RNA–Protein interactions for RNA: ENST00000460211.5

ATG4B-213, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 871 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-213ENST00000460211 SOCS7O14512 581 aa23.06■■□□□ 1.28
ATG4B-213ENST00000460211 FGD6Q6ZV73 1430 aa23.06■■□□□ 1.28
ATG4B-213ENST00000460211 ZNF335Q9H4Z2 1342 aaPredicted RBP23.06■■□□□ 1.28
ATG4B-213ENST00000460211 DHX29Q7Z478 1369 aaKnown RBP23.05■■□□□ 1.28
ATG4B-213ENST00000460211 ZNF142P52746 1687 aaPredicted RBP23.04■■□□□ 1.28
ATG4B-213ENST00000460211 CEP170BQ9Y4F5 1589 aaPredicted RBP23.03■■□□□ 1.28
ATG4B-213ENST00000460211 PTPRKQ15262 1439 aa23.02■■□□□ 1.28
ATG4B-213ENST00000460211 PTPN23Q9H3S7 1636 aa23.02■■□□□ 1.28
ATG4B-213ENST00000460211 ADGBQ8N7X0 1667 aa23.01■■□□□ 1.27
ATG4B-213ENST00000460211 PPP6R1Q9UPN7 881 aa23.01■■□□□ 1.27
ATG4B-213ENST00000460211 UBAP1LF5GYI3 381 aa22.99■■□□□ 1.27
ATG4B-213ENST00000460211 FAM50AQ14320 339 aaKnown RBP22.99■■□□□ 1.27
ATG4B-213ENST00000460211 TCOF1Q13428 1488 aaKnown RBP22.98■■□□□ 1.27
ATG4B-213ENST00000460211 KIF3BO15066 747 aa22.98■■□□□ 1.27
ATG4B-213ENST00000460211 PKD2Q13563 968 aa22.98■■□□□ 1.27
ATG4B-213ENST00000460211 PLA2R1Q13018 1463 aa22.98■■□□□ 1.27
ATG4B-213ENST00000460211 PPARGC1BQ86YN6 1023 aaKnown RBP22.96■■□□□ 1.27
ATG4B-213ENST00000460211 ABCC5O15440 1437 aa22.96■■□□□ 1.27
ATG4B-213ENST00000460211 MAST1Q9Y2H9 1570 aa22.96■■□□□ 1.27
ATG4B-213ENST00000460211 DAPK1P53355 1430 aa22.93■■□□□ 1.26
ATG4B-213ENST00000460211 SHANK2Q9UPX8 1470 aa22.92■■□□□ 1.26
ATG4B-213ENST00000460211 DNMT1P26358 1616 aaKnown RBP22.91■■□□□ 1.26
ATG4B-213ENST00000460211 RRP7BPQ9NSQ0 103 aa22.9■■□□□ 1.26
ATG4B-213ENST00000460211 A2ML1A8K2U0 1454 aa22.9■■□□□ 1.26
ATG4B-213ENST00000460211 ANKRD30AQ9BXX3 1397 aa22.89■■□□□ 1.26
ATG4B-213ENST00000460211 CHIC2Q9UKJ5 165 aa22.89■■□□□ 1.25
ATG4B-213ENST00000460211 KIF15Q9NS87 1388 aa22.89■■□□□ 1.25
ATG4B-213ENST00000460211 WASHC2CQ9Y4E1 1318 aa22.87■■□□□ 1.25
ATG4B-213ENST00000460211 FBXO31Q5XUX0 539 aaPredicted RBP22.87■■□□□ 1.25
ATG4B-213ENST00000460211 POLR1AO95602 1720 aaPredicted RBP22.85■■□□□ 1.25
ATG4B-213ENST00000460211 SCAF1Q9H7N4 1312 aaKnown RBP22.85■■□□□ 1.25
ATG4B-213ENST00000460211 DUOX2Q9NRD8 1548 aa22.85■■□□□ 1.25
ATG4B-213ENST00000460211 TNRQ92752 1358 aa22.84■■□□□ 1.25
ATG4B-213ENST00000460211 CROCC2H7BZ55 1655 aa22.82■■□□□ 1.24
ATG4B-213ENST00000460211 KDM5DQ9BY66 1539 aa22.82■■□□□ 1.24
ATG4B-213ENST00000460211 NEURL4Q96JN8 1562 aa22.81■■□□□ 1.24
ATG4B-213ENST00000460211 PIP4K2BP78356 416 aa22.81■■□□□ 1.24
ATG4B-213ENST00000460211 FAM135AQ9P2D6 1515 aa22.8■■□□□ 1.24
ATG4B-213ENST00000460211 ERBINQ96RT1 1412 aa22.8■■□□□ 1.24
ATG4B-213ENST00000460211 PZPP20742 1482 aa22.79■■□□□ 1.24
ATG4B-213ENST00000460211 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.79■■□□□ 1.24
ATG4B-213ENST00000460211 EIF2AK4Q9P2K8 1649 aaKnown RBP22.78■■□□□ 1.24
ATG4B-213ENST00000460211 HSPA1LP34931 641 aa22.77■■□□□ 1.24
ATG4B-213ENST00000460211 ADGRL2O95490 1459 aa22.76■■□□□ 1.23
ATG4B-213ENST00000460211 ITGAEP38570 1179 aa22.75■■□□□ 1.23
ATG4B-213ENST00000460211 CPS1P31327 1500 aa22.75■■□□□ 1.23
ATG4B-213ENST00000460211 ANKLE2Q86XL3 938 aa22.74■■□□□ 1.23
ATG4B-213ENST00000460211 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.74■■□□□ 1.231e-13■■□□□ 12.4
ATG4B-213ENST00000460211 RNF17Q9BXT8 1623 aaKnown RBP22.73■■□□□ 1.23
ATG4B-213ENST00000460211 KANK1Q14678 1352 aa22.73■■□□□ 1.23
ATG4B-213ENST00000460211 UGGT1Q9NYU2 1555 aa22.72■■□□□ 1.23
ATG4B-213ENST00000460211 TOM1O60784 492 aa22.72■■□□□ 1.23
ATG4B-213ENST00000460211 THEMISQ8N1K5 641 aaPredicted RBP22.71■■□□□ 1.23
ATG4B-213ENST00000460211 ROCK1Q13464 1354 aa22.7■■□□□ 1.22
ATG4B-213ENST00000460211 MED1Q15648 1581 aaPredicted RBP22.7■■□□□ 1.22
ATG4B-213ENST00000460211 VWDEQ8N2E2 1590 aa22.7■■□□□ 1.22
ATG4B-213ENST00000460211 NLRP1Q9C000 1473 aa22.69■■□□□ 1.22
ATG4B-213ENST00000460211 RRBP1Q9P2E9 1410 aaKnown RBP22.69■■□□□ 1.22
ATG4B-213ENST00000460211 ANKRD50Q9ULJ7 1429 aa22.69■■□□□ 1.22
ATG4B-213ENST00000460211 NPHP4O75161 1426 aaPredicted RBP22.68■■□□□ 1.22
ATG4B-213ENST00000460211 ABCC3O15438 1527 aa22.67■■□□□ 1.22
ATG4B-213ENST00000460211 DEPDC5O75140 1603 aa22.66■■□□□ 1.22
ATG4B-213ENST00000460211 IQGAP1P46940 1657 aa22.65■■□□□ 1.22
ATG4B-213ENST00000460211 SENP3Q9H4L4 574 aaPredicted RBP22.65■■□□□ 1.22
ATG4B-213ENST00000460211 ZC3H13Q5T200 1668 aaKnown RBP22.65■■□□□ 1.22
ATG4B-213ENST00000460211 MED14O60244 1454 aa22.64■■□□□ 1.21
ATG4B-213ENST00000460211 PRDM15P57071 1507 aaPredicted RBP22.63■■□□□ 1.21
ATG4B-213ENST00000460211 MROH1Q8NDA8 1641 aa22.63■■□□□ 1.21
ATG4B-213ENST00000460211 ALKQ9UM73 1620 aa22.62■■□□□ 1.21
ATG4B-213ENST00000460211 STRCP1A6NGW2 1772 aa22.62■■□□□ 1.21
ATG4B-213ENST00000460211 CFAP65Q6ZU64 1925 aaKnown RBP22.61■■□□□ 1.21
ATG4B-213ENST00000460211 CEP152O94986 1710 aa22.6■■□□□ 1.21
ATG4B-213ENST00000460211 ARHGAP31Q2M1Z3 1444 aa22.58■■□□□ 1.21
ATG4B-213ENST00000460211 ERVK-7P63135 1459 aa22.58■■□□□ 1.2
ATG4B-213ENST00000460211 PHF23Q9BUL5 403 aaPredicted RBP22.56■■□□□ 1.2
ATG4B-213ENST00000460211 LRRC7Q96NW7 1537 aa22.56■■□□□ 1.2
ATG4B-213ENST00000460211 LMTK2Q8IWU2 1503 aa22.54■■□□□ 1.2
ATG4B-213ENST00000460211 UBR1Q8IWV7 1749 aa22.54■■□□□ 1.2
ATG4B-213ENST00000460211 SYNMO15061 1565 aa22.52■■□□□ 1.2
ATG4B-213ENST00000460211 NUP155O75694 1391 aa22.49■■□□□ 1.19
ATG4B-213ENST00000460211 SCAF11Q99590 1463 aaKnown RBP22.48■■□□□ 1.19
ATG4B-213ENST00000460211 LTKP29376 864 aa22.47■■□□□ 1.19
ATG4B-213ENST00000460211 TXNDC2Q86VQ3 553 aa22.46■■□□□ 1.19
ATG4B-213ENST00000460211 STAG3Q9UJ98 1225 aa22.46■■□□□ 1.19
ATG4B-213ENST00000460211 UNC13BO14795 1591 aa22.45■■□□□ 1.18
ATG4B-213ENST00000460211 NAIPQ13075 1403 aa22.44■■□□□ 1.18
ATG4B-213ENST00000460211 EFCAB6Q5THR3 1501 aa22.44■■□□□ 1.18
ATG4B-213ENST00000460211 RPRD2Q5VT52 1461 aaKnown RBP22.44■■□□□ 1.18
ATG4B-213ENST00000460211 SLC52A1Q9NWF4 448 aa22.43■■□□□ 1.18
ATG4B-213ENST00000460211 XIRP1Q702N8 1843 aaKnown RBP22.43■■□□□ 1.18
ATG4B-213ENST00000460211 HFM1A2PYH4 1435 aa22.42■■□□□ 1.18
ATG4B-213ENST00000460211 SLIT1O75093 1534 aa22.41■■□□□ 1.18
ATG4B-213ENST00000460211 ARHGAP23Q9P227 1491 aa22.41■■□□□ 1.18
ATG4B-213ENST00000460211 PIK3C2BO00750 1634 aa22.41■■□□□ 1.18
ATG4B-213ENST00000460211 IDI1Q13907 227 aa22.4■■□□□ 1.18
ATG4B-213ENST00000460211 EID1Q9Y6B2 187 aa22.4■■□□□ 1.18
ATG4B-213ENST00000460211 NOS1P29475 1434 aa22.4■■□□□ 1.18
ATG4B-213ENST00000460211 TET3O43151 1660 aa22.39■■□□□ 1.18
ATG4B-213ENST00000460211 TRIM52Q96A61 297 aa22.38■■□□□ 1.17
ATG4B-213ENST00000460211 IQGAP3Q86VI3 1631 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms