC42BPA-210ENST00000462553 NCAPD3P42695 1498 aa15.86■□□□□ 0.13
CDC42BPA-210ENST00000462553 FOXD1Q16676 465 aa15.86■□□□□ 0.13
CDC42BPA-210ENST00000462553 SMARCA4P51532 1647 aa15.83■□□□□ 0.13
CDC42BPA-210ENST00000462553 ATAD2BQ9ULI0 1458 aa15.81■□□□□ 0.12
CDC42BPA-210ENST00000462553 HMGXB3Q12766 1538 aa15.79■□□□□ 0.12
CDC42BPA-210ENST00000462553 SMARCA2P51531 1590 aa15.77■□□□□ 0.11
CDC42BPA-210ENST00000462553 DNAJC5Q9H3Z4 198 aa15.76■□□□□ 0.11
CDC42BPA-210ENST00000462553 CUX2O14529 1486 aa15.76■□□□□ 0.11
CDC42BPA-210ENST00000462553 ERCC6Q03468 1493 aa15.71■□□□□ 0.1
CDC42BPA-210ENST00000462553 PEG3Q9GZU2 1588 aa15.7■□□□□ 0.1
CDC42BPA-210ENST00000462553 BAZ1AQ9NRL2 1556 aaPredicted RBP15.7■□□□□ 0.1
CDC42BPA-210ENST00000462553 NESP48681 1621 aa15.67■□□□□ 0.1
CDC42BPA-210ENST00000462553 BAZ1BQ9UIG0 1483 aaKnown RBP15.64■□□□□ 0.09
CDC42BPA-210ENST00000462553 THOC2Q8NI27 1593 aaKnown RBP15.62■□□□□ 0.09
CDC42BPA-210ENST00000462553 MROH2BQ7Z745 1585 aa15.58■□□□□ 0.09
CDC42BPA-210ENST00000462553 LAMC3Q9Y6N6 1575 aa15.56■□□□□ 0.08
CDC42BPA-210ENST00000462553 KIF21AQ7Z4S6 1674 aa15.55■□□□□ 0.08
CDC42BPA-210ENST00000462553 WIZO95785 1651 aa15.43■□□□□ 0.06
CDC42BPA-210ENST00000462553 PDS5BQ9NTI5 1447 aa15.38■□□□□ 0.05
CDC42BPA-210ENST00000462553 CADPSQ9ULU8 1353 aa15.34■□□□□ 0.05
CDC42BPA-210ENST00000462553 WDR62O43379 1518 aa15.33■□□□□ 0.05
CDC42BPA-210ENST00000462553 MRC2Q9UBG0 1479 aa15.32■□□□□ 0.04
CDC42BPA-210ENST00000462553 POTEDQ86YR6 584 aa15.27■□□□□ 0.04
CDC42BPA-210ENST00000462553 CEP164Q9UPV0 1460 aa15.22■□□□□ 0.03
CDC42BPA-210ENST00000462553 TOP2AP11388 1531 aaKnown RBP15.21■□□□□ 0.03
CDC42BPA-210ENST00000462553 PRDM2Q13029 1718 aa15.2■□□□□ 0.02
CDC42BPA-210ENST00000462553 FANCD2Q9BXW9 1451 aa15.2■□□□□ 0.02
CDC42BPA-210ENST00000462553 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
CDC42BPA-210ENST00000462553 CFTRP13569 1480 aa15.19■□□□□ 0.02
CDC42BPA-210ENST00000462553 MSH5O43196 834 aa15.12■□□□□ 0.01
CDC42BPA-210ENST00000462553 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
CDC42BPA-210ENST00000462553 TRIM41Q8WV44 630 aa15□□□□□ -0.01
CDC42BPA-210ENST00000462553 CCDC88BA6NC98 1476 aa14.99□□□□□ -0.01
CDC42BPA-210ENST00000462553 ZNF608Q9ULD9 1512 aaPredicted RBP14.93□□□□□ -0.02
CDC42BPA-210ENST00000462553 TOPBP1Q92547 1522 aa14.92□□□□□ -0.02
CDC42BPA-210ENST00000462553 IFT140Q96RY7 1462 aa14.91□□□□□ -0.02
CDC42BPA-210ENST00000462553 EIF4G3O43432 1585 aaKnown RBP14.9□□□□□ -0.02
CDC42BPA-210ENST00000462553 RIMBP3CA6NJZ7 1639 aa14.89□□□□□ -0.03
CDC42BPA-210ENST00000462553 RIMBP3BA6NNM3 1639 aa14.89□□□□□ -0.03
CDC42BPA-210ENST00000462553 RIMBP3Q9UFD9 1639 aa14.89□□□□□ -0.03
CDC42BPA-210ENST00000462553 OSCARQ8IYS5 282 aa14.89□□□□□ -0.03
CDC42BPA-210ENST00000462553 DNMBPQ6XZF7 1577 aa14.89□□□□□ -0.03
CDC42BPA-210ENST00000462553 TARBP1Q13395 1621 aaKnown RBP14.86□□□□□ -0.03
CDC42BPA-210ENST00000462553 CHD1O14646 1710 aa14.84□□□□□ -0.03
CDC42BPA-210ENST00000462553 ABCC8Q09428 1581 aa14.83□□□□□ -0.04
CDC42BPA-210ENST00000462553 ARHGEF11O15085 1522 aa14.81□□□□□ -0.04
CDC42BPA-210ENST00000462553 PIAS4Q8N2W9 510 aaPredicted RBP14.8□□□□□ -0.04
CDC42BPA-210ENST00000462553 POLA1P09884 1462 aaPredicted RBP14.76□□□□□ -0.05
CDC42BPA-210ENST00000462553 AQRO60306 1485 aaKnown RBP eCLIP14.74□□□□□ -0.05
CDC42BPA-210ENST00000462553 RAD54L2Q9Y4B4 1467 aa14.69□□□□□ -0.06
CDC42BPA-210ENST00000462553 PLPPR3Q6T4P5 718 aa14.69□□□□□ -0.06
CDC42BPA-210ENST00000462553 WDR97A6NE52 1622 aa14.69□□□□□ -0.06
CDC42BPA-210ENST00000462553 CUX1P39880 1505 aa14.66□□□□□ -0.06
CDC42BPA-210ENST00000462553 FGD5Q6ZNL6 1462 aa14.66□□□□□ -0.06
CDC42BPA-210ENST00000462553 ARAP1Q96P48 1450 aa14.66□□□□□ -0.06
CDC42BPA-210ENST00000462553 CLASP1Q7Z460 1538 aa14.63□□□□□ -0.07
CDC42BPA-210ENST00000462553 SNAPC4Q5SXM2 1469 aa14.63□□□□□ -0.07
CDC42BPA-210ENST00000462553 SOGA1O94964 1423 aa14.62□□□□□ -0.07
CDC42BPA-210ENST00000462553 PBRM1Q86U86 1689 aa14.61□□□□□ -0.07
CDC42BPA-210ENST00000462553 TDRD9Q8NDG6 1382 aaKnown RBP14.6□□□□□ -0.07
CDC42BPA-210ENST00000462553 MAGI1Q96QZ7 1491 aaPredicted RBP14.57□□□□□ -0.08
CDC42BPA-210ENST00000462553 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
CDC42BPA-210ENST00000462553 CYB5RLQ6IPT4 315 aa14.55□□□□□ -0.08
CDC42BPA-210ENST00000462553 ABCA5Q8WWZ7 1642 aa14.55□□□□□ -0.08
CDC42BPA-210ENST00000462553 FBLN2P98095 1184 aa14.54□□□□□ -0.08
CDC42BPA-210ENST00000462553 GRIN2BQ13224 1484 aa14.54□□□□□ -0.08
CDC42BPA-210ENST00000462553 SYNJ2O15056 1496 aa14.52□□□□□ -0.08
CDC42BPA-210ENST00000462553 PPP6R1Q9UPN7 881 aa14.49□□□□□ -0.09
CDC42BPA-210ENST00000462553 ABCA10Q8WWZ4 1543 aa14.49□□□□□ -0.09
CDC42BPA-210ENST00000462553 GAPVD1Q14C86 1478 aa14.48□□□□□ -0.09
CDC42BPA-210ENST00000462553 ADRA2BP18089 450 aa14.46□□□□□ -0.09
CDC42BPA-210ENST00000462553 BIVM-ERCC5R4GMW8 1640 aa14.45□□□□□ -0.1
CDC42BPA-210ENST00000462553 ADAMTS12P58397 1594 aa14.43□□□□□ -0.1
CDC42BPA-210ENST00000462553 CHMP7Q8WUX9 453 aaPredicted RBP14.43□□□□□ -0.1
CDC42BPA-210ENST00000462553 TOP2BQ02880 1626 aa14.41□□□□□ -0.1
CDC42BPA-210ENST00000462553 ERCC6L2Q5T890 1561 aa14.39□□□□□ -0.11
CDC42BPA-210ENST00000462553 TRHP20396 242 aaPredicted RBP14.39□□□□□ -0.11
CDC42BPA-210ENST00000462553 CEP170Q5SW79 1584 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms