RNA–Protein interactions for RNA: ENST00000460211.5

ATG4B-213, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 871 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-213ENST00000460211 NISCHQ9Y2I1 1504 aa36.13■■■■□ 3.38
ATG4B-213ENST00000460211 ABCC9O60706 1549 aa32.78■■■□□ 2.84
ATG4B-213ENST00000460211 CCDC180Q9P1Z9 1646 aa32.4■■■□□ 2.78
ATG4B-213ENST00000460211 DNAJC5BQ9UF47 199 aa31■■■□□ 2.55
ATG4B-213ENST00000460211 RB1CC1Q8TDY2 1594 aa31■■■□□ 2.55
ATG4B-213ENST00000460211 NACADO15069 1562 aa30.68■■■□□ 2.5
ATG4B-213ENST00000460211 DCAF8L2P0C7V8 631 aa30.63■■■□□ 2.49
ATG4B-213ENST00000460211 PABPN1Q86U42 306 aaKnown RBP eCLIP30.49■■■□□ 2.47
ATG4B-213ENST00000460211 UNC13AQ9UPW8 1703 aa30.36■■■□□ 2.45
ATG4B-213ENST00000460211 BICRAQ9NZM4 1560 aa30.13■■■□□ 2.41
ATG4B-213ENST00000460211 MYO15BQ96JP2 1530 aa30.1■■■□□ 2.41
ATG4B-213ENST00000460211 ZCCHC6Q5VYS8 1495 aaKnown RBP30.06■■■□□ 2.4
ATG4B-213ENST00000460211 DCAF1Q9Y4B6 1507 aa29.9■■■□□ 2.38
ATG4B-213ENST00000460211 SCRIBQ14160 1630 aa29.6■■■□□ 2.33
ATG4B-213ENST00000460211 CC2D2AQ9P2K1 1620 aa29.57■■■□□ 2.32
ATG4B-213ENST00000460211 SHROOM4Q9ULL8 1493 aa29.57■■■□□ 2.32
ATG4B-213ENST00000460211 CECR2Q9BXF3 1484 aa29.52■■■□□ 2.32
ATG4B-213ENST00000460211 EIF4G1Q04637 1599 aaKnown RBP29.41■■■□□ 2.3
ATG4B-213ENST00000460211 DNAJC5Q9H3Z4 198 aa28.62■■■□□ 2.17
ATG4B-213ENST00000460211 NCAPD3P42695 1498 aa28.33■■■□□ 2.13
ATG4B-213ENST00000460211 ERCC6Q03468 1493 aa28.31■■■□□ 2.12
ATG4B-213ENST00000460211 CUX2O14529 1486 aa28.28■■■□□ 2.12
ATG4B-213ENST00000460211 ATAD2BQ9ULI0 1458 aa28.23■■■□□ 2.11
ATG4B-213ENST00000460211 SMARCA4P51532 1647 aa28.16■■■□□ 2.1
ATG4B-213ENST00000460211 SMARCA2P51531 1590 aa28.13■■■□□ 2.09
ATG4B-213ENST00000460211 HMGXB3Q12766 1538 aa28.1■■■□□ 2.09
ATG4B-213ENST00000460211 NESP48681 1621 aa28.08■■■□□ 2.09
ATG4B-213ENST00000460211 BAZ1AQ9NRL2 1556 aaPredicted RBP28.03■■■□□ 2.08
ATG4B-213ENST00000460211 BAZ1BQ9UIG0 1483 aaKnown RBP27.97■■■□□ 2.07
ATG4B-213ENST00000460211 MROH2BQ7Z745 1585 aa27.82■■■□□ 2.04
ATG4B-213ENST00000460211 THOC2Q8NI27 1593 aaKnown RBP27.82■■■□□ 2.04
ATG4B-213ENST00000460211 PEG3Q9GZU2 1588 aa27.82■■■□□ 2.04
ATG4B-213ENST00000460211 LAMC3Q9Y6N6 1575 aa27.76■■■□□ 2.03
ATG4B-213ENST00000460211 KIF21AQ7Z4S6 1674 aa27.72■■■□□ 2.03
ATG4B-213ENST00000460211 PDS5BQ9NTI5 1447 aa27.61■■■□□ 2.01
ATG4B-213ENST00000460211 RSF1Q96T23 1441 aaPredicted RBP27.52■■■□□ 2
ATG4B-213ENST00000460211 WIZO95785 1651 aa27.49■■□□□ 1.99
ATG4B-213ENST00000460211 CADPSQ9ULU8 1353 aa27.48■■□□□ 1.99
ATG4B-213ENST00000460211 MRC2Q9UBG0 1479 aa27.41■■□□□ 1.98
ATG4B-213ENST00000460211 TRIM41Q8WV44 630 aa27.36■■□□□ 1.97
ATG4B-213ENST00000460211 WDR62O43379 1518 aa27.34■■□□□ 1.97
ATG4B-213ENST00000460211 CEP164Q9UPV0 1460 aa27.25■■□□□ 1.95
ATG4B-213ENST00000460211 TOP2AP11388 1531 aaKnown RBP27.23■■□□□ 1.95
ATG4B-213ENST00000460211 FANCD2Q9BXW9 1451 aa27.19■■□□□ 1.94
ATG4B-213ENST00000460211 CFTRP13569 1480 aa27.09■■□□□ 1.93
ATG4B-213ENST00000460211 URB2Q14146 1524 aaKnown RBP27■■□□□ 1.91
ATG4B-213ENST00000460211 OSCARQ8IYS5 282 aa26.97■■□□□ 1.91
ATG4B-213ENST00000460211 CCDC88BA6NC98 1476 aa26.94■■□□□ 1.9
ATG4B-213ENST00000460211 SUPT5HO00267 1087 aaKnown RBP26.86■■□□□ 1.89
ATG4B-213ENST00000460211 PRDM2Q13029 1718 aa26.85■■□□□ 1.89
ATG4B-213ENST00000460211 ZNF608Q9ULD9 1512 aaPredicted RBP26.74■■□□□ 1.87
ATG4B-213ENST00000460211 RIMBP3CA6NJZ7 1639 aa26.7■■□□□ 1.86
ATG4B-213ENST00000460211 RIMBP3BA6NNM3 1639 aa26.7■■□□□ 1.86
ATG4B-213ENST00000460211 RIMBP3Q9UFD9 1639 aa26.7■■□□□ 1.86
ATG4B-213ENST00000460211 IFT140Q96RY7 1462 aa26.69■■□□□ 1.86
ATG4B-213ENST00000460211 TOPBP1Q92547 1522 aa26.65■■□□□ 1.86
ATG4B-213ENST00000460211 EIF4G3O43432 1585 aaKnown RBP26.57■■□□□ 1.84
ATG4B-213ENST00000460211 ARHGEF11O15085 1522 aa26.56■■□□□ 1.84
ATG4B-213ENST00000460211 DNMBPQ6XZF7 1577 aa26.52■■□□□ 1.84
ATG4B-213ENST00000460211 ABCC8Q09428 1581 aa26.5■■□□□ 1.83
ATG4B-213ENST00000460211 CHD1O14646 1710 aa26.46■■□□□ 1.83
ATG4B-213ENST00000460211 AQRO60306 1485 aaKnown RBP eCLIP26.46■■□□□ 1.832e-11■■■■□ 19.6
ATG4B-213ENST00000460211 TARBP1Q13395 1621 aaKnown RBP26.43■■□□□ 1.82
ATG4B-213ENST00000460211 CYB5RLQ6IPT4 315 aa26.42■■□□□ 1.82
ATG4B-213ENST00000460211 FBLN2P98095 1184 aa26.39■■□□□ 1.82
ATG4B-213ENST00000460211 POLA1P09884 1462 aaPredicted RBP26.36■■□□□ 1.81
ATG4B-213ENST00000460211 RAD54L2Q9Y4B4 1467 aa26.3■■□□□ 1.8
ATG4B-213ENST00000460211 ARAP1Q96P48 1450 aa26.29■■□□□ 1.8
ATG4B-213ENST00000460211 TDRD9Q8NDG6 1382 aaKnown RBP26.25■■□□□ 1.79
ATG4B-213ENST00000460211 TRHP20396 242 aaPredicted RBP26.25■■□□□ 1.79
ATG4B-213ENST00000460211 SOGA1O94964 1423 aa26.23■■□□□ 1.79
ATG4B-213ENST00000460211 SNAPC4Q5SXM2 1469 aa26.17■■□□□ 1.78
ATG4B-213ENST00000460211 FGD5Q6ZNL6 1462 aa26.17■■□□□ 1.78
ATG4B-213ENST00000460211 CUX1P39880 1505 aa26.1■■□□□ 1.77
ATG4B-213ENST00000460211 CHMP7Q8WUX9 453 aaPredicted RBP26.09■■□□□ 1.77
ATG4B-213ENST00000460211 CLASP1Q7Z460 1538 aa26.09■■□□□ 1.77
ATG4B-213ENST00000460211 WDR97A6NE52 1622 aa26.06■■□□□ 1.76
ATG4B-213ENST00000460211 SYNJ1O43426 1573 aa26.05■■□□□ 1.76
ATG4B-213ENST00000460211 MAGI1Q96QZ7 1491 aaPredicted RBP26.04■■□□□ 1.76
ATG4B-213ENST00000460211 GRIN2BQ13224 1484 aa26.02■■□□□ 1.76
ATG4B-213ENST00000460211 WRNQ14191 1432 aaPredicted RBP eCLIP25.98■■□□□ 1.75
ATG4B-213ENST00000460211 SYNJ2O15056 1496 aa25.97■■□□□ 1.75
ATG4B-213ENST00000460211 PBRM1Q86U86 1689 aa25.96■■□□□ 1.75
ATG4B-213ENST00000460211 GAPVD1Q14C86 1478 aa25.91■■□□□ 1.74
ATG4B-213ENST00000460211 TOP2BQ02880 1626 aa25.86■■□□□ 1.73
ATG4B-213ENST00000460211 ABCA5Q8WWZ7 1642 aa25.82■■□□□ 1.72
ATG4B-213ENST00000460211 BIVM-ERCC5R4GMW8 1640 aa25.82■■□□□ 1.72
ATG4B-213ENST00000460211 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
ATG4B-213ENST00000460211 ERCC6L2Q5T890 1561 aa25.72■■□□□ 1.71
ATG4B-213ENST00000460211 GRIN2AQ12879 1464 aa25.7■■□□□ 1.7
ATG4B-213ENST00000460211 AEBP2Q6ZN18 517 aaPredicted RBP25.69■■□□□ 1.7
ATG4B-213ENST00000460211 ADAMTS12P58397 1594 aa25.66■■□□□ 1.7
ATG4B-213ENST00000460211 CEP170Q5SW79 1584 aa25.65■■□□□ 1.7
ATG4B-213ENST00000460211 NUP160Q12769 1436 aa25.59■■□□□ 1.69
ATG4B-213ENST00000460211 FHAD1B1AJZ9 1412 aa25.54■■□□□ 1.68
ATG4B-213ENST00000460211 SHROOM2Q13796 1616 aa25.53■■□□□ 1.68
ATG4B-213ENST00000460211 ERICH3Q5RHP9 1530 aa25.51■■□□□ 1.67
ATG4B-213ENST00000460211 KIF27Q86VH2 1401 aa25.48■■□□□ 1.67
ATG4B-213ENST00000460211 PRG4Q92954 1404 aaPredicted RBP25.42■■□□□ 1.66
ATG4B-213ENST00000460211 KIF13AQ9H1H9 1805 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 136.8 ms